M. E. Arroyo-de Dompablo*a,
M. A. Fernández-Gonzálezb and
L. Fernández-Díazcd
aDpto. de Química Inorgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040-Madrid, Spain. E-mail: e.arroyo@quim.ucm.es
bDepartamento de Geología, Universidad de Oviedo, 33005 Oviedo, Spain
cDepartamento de Cristalografía y Mineralogía, Universidad Complutense de Madrid, 28040 Madrid, Spain
dInstituto de Geociencias (IGEO), (CSIC, UCM), 28040 Madrid, Spain
First published on 2nd July 2015
The incorporation of tetrahedral AO42− groups (A = S, Cr, Se) in CaCO3 polymorphs (calcite, aragonite and vaterite) is investigated from first principles calculations at the Density Functional Theory (DFT) level. We found that the less dense and softer vaterite crystal structure has greater capability to distort accommodating tetrahedral ions. The calculated mixing enthalpies at 0 K of the Ca(CO3)1−x(AO4)x (A = S, Se, Cr) vaterite and calcite polymorphs are below 3 kJ mol−1 when x < 0.05, confirming that the incorporation of small concentrations of tetrahedral groups is thermodynamically feasible in these polymorphs at moderate temperatures. Calcite is identified as the most stable polymorph at any investigated dopant concentration (0 < x < 0.25). Although our results do not predict stability crossovers resulting from AO42− group incorporation into CaCO3 polymorphs, they strongly support a reduction of the driving force for the transformation of AO4-bearing vaterite into the thermodynamically stable calcite.
Sulfate (SO42−), chromate (CrO42−) and selenate (SeO42−) are tetrahedral oxoanions of similar size. Sulfate is an abundant ion in both ground waters and seawater and a main component of sedimentary rocks.6 Although chromate and selenate are far less abundant than sulfate, the concentration of both oxoanions in natural environments has been growing during the last century due to mining activities and the extended use of Cr and Se compounds in a variety of industries.7,8 Chromate is a powerful mutagen and carcinogen.9 Contrarily, selenate is considered not to be toxic for organisms. However, the high radiotoxicity of the long-lived isotope 79Se has raised general concern on the spread of selenium compounds in natural waters and soils.10–12 The incorporation of inorganic pollutants into the structure of stable sparingly soluble mineral phases, like e.g. calcite, is considered an effective means to long-term reduce the mobility and bioavailability of contaminants.13–15
Reeder and coworkers studied the incorporation of SO42−, SeO42− and CrO42− into synthetic calcite using synchrotron radiation based techniques and concluded that all three tetrahedral oxoanions substitute in the position occupied by CO32− groups with significant disruption of the local structure.16–18 It is well known that sulfate incorporates into natural calcite and aragonite of inorganic origin in concentrations that in calcite are 1.8 to 4.2 times those found in aragonite.19 Biogenic calcium carbonates also contain significant sulfur concentrations (from several hundred to several thousand ppm20). Although this sulphur is commonly related to occluded organic matter,21 a recent micro X-ray fluorescence (μ-XRF) and X-ray absorption near-edge structure (XANES) study of the local environment of sulfur in bivalve shells has demonstrated the presence of inorganic sulfate in both calcitic and aragonitic shells.22
Recent studies have shown that the crystallization of CaCO3 is strongly influenced by the presence of tetrahedral oxoanions in the growth medium. This influence translates into the stabilization of metastable phases in all the cases. Thus, different authors have reported that in the presence of chromate and selenate the formation of vaterite is promoted and the transformation of this phase into the stable calcite becomes progressively delayed as the concentration of these oxyanions in the growth medium is higher.23–25 The influence of sulfate on CaCO3 crystallization seems to be far more complex: whereas different authors have concluded that the presence of sulfate induces a switch from calcite to aragonite,26–29 other authors point to vaterite30–33 becoming the predominant polymorph in sulfate-rich environments.
The possibility that the incorporation of certain ions induces changes in the relative stability of polymorphs is most relevant in the context of biomineralization studies, where understanding the factors that control CaCO3 polymorph selection has become a major issue.34 Stability crossovers also need to be considered when designing strategies for the storage of contaminant elements in the structure of sparingly soluble minerals since the development of transformations between polymorphs could lead to the release of those pollutants to the environment. The growing concern over climate change is also promoting the exploration of methods for the long-term carbon dioxide sequestration. Some of these methods involve the introduction of supercritical carbon dioxide into deep aquifers.35 The interaction between CO2, the aqueous phase and the rock-stock will lead to the precipitation of CaCO3 through both, the reaction with dissolved calcium and the carbonation of rock-forming minerals.33,36 Since dissolved sulfate is ubiquitous in ground waters and calcium sulfate minerals like gypsum (CaSO4·2H2O) and anhydrite (CaSO4) are major constituents of evaporitic rocks, it is important in this context to understand the influence of sulfate oxoanions in the energetics of the CaCO3 system.
In this work we attempt to rationalize the factors that account for the observed CaCO3 polymorph selection in the presence of sulfate, chromate and seleniate oxoanions. With this aim we have used computational methods to investigate the thermodynamic feasibility of incorporating the above mentioned tetrahedral groups in the CaCO3 polymorphs. In a previous work32 we studied the incorporation of sulfate groups in CaCO3 polymorphs by atomistic model simulations. This computational technique requires empirical or semiempirical interatomic potentials, which are implemented in force fields. Good quality and transferable force fields are known for sulfates,37 chromates38 and carbonates.39 However, to the best of our knowledge, reliable force fields have not been developed for seleniates. Quantum-chemical calculations do not require any experimental input beyond the crystal structure and the nature of the constituent elements. This makes Density Functional Theory (DFT) a powerful tool to investigate the energetics of different compositions of the anionic solid solutions Ca(CO3)1−x(AO4)x (A = S, Se, Cr) considering different structural types (calcite, aragonite and vaterite).
c) is the most stable form of CaCO3 at ambient P and T conditions. Its crystal structure consists on carbonate groups perpendicular to the c axis with Ca atoms in octahedral coordination (Fig. 1a). Calcite transforms to the denser aragonite (S.G. Pmcn, Fig. 1b) at the upper mantle conditions. In such transformation the coordination of Ca ion increases to ninefold while the carbonate groups remain perpendicular to the c axis. Vaterite is a metastable CaCO3 polymorph at any P–T. The crystal structure of vaterite is still under debate. It is accepted that Ca ions are in eightfold coordination and carbonate groups lie parallel to the c axis. At room temperature vaterite is a dynamic structure; the rotation of the carbonate groups in the three possible orientations parallel to the c axis results in a disordered structure. Layer stacking and chirality introduce additional structural complexity.40,41 Along the years several crystal models has been postulated with tetragonal (Pbnm,42 Ama2 (ref. 43)), hexagonal (P63/mmc,44 P6522,45 P3221,46 P6322 (ref. 47)) and monoclinic (C2/c,41 C
(ref. 48)) symmetries. Recent computational40,46 and experimental48 investigations point to the coexistence in vaterite of various crystal structures exhibiting minor structural and energetic differences. Fig. 1c shows the crystal structures of the Ama2 and P63/mmc models, which together with the P6522 were computed in this work. The P6522 is an ordered superstructure of the P63/mmm disordered pseudo-cell.
The initial cell parameters and atomic positions of calcite and aragonite were taken from Graf55 and de Villiers,56 respectively. For the structure of vaterite three different models were investigated; P6522 from Wang,45 Ama2 from Le Bail43 and P63/mmc from Kamhi.44 From the original unit cells of calcite, aragonite and vaterite by Le Bail and by Kamhi, the supercells were built by adding complete cells in different directions a, b or/and c. In each supercell one of the CO32− groups was substituted by one AO42− group. The A atom of the AO42− tetrahedron was set to the position of the C atom of the CO3 triangle in the original supercell. In the built supercells all the CO32− groups are symmetrically equivalent and therefore, any of them could have been substituted by AO42− with identical results. Moreover, for each explored substitution, at least 10 initial random orientations of the AO42− tetrahedron were tested, but they all converged to the same final orientation at the first stages of relaxation. More details about the supercells construction can be found in our previous work.32 The number of CaCO3 formula ranged from 4 to 48. Since in each supercell one of the CO32− groups was substituted by an AO42− group (A = S, Cr, Se), the doped structures can be formulated as Ca(CO3)1−x(AO4)x with 0.021 < x < 0.25. Fig. 1 shows selected examples of the computed structures. Estimation of mixing enthalpies i.e., the enthalpy difference between the doped Ca(CO3)1−x(AO4)x and the pure compounds CaCO3 and CaAO4 with A = S, Cr, Se, required calculating the total energy of anhydrite-CaSO4,57 chromatite-CaCrO4
58 and CaSeO4. For the latter, since no known mineral has the composition CaSeO4, the crystal structure of chromatite was also adopted.
Relaxed structure calculations were performed at various constant volumes and the energy-volume data was fitted to the Murnaghan equation of state59
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| CaCO3 polymorph | Calculated a, b, c (Å), V (Å3) | Exp. a, b, c (Å), V (Å3) | Cal. B (GPa) | Exp. B (GPa) |
|---|---|---|---|---|
| Calcite | 5.048, 5.048, 17.249, 380.69 | 4.9900, 4.9900, 17.0615, 367.916 (ref. 55) | 71.4 | 73 61 |
| Aragonite | 5.009, 8.030, 5.796, 233.16 | 4.9614, 7.9671, 5.7404, 226.85 (ref. 56) | 67.0 | 67.1 62 |
| Vaterite P6522 | 7.280, 7.280, 25.538, 1172.29 | — | 60.4 | — |
| Pseudocell | 4.203, 4.203, 8.513, 130.23 | 4.13, 4.13, 8.49,44 125.41 |
We have also calculated the total energy of other vaterite models, Ama2
43 and P63/mmc.44 Fig. 2 confronts our results with others reported in the literature,41,45,46,63–65 taking that of vaterite-P6522 as the zero of energy. Our calculated energy differences among vaterite-P6522, calcite and aragonite agree with those reported by other authors using a similar set for the calculations. Regarding the vaterite structures, the most stable models are the hexagonal P6522 and P3211, whose calculated total energies differ by less than 1.5 kJ mol−1. The second hexagonal model that we tested, the disordered pseudo-cell of S.G. P63/mmc, is 5.9 kJ mol−1 less stable than its ordered superstructure P6522. In good agreement with other authors, we found the orthorhombic Ama2 model quite unstable, with a calculated total energy of 16.5 kJ mol−1 higher than that of the P6522 model.
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| Fig. 2 Summary of calculated relative energetic stability of CaCO3 polymorphs utilizing DFT methods (in kJ mol−1). Models considered for the vaterite polymorphs are split in two groups: hexagonal models (P6522, P3221, P63/mmc) and orthorhombic (Ama2 and Pbnm). The zero of energy is set at the calculated energy for the vaterite-P6522. Reported data are taken from63 (MP),46 (PBE and PBE-sol),64 (PBE*),41 (PBE#) and45 (PW91). Energies calculated in this work are given in bold blue numbers. | ||
From Fig. 2 it is evident that important energy differences exit among the distinct vaterite models. Given the complexity of describing the vaterite with an unique crystallographic model it seems important to evaluate the effect of the crystal structure on the energetics of the incorporation of tetrahedral groups. In order to establish a comparison with our previous atomistic simulation investigation,32 we have chosen the hexagonal P63/mmc model (10 atoms), which is a pseudo cell of the P6522 vaterite structure.41 Supercell calculations for the most stable ordered models would be computationally very demanding (the unit cell of P6522 has 90 atoms). Hence we have also considered the orthorhombic vaterite Ama2 (20 atoms) which, in spite of being one of the less stable models (see Fig. 3), is computationally affordable.
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| Fig. 3 Calculated mixing energies of Ca(CO3)1−x(AO4)x in the crystal structures of calcite (red circles) aragonite (grey squares) and vaterite-P63/cmm (green triangles) and vaterite-Ama2 (blue diamonds). A magnification of the figure for x < 0.1 is given in ESI.† | ||
| (1 − x)Pol-CaCO3 + xCaAO4 → Pol-Ca(CO3)1−x(AO4)x | (2) |
Positive enthalpies of mixing represent a tendency for phase separation into the respective CaCO3 polymorph (calcite, aragonite and vaterite) and CaAO4 (anhydrite structure for A = S, and chromatite structure for A = Se or Cr). Negative values indicate the thermodynamic feasibility of the formation of mixed (ordered or disordered) Ca(CO3)1−x(AO4)x compounds. Fig. 3 shows the calculated mixing enthalpies for 0 < x < 0.25 with A being sulfur (left panel), selenium (medium panel) and chromium (right panel). In all cases positive mixing enthalpies are obtained, regardless of the concentration (x value), nature of the tetrahedral AO4 group (S, Cr or Se) and structure of the CaCO3 polymorph (calcite, aragonite or vaterite). This indicates that thermodynamically a mixture of the corresponding CaCO3 and CaAO4 minerals is favoured over the formation of Ca(CO3)1−x(AO4)x at low temperature. A trend of increasing enthalpy values with the concentration of AO4 groups (x) is observed for the three polymorphs (Fig. 3).
For any given AO4 concentration the enthalpy of mixing is lower for the vaterite polymorph than for either calcite or aragonite, independently of the crystallographic model utilized in the calculation (vaterite P63/cmm or Ama2). Enthalpies of mixing in the calcite structure are only about 1 kJ mol−1 higher than those of the most stable vaterite polymorph (for a more detailed scale see ESI †2†). Incorporation of tetrahedral groups is by far less favourable in the aragonite polymorph, with mixing enthalpy differences respective to vaterite more than 4 kJ mol−1. Although not shown in Fig. 3, the calculated mixing enthalpy in the aragonite phase raises to about 45 kJ mol−1 at x = 0.25. These results agree well with a recent DFT investigation,64 where the energetic feasibility of incorporating SO4 groups in CaCO3 polymorphs follows the sequence vaterite > calcite
aragonite. It should be noticed that such investigation is constricted to SO=4/CO=3 ratios of 0.066 (calcite) 0.032 (aragonite) and 0.058 (vaterite).64 In contrast with the results of this work, our previous atomistic modeling study32 found negative energies for the incorporation of sulfate groups in vaterite-P63/mmc. However, in such investigation the mixing energies refer to the averaged P63/mmc structure for the three possible orientations of the carbonate groups. The present work is constricted to the most favourable orientation, which could penalize the formation of mixed Ca(CO3)1−x(SO4)x.
Regarding the nature of the AO4 group incorporated (A = S, Se or Cr), at a given concentration the mixing enthalpy raises from sulfate to seleniate or chromate groups, making less thermodynamically feasible the formation of the doped Ca(CO3)1−x(AO4)x vaterites for A = Se, Cr. A strict chemical comparison of the investigated AO4 groups is difficult due to the distinct A electronic configurations (np4 for chalcogenides S and Se and d4 for transition metal Cr). However, one can expect the volume of the tetrahedral group to be the main factor in determining the mixing enthalpies. As a first indicative of the tetrahedral group volume, the ionic radii of A in coordination number four can be considered, being 0.12 Å for S6+, 0.26 Å for Se6+ and 0.30 Å for Cr+6.66 Secondly, the tetrahedral group volume can be estimated from the calculated A–O distances in the Ca(CO3)1−x(AO4)xO3 structures. The calculated bond lengths fall in the ranges 1.45–1.50 Å (S–O), 1.63–1.69 Å (Se–O) and 1.62–1.69 Å (Cr–O). As seen in Fig. 3 the nature of the AO4 group have a quantitative effect on the mixing enthalpies. The greater AO4 groups raise the mixing enthalpy values for all the polymorphs, being this trend more notorious at larger x values. For instance, considering incorporation of AO42− in the calcite structure, for x = 0.021 the energy mixing values are 2.4 (S), 2.7 (Se) and 2.6 (Cr) kJ mol−1; this is, the larger sizes of Se and Cr penalize the incorporation of the respective AO42− groups in about 0.3 kJ mol−1. Though this small difference cannot be considered significant enough to derive conclusions on the size-related effect of the incorporation of tetrahedral oxoanions on the energetics of CaCO3 polymorphs, this particular trend becomes more evident when higher substituting levels are considered. Thus, for x = 0.167 the values are 12.5 (S), 14.9 (Se) and 16.0 (Cr) kJ mol−1, with a penalty of around 3 kJ mol−1 for the incorporation of the larger SeO42− and CrO42− groups.
Even if the reaction (2) has a positive reaction enthalpy, this reaction might still be thermodynamically feasible if it were accompanied by a large enough positive entropy of mixing. In this case, the transformation could become favourable at temperatures above 0 K (ΔGr = ΔHr − TΔSr). At low AO42− concentrations (x < 0.03), the mixing enthalpy for sulfate groups is much smaller than the thermal energy at room temperature (KBT = 2.5 kJ mol−1), with a minimum value of 0.7 kJ mol−1 for vaterite-P63/mmc making the incorporation of tetrahedral groups in vaterite quite likely. On the contrary, the larger enthalpies of mixing for the aragonite polymorph (minimum values of 5 kJ mol−1) suggest that even considering entropic factors the incorporation of tetrahedral groups in this polymorph would still be precluded.
| Pol.I-Ca(CO3)1−x(AO4)x → Pol.II-Ca(CO3)1−x(AO4)x | (3) |
Fig. 4 shows the difference in calculated total energy of aragonite and vaterite Ca(CO3)1−x(AO4)x relative to the calcite polymorph for A being sulfur (left panel), selenium (medium panel) and chromium (right panel). This figure has been constructed from the data collected in Fig. 2 of ESI.† Positive energy difference means an energetically less stable state. As seen in Fig. 4, the relative energetic stability is almost independent of the nature of the tetrahedral group. Calcite remains as the most stable polymorph, while the presence of tetrahedral groups greatly destabilizes the densest aragonite structure. At the reasonable doping concentrations (x < 0.1), the relative energy of any of the two vaterite models respective to calcite is slightly decreasing. Generally speaking, for higher concentrations (not reachable in practise), the trend is that vaterite lowers its energy respective to the calcite phase.
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| Fig. 4 Relative energetic stability of Ca(CO3)1−x(AO4)x in the crystal structures of calcite (red circles) aragonite (grey squares), vaterite-P63/cmm (green triangles) and vaterite-Ama2 (blue diamonds). The zero of energy is taken from the linear fit of the calculated calcite total energy vs. composition (see ESI 2†). | ||
These results indicate that, even though incorporation of tetrahedral groups is more favoured in vaterite structure, the resulting vaterite-Ca(CO3)1−x(AO4)x would transform to the thermodynamically stable phase calcite–Ca(CO3)1−x(AO4)x. It should be noted that at room temperature one must account for the entropy. The softer vaterite phase has a larger entropy than the calcite phase (So298 vaterite = 93.01 J kmol−1, So298 calcite = 91.71 J kmol−1
67). Similar differences can be expected between doped vaterite and calcite. This is to say, at room temperature, the entropy contribution might lower the free energy of AO4–vaterite respective to AO4–calcite. In the end, the effect of the incorporation of tetrahedral groups is to diminish the driving force for the vaterite to calcite transformation.
Beyond the thermodynamics of CaCO3 polymorphs, kinetics issues must be discussed. The activation energy for the vaterite to calcite phase transition in the solid state is of 250 kJ mol−1.41 In the presence of an aqueous phase this phase transition would occur through a mechanism which involves a dissolution–crystallization process, for which the activation energy is 55 kJ mol−1.68 This much smaller activation energy makes the dissolution–crystallization mechanism a more likely one under earth surface conditions than the solid state transformation. The driving force for solvent mediated polymorphic transformations is the difference in solubility between the two polymorphs involved in the process.69 It is well known that the solubility of solid solutions is composition dependent and relates to the solubilities of the end-members in a way that depends on the degree of ideality/non-ideality of this solid solution.70–73 Consequently, the solubilities of AO4–vaterite and AO4–calcite will differ from those of pure vaterite and pure calcite. The change in solubility of each polymorph as a function of their AO42− content will relate to the enthalpy change resulting from AO42− incorporation. Since the enthalpy difference between doped-vaterite and doped-calcite decrease as their AO42− content increases, the difference in solubility between these polymorphs will also decrease as they incorporate higher amounts of AO42− substituting CO32−. The direct consequence of these changes in solubility will be a reduction of the driving force for the solvent mediated transformation of doped-vaterite into doped calcite.
The above solubility considerations play a key role in ageing experiments of CaCO3 precipitated from chromate-bearing aqueous solutions.23–25 These experiments rendered a progressively more sluggish kinetic for the coupled dissolution–crystallization transformation of vaterite into calcite as the initial concentration of CrO4 in the growth medium was higher.24,74 This change in the kinetics of the transformation can be interpreted as the result of a progressive reduction of the difference in solubility between vaterite-type and calcite-type Ca(CO3)1−x(CrO4)x solid solution as the amount of CrO42− is higher. The direct consequence of this reduction of the difference in solubility is the decrease of the driving force for the solvent mediated polymorphic transformation between the vaterite-type and the calcite-type phases.
The influence of sulfate in the crystallization of CaCO3 has been far more studied than that of chromate and selenate. Paradoxically, rather than bringing up a clearer picture, the results of different studies seem to be contradictory. All experimental studies point to the sulfate presence in the growth medium strongly affecting CaCO3 polymorph selection. However, while according to a number of those studies sulfate favors the formation of vaterite32,33 and inhibits its transformation into calcite, there is also significant experimental evidence that sulfate stabilizes aragonite.26,28,29 According to the results of the present work, even if vaterite does not effectively become the most stable CaCO3 polymorph at 0 K conditions, the energies of vaterite and calcite containing equal amounts of sulfate are progressively closer as the concentration of sulfate increases. Since similar conclusions were previously obtained in other modeling studies,32,64 it must be concluded that, even if the formation of vaterite in the first place results from the predominance of kinetics over thermodynamics, thermodynamic factors control the stabilization of sulfate-bearing vaterite with respect to calcite in a similar way as described for chromate-bearing vaterite. Contrarily to the behavior of vaterite, the energy of aragonite rapidly increases with sulfate incorporation. Therefore, the reasons underlying the stabilization of this polymorph in the presence of sulfate cannot be thermodynamic but kinetic. In addition to the solubilities of the polymorphs a plethora of other physicochemical parameters of the solution (pH, CO32−/AO42− ratio, temperature, presence of other foreign ions…) can play a role promoting or hindering the development of solvent mediated transformations between CaCO3 polymorphs. A good example is provided by the nucleation of metastable aragonite in solutions with Mg
:
Ca ratios consistent with modern see water.65 Unravelling this role in each particular system will require to conduct specifically design experiments.
Computational results contribute to draw a clearer picture of the thermodynamics of Ca(CO3)1−x(AO4)x polymorphs. However, in order to interpret observations in both experimental systems and natural media, kinetic effects need also be considered. Indeed, under earth surface and subsurface temperatures, most solid state transformations between polymorphs are kinetically hindered and routes involving dissolution–recrystallization processes dominate mineral reactions. The progress of these processes is unavoidably affected by the nature and concentration of ions present in the media (Ca2+, Mg2+, CO32−, HCO3−, AO42−…). Taking into consideration all physicochemical factors that can play a role in the stabilization/transformation of CaCO3 polymorphs should help to conciliate the results of computational approaches and the diversity of experimental observations made to the date.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: 10.1039/c5ra08574h |
| This journal is © The Royal Society of Chemistry 2015 |