Guozhong Zhaoa,
Yunping Yaoa,
Guangfei Haoa,
Dongsheng Fangc,
Boxing Yinc,
Xiaohong Cao*b and
Wei Chen*a
aState Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi 214122, Jiangsu, China. E-mail: chenwei66@jiangnan.edu.cn; Fax: +86-510-85912155; Tel: +86-510-85912155
bKey Laboratory of Food Nutrition and Safety (Tianjin University of Science & Technology), Ministry of Education, Tianjin 300457, China. E-mail: zhaoguozhongsun@gmail.com
cYangzhou University Healthy Source Dairy Co. Ltd., Yangzhou 225004, Jiangsu Province, P. R. China
First published on 26th February 2015
Aspergillus oryzae 100-8 and the parental strain A. oryzae 3.042 are used in soy sauce fermentation in China. The growth rate of A. oryzae 100-8 is faster than A. oryzae 3.042, and the soy sauce flavors obtained with A. oryzae 100-8 fermentation are better than those obtained with A. oryzae 3.042. In this study, comparisons were made through biomass, reactive oxygen species (ROS) and gas chromatography-mass spectrometry (GC-MS) measurements, and the reasons for these differences were investigated through transcriptome and qRT-PCR analysis. The analysis indicated that several unique genes are closely associated with hyphal growth and flavor formation, as demonstrated by changes in the expression levels of these genes. These unique genes regulate hyphal growth and flavor formation in soy sauce koji fermentation.
Various studies of the flavors in traditional soy sauce had been reported;5,6 however, research on the volatile flavors in soy sauce koji had not been systematically conducted. A. oryzae has the inherent ability to secrete degrading enzymes, such as protease, cellulase and amylase. Raw materials are decomposed to sugars and peptides, and other flavor compounds are synthesized within A. oryzae and then transferred to the extracellular environment during koji fermentation. Koji flavors, as soy sauce flavor precursors, play a decisive role in forming the desired flavor compounds in soy sauce.
The lack of knowledge regarding gene regulation in A. oryzae strains induced us to further elucidate the differences between A. oryzae 100-8 and A. oryzae 3.042. The transcriptome sequencing approach had provided insights into the biology of several species, leading to the development of functional transcriptome analysis and to high-throughput approaches for determining phenotypes.7 We analyzed the transcriptomes of A. oryzae 100-8 and A. oryzae 3.042 at different stages of fermentation, and demonstrated the potential of such analysis to elucidate variability in the genes associated with growth and flavor to provide further understanding of the general biology of this filamentous organism. The analysis revealed several genes that are important in mycelial growth and flavor formation.
ROS production was also estimated in this study.9 Strains grown at 28 °C for 30 h were incubated with the ROS indicator H2DCFDA (dichlorodihydrofluorescein diacetate; Invitrogen, OR, USA) (20 μM in phosphate-buffered saline). The dichlorofluorescin (DCF) produced by the two strains was assessed using a Nikon 90i fluorescence microscope (Nikon Corp, Tokyo Japan).10
Fig. 2 Comparison of the biomass yield (dry weight) of A. oryzae 3.042 and A. oryzae 100-8 strains under identical conditions grown for 30 h, 36 h and 42 h. |
The expression levels of some genes associated with Ca2+ in hyphal growth were clearly lower in A. oryzae 100-8 than in A. oryzae 3.042 (Fig. 3, Table S2†). It had been proposed that Ca2+ ions regulate and coordinate the process of hyphal growth.16 Ca2+ ions may cross-link with the carbohydrates and macromolecules of the cell wall and make the cell wall more rigid. H+ ions may promote Ca2+ dissociation to give cell wall plasticity. Ca2+ and H+ ions thus regulate the balance between rigidity and plasticity. A relatively low concentration of cytoplasmic Ca2+ may play a role in increasing plasticity and thus promoting hyphal growth, with the fungi responding to the balance between Ca2+ and H+ (Fig. S2†).
During the dynamic phase of protein secretion and hyphal growth, the energetic requirements of A. oryzae were increased; A. oryzae 100-8 required more energy to balance these processes than A. oryzae 3.042. The mechanism for regulating cellular energy metabolism had been postulated on the basis of the reversible control of respiration, closely related to oxidative phosphorylation. Genes which were up-regulated in A. oryzae 100-8 than 3.042 were listed in Table S2.† The NADH:ubiquinone oxidoreductase (complex I) (AO1008_01771, AO1008_10474, AO1008_06499, AO1008_08911, AO1008_03516) catalyzes the first step in the mitochondrial respiratory chain,17 involving the entry of electrons from NADH. Complex II participates in the electron transport chain; electrons are delivered from ubiquinol to cytochrome c by cytochrome bc1 (complex III) (AO1008_08130). Cytochrome oxidase (complex IV) (AO1008_05880) generates a transmembrane proton gradient, and electrons are transferred to the active site. Complexes I, II, III and IV are the electron transfer complexes, while complex V (AO1008_05587, AO1008_01244, AO1008_02044) is an energy-conserving complex that catalyzes ATP-Pi exchange and ATP hydrolysis (Fig. S3†).
The comparative analysis of the transcriptomes of A. oryzae 3.042 and A. oryzae 100-8 conducted in this study suggests that some genes are involved in hyphal growth (Table S2†). The Ras-like GTPase is involved in the apical polarization of the actin cytoskeleton, a determinant of growth direction.18 RNA helicase is required for cell growth and proliferation.19 Dual-specificity phosphatase (DSP) appears to be selective for dephosphorylating the critical phosphothreonine and phosphotyrosine residues within mitogen-activated protein kinases related to programmed cell death.20,21 The mitotic spindle biogenesis protein and septin proteins may be important proteins in mitosis,22 and the cAMP-dependent protein kinase in a G protein signaling pathway regulates morphological transition in A. oryzae.23
The fungal cell wall is a dynamic organelle that allows for cell growth and cell division during the life cycle of A. oryzae. The enzyme 1,3-β-glucanosyltranferase plays an active role in the biosynthesis of the cell wall, and cell wall glucanase is important for cell wall stability.24 Glycosyltransferase, transglycosidase and glycosidase generate cell wall polysaccharides,25 while glycosyl-phosphatidylinositol (GPI) anchor proteins are cell wall proteins that direct glycoproteins to the secretory pathway and glycosylation sites.26 The key enzymes for the synthesis of sterol or ergosterol as components of cell membranes are 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase, SAM-dependent methyltransferase, C-4 sterol methyl oxidase and C-8,7 sterol isomerase. Fatty acid desaturase plays a key role in the maintenance of the correct structure and functioning of biological membranes.27 Phosphatidylinositol synthase catalyzes the synthesis of the phospholipid phosphatidylinositol, which is not only a major constituent of biological membranes but also an active participant in the control of diverse cellular functions.28 Sphingoid base 1-phosphate phosphatase is a key regulator of the metabolism of sphingolipids, which are critical structural components.
It is generally assumed that A. oryzae spores are formed asexually. This study found that spore formation by A. oryzae 100-8 was lower than A. oryzae 3.042 (the phenotype comparisons shown in Fig. S4†), indicating that this process is influenced by a mutant gene (AO1008_05602). The gene that encodes meltrin protein had been reported to play an important role in the process of fertilization in other organisms.29 The levels of expression of other genes associated with spore formation had also been shown to be significantly decreased (Table S2†). The genes encoding α-1,3-glucanase (AO1008_01791) and the early sexual development (esdC) protein (AO1008_08823) are necessary for sexual development. Furthermore, 17-β-hydroxysteroid dehydrogenase (AO1008_04266) has the ability to interconvert estrogens and androgens and also androstenedione and testosterone.30 The brlA gene (AO1008_07995) mediates the developmental switch from the apical growth pattern of vegetative cells to the budding growth pattern of conidiophores.31
Flavors | A. oryzae 3.042 area (%) | A. oryzae 100-8 area (%) | ||||
---|---|---|---|---|---|---|
30 h | 36 h | 42 h | 30 h | 36 h | 42 h | |
Ketone | 3.94 | 2.11 | 0.83 | 36.99 | 4.03 | 1.49 |
Aldehyde | 13.87 | 11.74 | 0.1 | 4.16 | 70.18 | 42.61 |
Alcohol | 3.86 | 5.58 | 3.18 | 12.11 | 20 | 10.49 |
Ester | 0.3 | 0.2 | 0.56 | 0.19 | 1.4 | 1.65 |
Furan compound | 4.49 | 0.55 | 0.23 | 17.65 | 1.64 | 0.73 |
Phenol | 15.82 | 44.69 | 60.2 | 17.19 | 1.25 | 27.87 |
Hydrocarbon | 32.47 | 10.47 | 4.91 | 9.79 | 1.22 | 5.39 |
Acid | — | 0.06 | — | — | 0.15 | — |
Of the ketones detected, benzophenone was the most notable. It has a distinctive odor, sweet and fragrant, somewhat like a rose or a bay leaf, and was detected in the soy sauce koji fermented by both A. oryzae 100-8 and A. oryzae 3.042 during all three periods. The benzophenone content detected for A. oryzae 100-8 was 19.69% at 30 h, 3.83% at 36 h and 1.33% at 42 h, while that for A. oryzae 3.042 was 3.90% at 30 h, 2.00% at 36 h and 0.71% at 42 h. Based on its concentrations and low odor threshold values, benzophenone may partially contribute to the strongly fragrant odor of the koji of A. oryzae 100-8, especially at around 24 h. The threshold value was defined as the lowest concentration of a compound that can still be directly recognized by its odor.32
The high aldehyde content contributed greatly to the overall volatile flavors of A. oryzae 100-8. Remarkably, the aldehydes accounted for as much as 70.18% of the total odorants produced by A. oryzae 100-8 at 36 h and 42.61% at 42 h, giving it an overwhelming advantage over A. oryzae 3.042. Most of the aldehydes detected were aromatic, such as benzeneacetaldehyde, 2-phenyl-2-butenal, 2,4,6-trimethylbenzaldehyde, 2-phenylcrotonaldehyde, 5-methyl-2-phenyl-2-hexenal and so on. Benzeneacetaldehyde was one of the most typical aromatic aldehydes and contributed significantly to the high aldehyde content, producing a significant sweet and fruity fragrance; it is likely to be a major contributor to the strong aromatic and sweet flavors in soy sauce koji obtained through fermentation with A. oryzae 100-8, especially at 36 h and 42 h.
Furan compounds, characterized by a strong scented, sweet and in some cases burnt odor, are generally recognized as important aromatic substances that contribute greatly to the flavors of soy sauce. A. oryzae 100-8 produced more total furan compounds in koji than did A. oryzae 3.042, with a content of 17.65% at 30 h, 1.64% at 36 h and 0.73% at 42 h for A. oryzae 100-8 and 4.49% at 30 h, 0.55% at 36 h and 0.23% at 42 h for A. oryzae 3.042. The furan compounds detected were primarily 2-pentylfuran, 2,3-dihydrobenzofuran and 2-N-octylfuran. In particular, 2-pentylfuran was found in all three periods of koji fermentation in both A. oryzae 100-8 and A. oryzae 3.042. In view of their high threshold values, the higher percentage of volatile furan compounds in A. oryzae 100-8 koji may contribute significantly to the overall pleasant odor of soy sauce.33
The flavors arising from phenols, primarily guaiacol, 4-vinylguaiacol and 2,6-di-tert-butyl-4-methylphenol, were lower in A. oryzae 100-8 koji than in A. oryzae 3.042 koji. Guaiacol, with its sweet “potpourri” flavor, and 4-vinylguaiacol, with its clove and smoke flavors, were regarded as two important phenols in soy sauce fermentation; they could be generated from fiber or lignin in the materials. A. oryzae 3.042 koji had higher levels of phenols, with 35.82% at 30 h, 64.69% at 36 h and 90.20% at 42 h, while A. oryzae 100-8 koji had 17.19% at 30 h, 1.25% at 36 h and 27.87% at 42 h. The distribution of phenols in A. oryzae 100-8 tended to generate a more harmonious and pleasant combination of odors.
Acids were seldom found in the flavors of koji fermented with A. oryzae 100-8 and A. oryzae 3.042, except that 4-methyl-2-oxovaleric acid was detected at 36 h for A. oryzae 100-8 and both 4-methyl-2-oxovaleric acid and 2-methylbutyric acid were found at 36 h for A. oryzae 3.042. The acids found in the koji were primarily produced by redox reactions of the degradation products of amino acids. Considering the overall fermentation process, the acids contained in the soy sauce were mainly produced from the action of saccharomycetes and lactobacilli in brine fermentation.
Flavor formation in soy sauce koji is mainly the result of the metabolism of proteins, sugar and lipids. A. oryzae 100-8 produced flavors with a more balanced structure in terms of varieties and levels than did A. oryzae 3.042. As shown in Table S2,† A. oryzae 100-8 secreted significantly more acid proteases (including endopeptidases and aminopeptidases) than A. oryzae 3.042. Different parts of the peptides are hydrolyzed to amino acids by proteases, and the metabolism of these amino acids is the major source of the flavors. The branched-chain acids valine, leucine and isoleucine can be converted into acetoacetate and isobutanoate. The aromatic amino acids tyrosine, tryptophan and phenylalanine can be converted into phenylacetaldehyde, anthranilate and phenylacetate. Sulfuric flavors may be due to methionine and cysteine. Most of the genes involved in the metabolism of amino acids were highly expressed (Table S2†).
Transcriptome analysis revealed that the genes associated with glycolysis were highly expressed in A. oryzae 100-8 (Table S2†). Phosphofructokinase is a key regulatory enzyme in glycolysis; 3-phosphoglycerate kinase, a glycolytic enzyme, catalyzes the reciprocal transformation of 1,3-bis-phosphoglycerate and 3-phosphoglycerate.34 Enolase (AO1008_10057) is a ubiquitous enzyme that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate in glycolysis,35 while pyruvate kinase (AO1008_06139) catalyzes the conversion of phosphoenol-pyruvate to pyruvate and ATP in glycolysis.
The β-oxidation of fatty acids produces volatile flavor compounds and is of particular importance for the overall flavor system.36 Fatty acids are broken down to acetyl-coenzyme A (CoA), which is used in ketone formation.37 Some types of β-oxidation enzyme, for example 3-hydroxyacyl-CoA dehydrogenase, were highly expressed in A. oryzae 100-8. P-type ATPase is the enzyme of lipid pumps. The acyl-CoA synthetase catalyzes substrates to their CoA esters, which then enter the β-oxidation spiral (Table S2†).
After the characterization of the transcriptomes, six genes were randomly selected to confirm the results via qRT-PCR. The results of the qRT-PCR experiments showed that changes in the levels of expression of these genes followed similar trends to the transcriptome expression (Fig. 4).
These results may assist us to improve soy sauce flavors and shorten koji fermentation times in industrial production. However, the relationship between koji flavors and soy sauce flavors has not yet been fully ascertained. There are plans for further research in this area. In addition, the taste of koji should also be investigated alongside the volatile flavors to provide fuller information about the flavors; this is to be addressed shortly in another paper from our laboratory.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c4ra16819d |
This journal is © The Royal Society of Chemistry 2015 |