Yang Li*
School of Biomedical Engineering, Tianjin Medical University, Tianjin 300070, P. R. China. E-mail: liyang@tijmu.edu.cn
First published on 9th January 2015
In present work, influences of molar fraction and acyl chain length of lipids on the interaction between cationic nanoparticles (NP) and the lipid bilayer have been investigated via coarse-grained molecular dynamics simulations. It is found that the participation of the anionic lipids improves the NP–membrane interaction; however in the case of PC/PG mixed membrane, the bending of the membrane is merely dependent on the increase of molar fraction of charged lipids in the heterogeneous membrane because of the relatively slow diffusion of lipids in the membrane and the repulsive effect between charged lipids against their further aggregation around the NP. Besides, it is also found that the acyl chain length of lipids plays a crucial role on the NP-induced structural variation and morphology transition of the lipid bilayer. As a charged NP attaches to the membrane, a thin DPPC/POPG membrane is more vulnerable to these extracellular disturbances than a relatively thick DSPC/DOPG membrane. Different from the NP-induced lipid eyelid structure budding from the DSPC/DOPG membrane, the adsorption of a NP disrupts the DPPC/POPG membrane and evokes a water pore in the lipid bilayer, implying the translocation mechanism of a NP across the membrane could be mediated by the acyl chain length of lipids. These results are beneficial for an further understanding in the translocation mechanism of nanocarriers as drug delivery vehicles for cancer therapeutics.
The enrichment of anionic lipids in the membrane of cancer cells renders them more negatively charged compared to normal cell membranes which can be favorable for the interaction with cationic nanocarriers.8,9 Several studies reported that the adsorption of charged NPs could induce a local aggregation of lipids in the biomembrane10,11 and affect the motility of charged lipids in the heterogeneous membrane,6,12 which has been proposed to alter the morphology of the lipid bilayer, initiate the surface defect on the membrane, or even play a leading role in cell membrane disruption.13,14 Furthermore, an adsorbed NP could translocate across the biomembrane via some certain mechanism of intracellular uptake such as endocytosis8,15 or passive diffusion through a ruptured pore on the membrane.13,14 While the selectivity of cationic nanocarriers on cancer or normal cells might be directly correlated with the richness of negatively charged components in the cell membrane, the influence of anionic lipids and their molar fraction in the membrane on NP-induced structural transition of the lipid bilayer awaits consensus.4,6,16
These transmembrane mechanisms of NPs, either through endocytosis or through a passive diffusion, are mediated by the physicochemical properties of the lipid bilayer such as phase transition,17 bending rigidity18,19 and surface tension.18,20 These properties of the membrane are affected by the acyl chain length of lipids, which can be characterized as the thickness of the membrane.19,20 On one hand for those NP-induced bending of the membrane, the acyl chain length of lipids plays a positive role against the bending of the lipid bilayer, originating from the gain in the elastic energy of biomembranes.20,21 On another hand, these structural fluctuations such as induced defects or porosity in the membrane could vary with the motility of lipids with different acyl tail length,22 coupling to an effective drug delivery or some possible toxicities resulting from destroying the intact structure of cells.23 However, how the acyl chain length of lipids affects the NP-induced morphology changes of the membrane is yet far from understood.
Here molecular dynamics simulations were performed to obtain molecular-level insight into the influence of the molar fraction and the acyl chain length of lipids on the NP–biomembrane interactions. Heterogeneous membrane model composed of zwitterionic lipids and anionic lipids was employed as a mimic of the cancer cell membrane. Analysis on the mobility of individual lipids, membranes bending as well as the structural variations of the membrane were performed for a better understanding of the interaction between charged NPs and the heterogeneous membrane.
In most experimental studies on the interaction of charged NPs with the biomembrane, NPs are normally modified with surface ligand molecules that carry charged functional groups. Thus the surface charge density of NPs can be regulated by the surface functionalization of these charged groups.27,28 Here a cationic NP model of ∼6.8 nm was built as cationic nanocarriers, consisting of charged (Qda) beads for the surface part and nonpolar (Nda) beads for the inner part. Moreover, different surface charge densities (ρe) of NPs were used to improve the NP-induced bending of the membrane for different heterogeneous membrane systems. As the solvent, the standard MARTINI CG water model was used; therefore the polarity of water molecules and their electrostatic interaction with the charged NPs and lipids weren't considered in the simulations. System parameters used in the simulations can be found in Table 1.
A cubic periodic box with cell dimensions of 51.2 × 48.8 × 22.1 nm3 was constructed, containing a cationic NP, a patch of mixed lipid bilayer, CG water molecules and enough counterions for neutralizing the system. For facilitating the following discussion, the mid-plane of the lipid bilayer was defined as the x–y plane and introduced the z-axis which is perpendicular to the bilayer surface. The leaflet of membrane near to the NP was defined as outer leaflet and the other leaflet far from the NP as inner leaflet. A Berendsen isothermal–isobaric ensemble29 was used to maintain a constant temperature (T) of 325 K and a constant pressure (p) of 1 atm in the system. A cutoff of 1.2 nm was used for van der Waals interactions, and the Lennard–Jones potential was smoothly shift to zero from 0 to 1.2 nm to reduce the cutoff noise. Particle mesh Ewald summation (PME) was chosen with a cutoff of 1.2 nm, a grid spacing of 0.12 nm and fourth-order interpolation to represent the long-range electrostatic interaction. A time-step of 30 fs was used for integrating the equations of motion and a long time simulation of 600 ns was carried out for obtaining the final interaction trajectory. All the simulations had been performed with GROMACS 4.0.7 simulation package.30
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Fig. 1 Trajectory snapshots of the interaction between a cationic NP and the membrane with different molar fraction of PG lipids, in which blue lipids stand for DSPC molecules and red lipids, DOPGs. Insets (a–d) represent the equilibrium configuration of the lipid bilayer in absence of NPs; and insets (e–h) depict the bending of the membrane due to the adsorption of a charged NP. Images were created with VMD31. Inset (c) and (g) are reproduced from ref. 12 for a comparison. |
Driven by the electrostatic attraction, the aggregation of DOPGs around the NP comes into being in the rim of the wrap package of the membrane; and the protrusion of lipids becomes intensive with the increasing levels of DOPGs in the membrane. Here the radial distribution function (RDF) of DOPG lipids was calculated as a measure of the packing distribution of anionic lipids around the NP. The first stage of 5 ns in the interaction trajectory is regarded as the adsorption process of the NP on the membrane. After the NP attaches steadily to the membrane, RDF profiles of DOPGs in different time period were obtained to characterize the organizing transition of anionic lipids in the membrane. Shown in Fig. 2, the distribution of DOPGs around the NP becomes concentrated over time; consequently, the maximum peak of the RDF profile of DOPGs presents a left shift gradually after a NP attaches to the membrane. These changes of RDFs indicate the aggregation of DOPGs occurs around the NP, in line with the configuration of a visualized clustering of DOPGs around the NP in Fig. 1.
Compared to the pure DSPC membrane, the presence of mixed DOPGs improves the bending of the lipid bilayer indeed. However, an increasing molar fraction of DOPGs seemingly doesn't promote a further wrap of the membrane towards the NP any more. As shown in Fig. 1f–h, there is no significant morphological difference between these mixed membranes with different molar fractions of DOPGs. All DSPC/DOPG membranes share a similar bending deformation and no full wrap to the NP occurs even in a long time simulation of 600 ns. The evolution of RDFs suggests the wrap of the membrane could be mediated by the aggregation of DOPG molecules, which is associated with the lateral diffusion of lipids in the membrane. Hereby the mean square displacement (MSD) of DOPGs was calculated as a measure of their lateral diffusion in the membrane (Fig. 3). Moreover, diffusion coefficients of DOPGs (DDOPG) before/after the NP–membrane interaction were obtained by fitting the slope of MSDs as a qualitative description on the motilities of lipids (Table 2).
Molar fractions of lipids | |||
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5![]() ![]() |
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Before | 5.51 ± 0.28 | 4.78 ± 0.36 | 5.10 ± 0.21 |
After | 4.56 ± 0.46 | 4.54 ± 0.69 | 4.77 ± 0.41 |
Reported in recent researches, the movement of an individual lipid is strongly correlated with those of its neighbors, which leads to a long-range flow-like diffusion of lipids in the membrane.32 Compared to the fast wrap process of the membrane due to the adsorbed NP in the simulation (time scales of tens of nanoseconds), the lateral diffusion of lipids is a so slow process that DOPG lipids in the distance cannot aggregate rapidly towards the NP in a short time to participate the bending of the membrane; thereby an increase of molar fraction of lipids cannot guarantee a further bending of the membrane in the simulation. Besides the electrostatic attraction of a charged NP not only affects the movement of DOPGs in the membrane but also alters the morphology of the lipid bilayer. These NP-induced effects promote those lipids at the site of the NP's localization binding tightly on the surface of the NP. The motilities of these binding lipids in the wrap package are constrained, conducing to the decrease of DDOPG before/after the NP–membrane interaction in Table 2.
Besides the slow lateral diffusion of lipids, this insignificant improving effect of an increasing level of DOPGs on the bending of the membrane also results partly from the repulsion between charged DOPG molecules. The movement of individual DOPGs in presence of the NP has been obtained for giving a further interpretation for these results mentioned above. The lateral motion of DOPGs in the outer leaflet of the membrane was defined as the normal projected displacement of center of mass (COM) of DOPGs in the x–y plane. The positions of DOPGs in the starting configuration are chosen as the initial reference positions; thereby the lateral motion trajectory of an individual DOPG relative to its reference position can be presented as a vector in Fig. 4. The computing method of lateral displacements of DOPGs is similar as that used in ref. 12.
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Fig. 4 Lateral displacements of DOPGs in the outer leaflet at different times in the trajectory where the direction of the vector denotes the direction of the motion of a corresponding DOPG molecule, and the length of the vector, the displacement of the motion of a DOPG. Panels from left to right show the data at time of 5, 20, 40, 60 ns with respect to the reference time respectively. Middle panels for the molar fraction 5![]() ![]() |
The lipid dynamics of the collective flow-like pattern32,33 far from the NP as well as the oriented lateral diffusion around the NP has been exhibited in Fig. 4 except for some disorder flows of individual lipids. It is found that the oriented lateral diffusion of DOPGs is only presented as a local phenomenon in the membrane. The electrostatic attraction of the NP accounts for the oriented motion of those DOPGs towards the NP, resulting in the aggregation of DOPGs around the NP. On one hand, these lipids clustering around the NP screen the range of electrostatic interaction of the NP and weaken the attraction of NP to the DOPGs in the distance; on the other hand, these aggregated DOPGs repel each other because of their negatively charged head groups, excluding more DOPGs moving towards the NP. These results can also be supported by the changes of RDF profiles of DOPGs in Fig. 2. The distinction between the RDFs of DOPGs becomes blurred over time, implicating the aggregation of DOPGs around NP will achieve a equilibrium state gradually. The repulsion between DOPGs suppresses the aggregation of charged lipids, accounting for the insignificant improving effect of an increasing level of DOPGs on the bending of the membrane.
Different from our previous simulations where the charged NP of ρe = 1.8e per nm2 was fully wrapped by the mixed DSPC/DOPG membrane,12 here the charged NP of ρe = 1.5e per nm2 was only wrapped partially even under the conditions of a high molar fraction of charged lipids involving in the lipid bilayer. These results suggest that the wrap of the membrane, driven by a nonspecific electrostatic interaction, would be more sensitive to the surface change density of NPs than to the influence of the molar fraction of charged lipids in the membrane. Although the differences of the bending deformation of the membrane are not obvious in the different systems, the binding energy of a charged NP with DOPGs varies considerably. Shown in Fig. 5, the electrostatic energy between the charged NP and lipids increases as the molar fraction of DOPGs increases in the membrane, suggesting the increase of molar fraction of lipids in a mixed membrane could also be conducive to enhance the protrusion of lipids and facilitate the membrane wrap to some extent.12
As shown in Fig. 6, the adsorption of a charged NP deforms the DPPC/POPG membrane. And then, the electrostatic attraction disturbs the lipids and thins the membrane, resulting in water defects existing in the neck of the wrap package (Fig. 6c). Several lipids in the inner leaflet of the membrane tilt into the defect, which aggravate those defects evolving into a hydrophilic pore (Fig. 6e). Different from those “self-healing” defects in the DSPC/DOPG membrane reported in ref. 12, the NP-induced disruption here renders the DPPC/POPG membrane unable to rehabilitate itself, implicating that a thinner lipid bilayer structure could be more vulnerable to an external stimulation.14
The NP-induced destabilization on the membrane results partly from transverse tilting of lipids in the inner leaflet into the water defects and partly from the protrusion of lipids in the outer leaflet.12,23 Several additional biased molecular dynamics were performed to investigate the structural variation of the membrane affected by the factor of the acyl chain length of lipids. Firstly, for inspecting the structural variation of the membrane induced by the transverse tilting of lipids, a PG lipid in the inner leaflet was restrained to move into the inner of the membrane to reproduce the defect in the membrane (Fig. 7). The motion of this reference PG lipid was restrained by a imposed harmonic potential on its headgroup on z coordinate. In the case of the DSPC/DOPG membrane, the original position of the reference DOPG lipid, at the distance of 2.27 nm to the center of the DSPC/DOPG membrane, was chosen as the initial restrained position; and the initial position of the reference POPG lies at the distance of 2.03 nm to the center of the DPPC/POPG lipid bilayer. A force constant of 2500 kJ mol−1 nm−2 was used with a spacing of 0.1 nm between the centers of the biasing potentials.12 A series of separate biased simulations were performed for 6 ns per simulation window.
Shown in top panels in Fig. 7, it is clearly shown that the reversed inclusion of the reference lipid disturbs the symmetrical structure of the lipid bilayer. The exposure of the lipid hydrophilic headgroup in the hydrophobic interior of the membrane induces the formation of a water defect to keep the headgroup solvated. The water density maps show that water molecules present around the headgroup of the reference lipid in the inner leaflet of the lipid bilayer (Fig. 7, bottom panels). This bulge of water into the hydrophobic core of the bilayer is accompanied by the thinning deformation of the membrane, as shown in the phospholipids' density maps (Fig. 7, middle panels). The defect induced by the transverse tilting of the DOPG isn't apparent in the DSPC/DOPG membrane, where the depth of the biggest defect occurring in the biased simulation is just ∼0.4 nm. In contrast, the NP-induced destabilization in the DPPC/POPG membrane is more obvious, where the depth of the biggest defect occurring in the biased simulation is ∼1.1 nm. These discrepancies indicate that a DPPC/POPG membrane is more susceptible to the transverse tilting of lipids than a DSPC/DOPG lipid bilayer.
Besides the transverse tilting of lipids, the NP-induced protrusion of lipids also plays a role on the morphology transition of the membrane, which is affected by the acyl chain length of lipids as well. Instead of being fully wrapped in a lipid eyelid structure by the plasma membrane,12,34 here the charged NP evokes the water pore in the DPPC/POPG membrane (Fig. 6e). Free energy changes of the protrusion of PG lipids were estimated for giving an explanation to the origin of these structural discrepancies. The protrusion of lipids was simplified as the restrained motion of reference PG lipids moving from the out leaflet of the membrane into the water phase. Umbrella sampling approach was used to obtain the potential of mean force (PMF)35 as a energetic function of the distance between the pulled lipids and the center of the membrane. A series of separate biased simulations were performed for 6 ns per simulation window in which headgroups of lipids were restrained to a given distance from the center of the bilayer by a harmonic restraint on the z-coordinate only. A force constant of 2500 kJ mol−1 nm−2 was used with a spacing of 0.1 nm between the centers of the biasing potentials to ensure the overlapping of the z histograms between adjacent umbrella sampling windows12 (see ESI, Section 3†). After the restrained simulations were completed, the unbiased PMF was obtained by using the weighted histogram analysis method.36
The PMF profiles of POPG lipids along the pulled coordination are exhibited in Fig. 8. The exposure of lipids in the water is a free energy unfavorable process; thus the restrained motion of the POPG cluster could enhance the protrusion of its neighboring lipids out of the membrane to preserve its hydrophobic microenvironment. In the case of one POPG lipid in the pulled group (Fig. 8a), the PMF profile rises smoothly at the beginning because most hydrophobic part of lipid tails still remain in the membrane in this stage. And then, the PMF profiles present a steep upward trend due to the energy penalty originating partly from the hydrophobic repulsion of the lipid tails in the water and partly from the elasticity energy of the membrane deformation. Nevertheless, the reference lipid can be pulled into water eventually because the hydrophobic interaction of the reference POPG with its neighboring lipids is too weak to deform the membrane morphology significantly. Consequently the PMF profile drop steeply when the POPG lipid was moved into water. The PMF profile of one POPG in Fig. 8a shares a similar varying tendency of PMF profiles for one or four pulled DOPGs in the DSPC/DOPG membrane, yet the PMF profile of a POPG cluster is quite different from the PMF of pulling a DOPG cluster into the water.12 When the number of reference POPGs increases to three molecules (Fig. 8b), the pulling of lipids makes the DPPC/POPG membrane buckling upward to form a lipid tether of high curvature structure.37,38 Neither a hydrophilic pore13 nor a lipid eyelid structure12,39 appears in the DPPC/POPG membrane in the biased simulations.
These differences of PMF profiles between the DOPG and POPG lipid indicate that the acyl chain length of lipids has a crucial impact on the changes of the membrane morphology due to the protrusion of lipids. For the DSPC/DOPG membrane, the thick lipid layer make a guarantee for a strong hydrophobic interaction between lipids in the DSPC/DOPG membrane, which allows for more flexibility for the protrusion of lipids transiting further into a closed loop budding structure in the DSPC/DOPG lipid bilayer. This structural transition preserves the hydrophobic microenvironment of biomembranes effectively, which alleviates partly the membrane stress of a high curvature form in the neck region and to some extent moderates the elasticity energy cost of the membrane deformation against the gain of the adhesion energy as well.12 Compared to the DSPC/DOPG membrane, the DPPC/POPG lipid layer cannot offer a flexible environment for the protrusion of lipids because of its thin hydrophobic inner layer. Besides, the thin DPPC/POPG lipid layer suffers from a less elasticity energy penalty when the membrane bends itself.38,40 These factors benefit the formation of a lipid tether rather than a lipid eyelid in the wrap package of the DPPC/POPG membrane. Yet the high curvature folding of a lipid tether is not conducive to alleviate but aggravates the stress in the wrapping neck of the membrane. As a result, it's quite probable for a DPPC/POPG membrane that the lipid bilayer would be disrupted if the electrostatic attraction of charged NPs is large enough (Fig. 6).
Although the adsorption of a charged NP of ρe = 1.8e per nm2 cannot result in any hydrophilic pore in the DSPC/DOPG membrane,12 the existence of transient water defects in the inner leaflet increases the probability of entry of water molecules into the interior of the DSPC/DOPG membrane after all.23 Considering the dominant role of the electrostatic attraction in the charged NP–membrane interaction, a positively charged NP with larger surface charges density (ρe = 2.2e per nm2) was employed for re-visiting this issue of the NP-induced disruption on the thick DSPC/DOPG membrane (Fig. 9).
As expected, the membrane disruption can be found on the DSPC/DOPG lipid bilayer during the wrapping process (Fig. 9a–e). Unlike the stable pore forming in the DPPC/POPG membrane (Fig. 6e), the hydrophilic pore in the DSPC/DOPG membrane can close spontaneously by means of the membrane fusion; and the membrane recovers back into its original integrity at last (Fig. 9f–h). These phenomena corroborate the protection of long acyl chain of lipids on the structural variation of the membrane from those extracellular disturbances as well. Also, the disruption of the DSPC/DOPG membrane induced by a NP of large surface charge density gives an indirect support for some experimental results, where neutral and slightly charged NPs did not alter the integrity of the blood–brain barrier in rats; whereas highly charged nanoparticles did regardless of whether they were positively or negatively charged.41 The translocation mechanism of a NP across the membrane could be mediated by the acyl chain length of lipids or the segregation phase of the membrane. These relevant results could be applied in the design of specific nanocarriers for various biomedical applications.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c4ra15249b |
This journal is © The Royal Society of Chemistry 2015 |