Piyush
Panini
and
Deepak
Chopra
*
Crystallography and Crystal Chemistry Laboratory, Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Madhya Pradesh, 462066 India. E-mail: dchopra@iiserb.ac.in; Fax: +91-0755-6692392
First published on 20th August 2015
The knowledge about the prevalence of weak interactions in terms of the nature and energetics associated with their formation is of significance in organic solids. In the present study, we have systematically explored the existence of different types of intermolecular interactions in ten out of the fifteen newly synthesized trifluoromethyl derivatives of isomeric N-methyl-N-phenylbenzamides. Detailed analyses of all the crystalline solids were performed with quantitative inputs from interaction energy calculations using the PIXEL method. These studies revealed that in the absence of a strong hydrogen bond, the crystal packing is mainly stabilized by a cooperative interplay of weak C–H⋯OC, C–H⋯π, and C(sp2)/(sp3)–H⋯F–C(sp3) hydrogen bonds along with other related interactions, namely, π⋯π and C(sp3)–F⋯F–C(sp3). It is of interest to observe the presence of short and directional weak C–H⋯O
C hydrogen bonds in the packing, having a substantial electrostatic (coulombic + polarization) contribution towards the total stabilization energy. The C(sp3)–F group was recognized in the formation of different molecular motifs in the crystal packing as utilizing different intermolecular interactions. The contribution from electrostatics among the different weak hydrogen bonds was observed in the decreasing order: C–H⋯O
C > C–H⋯F–C(sp3) > C–H⋯π. Furthermore, there was an increase in the electrostatic component with a concomitant decrease in the dispersion component for the shorter and directional hydrogen bonds.
In this regard, a library of trifluoromethyl-substituted N-methyl-N-phenylbenzamides were synthesized (Scheme 1) by replacing the H-atom connected to a N-atom with a methyl group, and then their crystal structures were analyzed to investigate the nature and role of the weak interactions (of the type C–H⋯F–Csp3, Csp3–F⋯F–Csp3) in the crystal packing. Thus, these compounds now eliminate the possibility of formation of any strong H-bond. The substitution of the hydrogen atom with the methyl group completely alters the molecular conformation from a trans to cis geometry relative to that in benzanilides.43–45 The change in the fluorescence and luminescence behavior with the change in its molecular conformation has been very well studied by different research groups.46–48 To obtain a better understanding of the nature of the different intermolecular interactions, the evaluation of the stabilization energy of these interactions is of prime focus in the present study. The contribution of the possible different interactions towards the crystal packing was quantified by PIXEL.49 The PIXEL method provides important insights towards understanding the crystal packing by partitioning the interaction energy or cohesive energy into their coulombic, polarization, dispersion and repulsion contributions. To gain a better insight into the different weak intermolecular interactions present in the crystal packing, selected molecular pairs (extracted from the crystal packing connected with different intermolecular interactions) were analyzed. This is in contrast to the routine practice of providing details on the crystal packing related to the arrangement of molecules50,51 on the basis of pure geometry with no inputs from energetics. On the contrary, in reality, it is the latter that contributes immensely towards crystal formation.
All the synthesized compounds were characterized by FTIR [Fig. S1(a)–(o), ESI†], 1H NMR [Fig. S2(a)–(o), ESI†] spectroscopy. The melting points were recorded using DSC for all the solid compounds, and these are given in the ESI,† [Fig. S3(a)–(j)]. Powder X-ray diffraction (PXRD) data were recorded for all the solid compounds and then compared with the simulated PXRD patterns [Fig. S4(a)–(j), ESI†]. Details about the product yields, melting points and spectroscopy data of all the synthesized compounds are listed in Section S1 in the ESI.†
Details on all the crystallization experiments of all the solid compounds from the different solvents and solvent mixtures are presented in the ESI,† (Table S1). Single crystals of all the solids except NM30 were obtained from a slow evaporation method. Compound NM30 was observed to appear as a single crystal in the sample vial at a temperature below 25 °C.
All the crystal structures were solved by direct methods using SIR92.52 The non-hydrogen atoms were refined anisotropically and the hydrogen atoms bonded to C atoms were positioned geometrically and refined using a riding model with Uiso(H) = 1.2Ueq [C(sp2)] and Uiso(H) = 1.5Ueq [C(sp3)]. Compound NM30 was observed to be twinned in two orientations with the ratio for the BASF values being 0.59:
0.41. The twin law and the corresponding HKLF5 file were generated using the ‘TwinRotMat’ tool in WinGx53 and the refinement was performed with the HKLF5 file using SHELXL2013.
The disorder associated with the CF3 group was modelled with the PART command in two independent orientations (the major component was labeled ‘A’) in SHELXL 2013.54 Molecular and packing diagrams were generated using Mercury 3.3.55 Geometrical calculations were carried out using PARST56 and PLATON.57Table 1 lists all the crystallographic and refinement data. Lists of selected dihedral angles are presented in Tables 2 and 3.
DATA | NM02 | NM03 | NM10 | NM30 | NM11 |
---|---|---|---|---|---|
Formula | C15H12NOF3 | C15H12NOF3 | C15H12NOF3 | C15H12NOF3 | C16H11NOF6 |
Formula weight | 279.26 | 279.26 | 279.26 | 279.26 | 347.26 |
CCDC No. | 1025677 | 1025678 | 1025679 | 1027431 | 1025680 |
Crystal system; space group | Monoclinic; C2/c | Monoclinic; P21/c | Orthorhombic; Pbca | Monoclinic; P21/c | Monoclinic; P21/c |
a (Å) | 35.8393(17) | 15.1633(5) | 9.6555(7) | 23.731(5) | 8.9803(4) |
b (Å) | 10.6270(4) | 9.9603(3) | 13.7420(11) | 8.3394(15) | 10.8526(4) |
c (Å) | 15.1660(7) | 17.7768(6) | 19.3339(15) | 13.706(2) | 14.8181(5) |
α (°)/β (°)/γ (°) | 90/114.399(5)/90 | 90/97.269(2)/90 | 90/90/90 | 90/106.707(12)/90 | 90/92.763(3)/90 |
Volume (Å3)/density (g cm−3) | 5260.3(4)/1.410 | 2663.27(15)/1.393 | 2565.3(3)/1.446 | 2597.9(8)/1.428 | 1442.49(10)/1.599 |
Z/Z′ | 16/2 | 8/2 | 8/1 | 8/2 | 4/1 |
F(000)/μ (mm−1) | 2304/0.118 | 1152/0.116 | 1152/0.121 | 1152/0.119 | 704/0.153 |
θ (min, max) | 2.34, 25.00 | 1.35, 27.58 | 2.79, 25.00 | 0.90, 25.01 | 2.75, 25.00 |
h min,max, kmin,max, lmin,max | −42, 42; −12, 12; −18, 18 | −18, 19; −12, 11; −23, 18 | −11, 11; −16, 16; −22, 22 | −28, 28; −9, 9; −16, 16 | −10, 10; −12, 12; −17, 17 |
No. of total ref./unique ref./obs. ref. | 25![]() |
22![]() |
12![]() |
4556/4556/3759 | 13![]() |
No. of parameters | 391 | 395 | 211 | 364 | 236 |
R_all, R_obs | 0.0635, 0.0417 | 0.0659, 0.0490 | 0.0580, 0.0398 | 0.0522, 0.0403 | 0.0434, 0.0368 |
wR2_all, wR2_obs | 0.1008, 0.0888 | 0.1356, 0.1259 | 0.1028, 0.0901 | 0.0897, 0.0854 | 0.0982, 0.0933 |
Δρmin,max(e Å−3) | −0.244, 0.215 | −0.357, 0.381 | −0.221, 0.207 | −0.182, 0.223 | −0.237, 0.308 |
G. o. F | 1.050 | 1.061 | 1.055 | 1.063 | 1.043 |
DATA | NM12 | NM22 | NM23 | NM31 | NM33 |
---|---|---|---|---|---|
Formula | C16H11NOF6 | C16H11NOF6 | C16H11NOF6 | C16H11NOF6 | C16H11NOF6 |
Formula weight | 347.26 | 347.26 | 347.26 | 347.26 | 347.26 |
CCDC No. | 1025681 | 1025682 | 1025683 | 1025684 | 1025685 |
Crystal system; space group | Monoclinic; P21/c | Monoclinic; P21/c | Monoclinic; P21/c | Monoclinic; P21/c | Triclinic P![]() |
a (Å) | 9.0978(7) | 8.3764(5) | 11.2958(5) | 12.3185(10) | 8.9977(4) |
b (Å) | 22.1735(15) | 23.2362(17) | 14.0246(4) | 7.9401(5) | 10.8088(5) |
c (Å) | 7.9449(5) | 7.9755(6) | 10.4868(3) | 15.4912(12) | 16.6720(9) |
α (°)/β (°)/γ (°) | 90/101.946(4)/90 | 90/103.567(2)/90 | 90/115.258(4)/90 | 90/90.168(4)/90 | 105.291(2)/98.901(2)/102.688(2) |
Volume (Å3)/density (g cm−3) | 1568.02(19)/1.471 | 1509.00(18)/1.529 | 1502.48(9)/1.535 | 1515.19(19)/1.522 | 1486.36(12)/1.552 |
Z/Z′ | 4/1 | 4/1 | 4/1 | 4/1 | 4/2 |
F(000)/μ (mm−1) | 704/0.141 | 704/0.146 | 704/0.147 | 704/0.146 | 704/0.149 |
θ (min, max) | 1.84, 25.00 | 2.65/25.00 | 2.47/25.00 | 2.63/25.00 | 1.30/30.67 |
h min,max, kmin,max, lmin,max | −10, 9; −22, 26; −9, 9 | −9, 8; −27, 27; −9, 9 | −13, 13; −16, 16; −12, 12 | −14, 13; −9, 9; −18, 18 | −11, 12; −15, 15; −23, 14 |
No. of total ref./unique ref./obs. ref. | 13![]() |
21![]() |
14![]() |
11![]() |
30![]() |
No. of parameters | 247 | 246 | 250 | 246 | 491 |
R_all, R_obs | 0.0637, 0.0482 | 0.0534, 0.0410 | 0.0499, 0.0411 | 0.0590, 0.0384 | 0.0602/0.0430 |
wR2_all, wR2_obs | 0.1388, 0.1285 | 0.1059, 0.0993 | 0.1065, 0.0993 | 0.0930, 0.0865 | 0.1143/0.1040 |
Δρmin,max(e Å−3) | −0.222, 0.363 | −0.343, 0.497 | −0.339, 0.398 | −0.239, 0.215 | −0.380, 0.446 |
G. o. F | 1.066 | 1.033 | 1.066 | 1.034 | 1.039 |
Angle 1 (°) plane1/2 | Angle 2 (°) plane1/3 | Angle 3 (°) plane2/3 | Geometry of C(sp3)–H⋯O (Å, °) | |
---|---|---|---|---|
(′) denotes the second molecule in the asymmetric unit. | ||||
NM00 |
67.4(1)
67.3 |
47.1(1)
32.9 |
62.5(1)
60.1 |
2.47, 93
2.42, 90 |
NM02 |
66.9(1)/64.9(1)′
70.3/69.9′ |
46.0(1)/53.5(1)′
34.3/36.6′ |
65.4(1)/62.6(1)′
70.9/62.1′ |
2.32, 102/2.39, 97′
2.50, 87/2.42, 91′ |
NM03 |
58.6(1)/71.9(1)′
65.5/67.0 |
44.0(1)/43.5(1)′
39.2/38.8 |
59.8(1)/70.2(1)′
57.1/61.0 |
2.31, 100/2.27, 104′
2.23, 106/2.51, 86′ |
NM10 |
69.8(1)
76.3 |
39.2(1)
38.9 |
67.9(1)
77.1 |
2.28, 102
2.33, 97 |
NM30 |
57.4(1)/55.5(1)′
68.0/65.5 |
43.7(1)/43.4(1)′
36.4/32.7 |
48.8(1)/53.6(1)′
58.4/54.8 |
2.37, 94/2.65, 80′
2.37, 96/2.46, 87 |
NM11 |
1.7(1)
4.6 |
84.9(1)
84.4 |
85.6(1)
85.5 |
— |
NM12 |
73.7(1)
76.1 |
58.9(1)
39.4 |
84.4(1)
77.5 |
2.56, 87
2.32, 98 |
NM22 |
62.3(1)
67.7 |
65.4(1)
33.9 |
64.8(1)
59.1 |
2.41, 97
2.42, 91 |
NM23 |
69.1(1)
66.3 |
50.5(1)
34.6 |
66.3(1)
58.5 |
2.34, 102
2.43, 90 |
NM31 |
61.4(1)
67.9 |
61.2(1)
59.8 |
61.5(1)
57.8 |
2.43, 92
2.24, 106 |
NM33 |
69.5(1)/72.9(1)′
65.9/68.6 |
34.1(1)/62.4(1)′
38.3/46.5 |
56.7(1)/65.5(1)′
57.6/62.3 |
2.38, 94/2.40, 98′
2.37, 97/2.42, 98′ |
Ref. code | Space group, Z | Cell parameters, a, b, c (Å)/α, β, γ (°) | Angle 1 (°) | Angle 2 (°) | Angle 3 (°) |
---|---|---|---|---|---|
43Azumaya et al., 1994; 65Cockroft et al., 2007. | |||||
JAZJOJ1043 (NM00) | Pbca, Z = 8 | 12.5881, 12.3092, 14.6542/90, 90, 90 | — | — | — |
YEGKIE43 | P21nb, Z = 4 | 11.308(1), 15.878(2), 6.876(5)/90, 90, 90 | 70.8 | 36.7 | 65.0 |
YEGLAX43 |
P![]() |
11.602, 12.766(4), 7.372(1)/92.19(3), 104.93(2), 137.31(1) | 72.6 | 62.1 | 83.3 |
YEGKEA43 | P21/a, Z = 4 | 13.257(7), 13.234(11), 8.005(1)/90, 98.01(1), 90 | 65.9 | 76.6 | 62.8 |
YEGKOK43 | P21/n, Z = 4 | 14.909(1), 6.795(2), 13.358(1)/90, 98.46(1), 90 | 67.5 | 43.7 | 75.2 |
YEGJEY43 | Cc, Z = 4 | 15.250(3), 7.502(1), 13.733(3)/90, 106.77(2), 90 | 1.06 | 85.5 | 85.1 |
DIBGIF65 | P21/n, Z = 4 | 7.123(3), 16.792(8), 13.785(7)/90, 102.881, 90 | 16.5 | 85.3 | 84.3 |
DIBGAX65 | Pc, Z = 8, Z′ = 4 | 11.1542(10), 8.4970(7), 31.528(3)/90, 95.122(2), 90 | 11.0 | 87.7 | 76.9 |
The lattice energies (Table 4) of all the compounds were calculated by the PIXELC module in the CLP computer program package (version 10.2.2012), the total energy being partitioned into their coulombic (Ecoub), polarization (Epol), dispersion (Edisp) and repulsion (Erep) contributions. For the calculations, accurate electron densities of the molecules were obtained at MP2/6-31G** with GAUSSIAN0959 with H atoms at their neutron value. In the case of disordered molecules, the molecular conformation with the maximum population was considered for the calculation. The interaction energy of the selected molecular pairs, extracted from the crystal packing and related by the corresponding symmetry element, was also calculated by the PIXEL method (from the mlc file after the calculation). The total interaction energy was partitioned into their coulombic (Ecoub), polarization (Epol), dispersion (Edisp) and repulsion (Erep) contributions. These are listed in Table 5 along with the selected intermolecular interactions connecting the two molecules in the molecular pair. The % dispersion energy contribution (% Edisp) towards the total stabilization energy was calculated as follows:
%Edisp = [Edisp/(Ecoub + Epol + Edisp)] × 100; |
E Coul | E Pol | E Disp | E Rep | E Tot | |
---|---|---|---|---|---|
a Molecules exist in trans conformation. | |||||
NM00 | −30.3 | −15.5 | −123.0 | 65.5 | −103.3 |
NM02 | −38.0 | −14.8 | −120.7 | 66.3 | −107.2 |
NM03 | −42.3 | −16.0 | −119.6 | 75.1 | −102.8 |
NM10 | −45.5 | −16.4 | −122.4 | 69.4 | −114.9 |
NM30 | −35.5 | −13.4 | −122.9 | 66.4 | −105.5 |
NM11 | −34.6 | −13.9 | −122.9 | 64.3 | −107.1 |
NM12 | −36.4 | −13.5 | −97.9 | 46.0 | −101.9 |
NM22 | −46.7 | −19.7 | −119.6 | 77.2 | −108.7 |
NM23 | −40.8 | −15.9 | −122.7 | 70.9 | −108.5 |
NM31 | −38.6 | −12.8 | −111.2 | 57.2 | −105.4 |
NM33 | −45.7 | −16.8 | −125.7 | 78.8 | −109.3 |
YEGLAX | −35.2 | −13.5 | −129.2 | 67.0 | −117.8 |
YEGKEA | −30.3 | −15.6 | −116.4 | 61.8 | −100.4 |
YEGKOK | −35.9 | −14.8 | −127.4 | 71.9 | −106.2 |
YEGJEYa | −32.8 | −13.6 | −142.6 | 78.5 | −110.5 |
Pair/motifa | Symmetry code | Centroid-centroid distance (Å) | E Coul | E Pol | E Disp | E Rep | E Tot | DFT-D2/B97-D (BSSE corrected) | Possible involved interactionsc | Geometry (Å/°) D(D⋯A), d(H⋯A), ∠D–H⋯A |
---|---|---|---|---|---|---|---|---|---|---|
a Arranged in descending order of energy. b Values in parenthesis represent % dispersion energy contribution (%Edisp) towards the total stabilization, % electrostatic contribution (%Eelec) = 100 − %Edisp. c Cg1 and Cg2 refer to the centre of gravity for the phenyl rings C1–C6 and C7–C12, respectively. | ||||||||||
NM00 (Pbca, Z′ = 1; ref. code: JAZJOJ10) | ||||||||||
I | −x + 3/2, y + 1/2, z | 6.320 | −9.1 | −7.7 | −33.1 (66) | 25.4 | −24.5 | −28.4 |
C6–H6⋯O1
C14–H14C⋯C5 (π) |
3.271(1)/2.41/136
3.757(1)/2.98/129 |
II | −x + 1/2, −y + 1/2, −z + 1 | 6.877 | −5.3 | −2.1 | −25.7 (78) | 13.6 | −19.6 | −24.3 |
C3–H3⋯C9 (π)
C2–H2⋯C11 (π) H14A⋯H9 |
3.911(1)/2.96/147
3.664(1)/2.99/121 2.38 |
III | x−1/2, y, −z + 3/2 | 7.885 | −5.0 | −2.5 | −19.6 (72) | 9.8 | −17.2 | −19.7 |
C12–H12⋯C4 (π)
C14–H14A⋯C3 (π) |
3.880(1)/2.98/140
3.787(1)/2.97/133 |
IV | x, −y + 1/2, z−1/2 | 7.397 | −4.5 | −2.5 | −11.5 (62) | 4.7 | −13.9 | −15.8 |
C9–H9⋯C2 (π)
C9–H9⋯O1 |
4.082(1)/3.14/147
3.361(1)/2.89/106 |
V | −x + 2, y + 1/2, −z + 3/2 | 9.167 | −3.7 | −1.8 | −8.8 (62) | 4.2 | −10.1 | −11.3 | C4–H4⋯O1 | 3.907(1)/2.86/163 |
VI | −x + 2, −y + 1, −z + 1 | 7.527 | 0.6 | −1.1 | −15.4 (97) | 5.8 | −10.1 | −11.2 | C10–H10⋯C4 (π) | 3.936(1)/3.18/128 |
VII | −x + 3/2, −y + 1, z−1/2 | 9.065 | −1.8 | −0.6 | −7.9 (77) | 2.9 | −7.3 | −8.4 |
C10–H10⋯C6 (π)
C10–H10⋯C5 (π) |
4.037(1)/3.11/144
3.836(1)/3.18/120 |
NM02 (C2/c, Z′ = 2) | ||||||||||
I 1⋯1 | −x + 1/2, −y + 1/2, −z | 7.800 | −17.8 | −5.4 | −30.5 (57) | 18.6 | −35.1 | −43.2 |
C12–H12⋯O1
C14–H14B⋯O1 |
3.790(3)/2.77/158
3.610(3)/2.83/129 |
II 2⋯2 | −x + 1, y, −z + 1/2 | 5.505 | −8.8 | −4.6 | −44.2 (77) | 26.1 | −31.5 | −31.0 |
C4′⋯C4′ (π⋯π)
C5′⋯C5′ (π⋯π) C5′–H5′⋯C11′ (π) |
3.431(2)
3.393(2) 3.772(2)/2.78/153 |
III 1⋯2 | x, −y, z + 1/2 | 6.175 | −14.5 | −6.0 | −30.1 (59) | 19.5 | −31.1 | −35.4 |
C8–H8⋯O1′
C6′–H6′⋯F1 C8′––H8′⋯F1 |
3.393(2)/2.46/144
3.313(2)/2.43/138 3.400(3)/2.65/126 |
IV 1⋯1 | −x + 1/2, y + 1/2, −z + 1/2 | 7.260 | −11.4 | −4.6 | −36.2 (69) | 22.2 | −30.0 | −35.3 |
C10–H10⋯O1
C5–H5⋯Cg2 (π) |
3.429(3)/2.67/127
3.670(2)/2.65/157 |
V 1⋯2 | x, y, z | 5.450 | −6.3 | −4.8 | −23.7 (68) | 12.4 | −22.4 | −27.9 |
C2′–H2′⋯O1
C15–F1⋯F1A′–C15′ |
3.356(3)/2.45/141
2.823(2)/98(1)/158(1) |
VI 1⋯2 | −x + 1/2, −y + 1/2, −z | 8.499 | −8.3 | −4.0 | −14.9 (55) | 9.5 | −17.6 | −18.2 |
C11–H11⋯O1′
C12–H12⋯O1′ C14–H14B⋯F1A′ |
3.312(3)/2.58/125
3.428(2)/2.84/115 3.623(7)/2.68/146 |
VII 1⋯2 | x, y−1, z | 8.941 | −4.6 | −1.1 | −14.4 (72) | 5.4 | −14.7 | −18.4 |
C9′–H9′⋯F2
C4⋯C9′ (π⋯π) |
3.300(3)/2.71/114
3.802(2) |
VIII 2⋯2 | x, −y, z + 1/2 | 7.593 | −5.6 | −2.2 | −17.7 (69) | 11.0 | −14.5 | −18.5 |
C10′–H10′⋯C4′ (π)
C11′–H11′⋯C1′ (π) |
3.609(2)/2.78/133
4.008(2)/2.99/157 |
IX 2⋯2 | x, y−1, z | 10.627 | −5.4 | −1.7 | −10.2 (59) | 7.3 | −10.1 | −10.7 |
C14′–H14E⋯F1A′
C8′–H8′⋯F2A′ C8′–H8′⋯F3A′ |
3.541(8)/2.51/160
3.253(11)/2.58/120 3.797(9)/2.74/166 |
X 1⋯2 | −x + 1, −y, −z + 1 | 10.441 | −2.3 | −0.6 | −6.2 (68) | 2.0 | −7.1 | −8.3 |
C10′–H10′⋯F3
C10′–H10′⋯F2 |
3.829(2)/2.86/149
3.800(2)/2.89/142 |
XI 1⋯2 | −x + 1, y, −z + 1/2 | 9.365 | −2.6 | −1.0 | −7.6 (68) | 4.3 | −7.0 | −8.1 |
C4′–H4′⋯F2
C4′–H4′⋯F3 |
3.619(3)/2.66/147
3.306(3)/2.68/117 |
NM03 (P21/c, Z′ = 2) | ||||||||||
I 1⋯2 | x, y, z | 5.173 | −23.0 | −8.0 | −41.3 (57) | 33.0 | −39.3 | −52.0 |
C12–H12⋯O1′
C14–H14B⋯O1′ C6⋯C5′ (π⋯π) C6⋯C6′ (π⋯π) |
3.297(2)/2.26/161
3.448(2)/2.66/129 3.387(1) 3.481(1) |
II 2⋯2 | −x, y−1/2, −z + 1/2 | 6.506 | −17.2 | −7.3 | −46.7 (65) | 36.1 | −35.1 | −42.1 |
C10′–H10′⋯O1′
C5′–H5′⋯Cg2′ (π) C8′–H8′⋯C11′ (π) |
3.340(2)/2.45/139
3.523(2)/2.49/159 3.799(2)/2.80/154 |
III 1⋯1 | −x + 1, −y, −z | 6.565 | −9.7 | −4.4 | −41.5 (75) | 27.9 | −27.6 | −33.4 |
C10–H10⋯Cg1(π)
C9⋯C9 (π⋯π) C9⋯C10 (π⋯π) |
3.834(1)/2.89/146
3.245(1) 3.430(1) |
IV 1⋯2 | x, −y + 1/2, z + 1/2 | 7.758 | −8.3 | −3.7 | −28.6 (70) | 17.0 | −23.6 | −28.6 | C3′–H3′⋯C10 (π) | 3.860(1)/2.79/170 |
V 1⋯2 | −x, −y, −z | 8.970 | −9.9 | −4.7 | −20.4 (58) | 14.7 | −20.3 | −21.8 | C12′–H12′⋯O1 | 3.404(2)/2.33/173 |
VI 1⋯2 | −x, y + 1/2, −z + 1/2 | 8.380 | −7.8 | −2.9 | −16.1 (60) | 10.9 | −15.9 | −18.6 |
C9′–H9′⋯O1
C10′–H10′⋯C3(π) |
3.614(2)/2.69/143
3.605(1)/2.71/139 |
VII 1⋯2 | x, y−1, z | 8.775 | −8.0 | −2.3 | −8.8 (46) | 4.6 | −14.5 | −16.7 |
C3–H3⋯O1′
C2′–H2′⋯F2A |
3.393(2)/2.57/132
3.721(3)/2.69/160 |
VIII 1⋯2 | x, −y−1/2, z−1/2 | 8.192 | −4.5 | −1.4 | −9.3 (61) | 6.0 | −9.2 | −10.7 |
C2–H2⋯F1A′
C3–H3⋯F1A′ |
3.111(3)/2.54/112
3.241(2)/2.81/104 |
IX 1⋯1 | −x + 1, y + 1/2, −z + 1/2 | 8.594 | −2.2 | −0.9 | −8.2 (73) | 3.7 | −7.6 | −10.7 | C5–H5⋯F3A | 3.527(4)/2.46/172 |
X 1⋯1 | −x, −y, −z | 10.564 | −2.6 | −1.6 | −4.1 (49) | 1.0 | −7.3 | −8.8 | C14–H14C⋯O1 | 3.987(2)/2.96/159 |
XI 1⋯1 | x, −y−1/2, z−1/2 | 9.340 | −2.8 | −0.7 | −5.7 (62) | 3.2 | −6.0 | −7.2 |
C9–H9⋯F2A
C8–H8⋯F2A |
3.259(3)/2.60/118
3.386(3)/2.89/109 |
XII 1⋯2 | −x + 1, y + 1/2, −z + 1/2 | 10.943 | −2.8 | −0.4 | −3.8 (54) | 1.4 | −5.6 | −6.8 | C11–H11⋯F2A′ | 3.555(3)/2.64/142 |
NM10 (Pbca, Z′ = 1) | ||||||||||
I | −x + 1, −y, −z + 1 | 5.968 | −16.2 | −6.2 | −34.2 (60) | 20.2 | −36.2 | −41.3 | C11–H11⋯C5 (π) | 3.775(1)/2.74/161 |
II | x−1/2, y, −z + 3/2 | 7.490 | −11.3 | −5.8 | −31.4 (65) | 20.5 | −28.1 | −33.4 |
C14–H14B⋯O1
C8–H8⋯C6 (π) |
3.382(2)/2.59/130
3.951(1)/2.90/164 |
III | −x + 1/2, y−1/2, z | 7.881 | −9.1 | −2.6 | −18.7 (62) | 9.9 | −20.6 | −22.9 |
C9–H9⋯F3A
C10–H10⋯F3A C14–H14C⋯C10 (π) |
3.378(15)/2.69/121
3.409(15)/2.76/119 3.974(2)/3.05/144 |
IV | x−1/2, −y + 1/2, −z + 1 | 6.713 | −4.8 | −1.5 | −16.5 (72) | 5.4 | −17.4 | 23.0 |
C14–H14C⋯F2A
C2–H2⋯F1A C3–H3⋯F1A |
3.670(10)/2.72/146
3.335(11)/2.79/111 3.338(12)/2.79/112 |
V | −x + 1, y−1/2, −z + 3/2 | 8.997 | −7.2 | −3.7 | −10.8 (50) | 10.1 | −11.7 | −11.4 | C5–H5⋯O1 | 3.310(2)/2.42/139 |
VI | −x + 3/2, y−1/2, z | 8.989 | −4.4 | −2.1 | −8.0 (55) | 4.9 | −9.6 | −11.2 | C4–H4⋯O1 | 3.567(2)/2.50/169 |
VII | x + 1, y, z | 9.655 | −0.5 | −1.7 | −11.8 (84) | 7.1 | −6.9 | −10.8 | C3–H3⋯C8 (π) | 3.839(2)/2.83/155 |
NM30 (P21/c, Z′ = 2) | ||||||||||
I 1⋯2 | x, y, z | 7.321 | −11.4 | −5.4 | −31.2 (65) | 22.4 | −25.6 | −32.3 |
C3′–H3′⋯O1
C2′–H2′⋯C1 C13⋯C3 (π⋯π) |
3.403(4)/2.65/127
3.727(3)/2.97/127 3.575(3) |
II 2⋯2 | x, −y + 1/2, z + 1/2 | 8.623 | −8.0 | −4.1 | −17.7 (59) | 11.0 | −18.8 | −19.6 | C8′–H8′⋯O1′ | 3.359(3)/2.53/133 |
III 1⋯1 | x, −y + 3/2, z + 1/2 | 8.686 | −8.4 | −3.9 | −17.0 (58) | 11.0 | −18.3 | −19.6 | C12–H12⋯O1 | 3.352(4)/2.49/136 |
IV 2⋯2 | x, −y + 3/2, z−1/2 | 7.524 | −5.2 | −2.0 | −23.9 (77) | 12.8 | −18.3 | −21.8 |
C12′–H12′⋯F1′
C4′⋯C9′ (π⋯π) C5′⋯C9′ (π⋯π) |
3.385(3)/2.63/126
3.547(3) 3.408(3) |
V 1⋯1 | x, −y + 1/2, z−1/2 | 7.482 | −5.8 | −2.3 | −25.0 (76) | 14.9 | −18.2 | −17.2 |
C8–H8⋯F2
C3⋯C11 (π⋯π) C4⋯C11 (π⋯π) |
3.379(4)/2.62/127
3.346(3) 3.528(3) |
VI 1⋯2 | x, −y + 3/2, z + 1/2 | 8.400 | −4.6 | −3.4 | −22.2 (74) | 13.2 | −17.0 | −21.1 |
C4′–H4′⋯C6 (π)
C4′⋯C13 |
3.758(3)/2.83/144
3.685(3) |
VII 2⋯2 | −x, −y + 1, −z + 1 | 7.998 | −6.1 | −1.6 | −18.3 (70) | 8.9 | −17.0 | −22.1 | C15′–F2′⋯C9′ (π) | 3.713(3)/3.155(2)/104(1) |
VIII 1⋯1 | −x + 1, −y + 1, −z + 2 | 8.078 | −5.9 | −1.4 | −18.2 (71) | 9.2 | −16.4 | −21.3 | C15–F3⋯C11 (π) | 3.693(3)/3.161(2)/102 |
IX 2⋯2 | −x, −y + 1/2, −z + ½ | 6.529 | −3.6 | −1.8 | −19.0 (78) | 8.4 | −16.0 | −19.8 |
C12′–H12′⋯F2′
C15′–F2′⋯C13′ |
3.338(3)/2.52/132
4.517(3)/3.203(2)/166(1) |
X 1⋯1 | −x + 1, −y + 1/2, −z + 3/2 | 6.520 | −3.4 | −1.8 | −18.1 (78) | 7.8 | −15.5 | −19.3 |
C8–H8⋯F3
C15–F3⋯C13 |
3.330(3)/2.54/129
4.473(3)/3.154(2)/166(1) |
XI 1⋯1 | x, y + 1, z | 8.339 | −6.0 | −2.1 | −11.7 (59) | 4.9 | −14.9 | −17.3 |
C4–H4⋯O1
C14–H14B⋯F1 |
3.547(4)/2.73/132
3.637(3)/2.68/147 |
XII 2⋯2 | x, y−1, z | 8.339 | −6.2 | −2.5 | −12.3 (59) | 6.4 | −14.6 | −17.2 |
C4′–H4′⋯O1′
C14′–H14E′⋯F3′ |
3.515(4)/2.66/135
3.495(4)/2.59/141 |
XIII 1⋯2 | x, −y + 1/2, z + 1/2 | 8.349 | −4.4 | −3.1 | −13.0 (63) | 7.9 | −12.6 | −13.8 |
C5–H5⋯C6′ (π)
C5′–H5′⋯O1′ |
3.722(3)/2.73/152
3.499(5)/2.91/114 |
XIV 2⋯2 | −x, −y + 2, −z + 1 | 10.740 | 1.6 | −0.3 | −5.2 (95) | 2.1 | −1.8 | −2.5 |
C15′–F2′⋯F3′–C15′
C15′–F3′⋯F3′–C15′ |
3.104(2)/90(1)/128(1)
3.002(2)/94(1)/94(1) |
XV 1⋯1 | −x + 1, −y, −z + 2 | 10.759 | 1.6 | −0.3 | −5.1 (94) | 1.9 | −1.8 | −2.6 | C15–F1⋯F1–C15 | 2.966(2)/94(1)/94(1) |
NM11 (P21/c, Z′ = 1) | ||||||||||
I | −x + 1, −y, −z + 2 | 7.697 | −27.0 | −7.9 | −29.4 (46) | 23.4 | −40.8 | −43.4 |
C9–H9⋯O1
C10–H10⋯F6 |
3.498(2)/2.46/160
3.296(2)/2.49/144 |
II | x−1, y, z | 8.980 | −7.7 | −2.6 | −29.4 (74) | 17.6 | −22.0 | −31.3 |
C10⋯C3 (π⋯π)
C11⋯C4 (π⋯π) |
3.560(2)
3.579(2) |
III | −x + 2, −y + 1, −z + 2 | 8.424 | 0.1 | −1.6 | −24.9 (94) | 8.6 | −17.8 | −23.3 |
C2⋯C3 (π⋯π)
C16⋯C4 (π⋯π) |
3.960(2)
3.955(2) |
IV | x, −y + 1/2, z−1/2 | 7.409 | −4.6 | −1.5 | −17.4 (74) | 6.7 | −16.7 | −21.0 |
C5–H5⋯F6
C6–H6⋯F4 |
3.543(2)/2.79/127
3.773(2)/2.82/148 |
V | −x + 2, y + 1/2, −z + 3/2 | 8.484 | −11.8 | −3.9 | −10.7 (41) | 9.9 | −16.6 | −18.2 |
C5–H5⋯O1
C4–H4⋯F3 |
3.287(2)/2.35/144
3.645(2)/2.65/154 |
VI | −x + 1, y + 1/2, −z + 3/2 | 7.347 | 0.6 | −2.5 | −23.7 (93) | 9.8 | −15.8 | −21.0 |
C14–H14A⋯F1
C14–H14A⋯F3 C10–H10⋯C5 (π) |
3.305(2)/2.84/106
3.731(2)/2.87/137 3.871(2)/3.11/128 |
VII | x−1, −y + 1/2, z−1/2 | 11.364 | −2.3 | −0.5 | −6.3 (69) | 3.8 | −5.3 | −7.5 |
C11–H11⋯F5
C3–H3⋯F1 |
3.600(2)/2.58/156
3.727(2)/2.78/147 |
NM12 (P21/c, Z′ = 1) | ||||||||||
I | −x + 2, −y + 2, −z | 5.674 | −6.7 | −3.9 | −41.4 (80) | 15.7 | −36.2 | −45.0 |
C10–H10⋯C3 (π)
C9–H9⋯C5 (π) C9⋯C9 (π⋯π) C15–F1⋯F4A–C16 |
3.821(2)/3.02/131
4.077(1)/3.04/160 3.624(2) 3.074(3)/140(1)/112(1) |
II | x, −y + 3/2, z−1/2 | 7.061 | −12.9 | −7.1 | −21.8 (52) | 16.2 | −25.6 | −31.2 |
C12–H12⋯O1
C6–H6⋯O1 |
3.356(3)/2.32/160
3.562(3)/2.57/153 |
III | x, y, z−1 | 7.945 | −8.9 | −2.5 | −16.5 (59) | 5.7 | −22.3 | −25.9 |
C11–H11⋯O1
C10–H10⋯F2 |
3.646(3)/2.66/152
3.446(3)/2.69/127 |
IV | x−1, y, z | 9.098 | −4.0 | −1.6 | −17.5 (76) | 7.3 | −15.8 | −20.7 |
C14–H14B⋯C3 (π)
C3–H3⋯F1 |
4.000(2)/2.96/162
3.751(3)/2.78/149 |
V | −x + 2, −y + 2, −z + 1 | 7.883 | −3.1 | −0.9 | −12.1 (75) | 4.1 | −12.1 | −16.0 | C2–H2⋯F1 | 3.427(3)/2.63/130 |
VI | x−1, y, z−1 | 10.768 | 0.2 | −0.4 | −4.9 (96) | 1.3 | −3.8 | −6.1 |
C14–H14A⋯F5A
C15–F3⋯F4A–C16 |
3.814(9)/2.85/149
3.061(8)/166(2)/156(2) |
NM22 (P21/c, Z′ = 1) | ||||||||||
I | x, −y + 1/2, z + 1/2 | 7.291 | −24.7 | −10.9 | −32.9 (48) | 31.5 | −37.0 | −40.5 |
C2–H2⋯O1
C8–H8⋯O1 C6–H6⋯O1 |
3.500(2)/2.43/173
3.118(2)/2.21/140 3.679(3)/2.69/152 |
II | −x + 1, −y + 1, −z | 5.937 | −2.9 | −4.7 | −42.8 (85) | 24.3 | −26.0 | −33.4 |
C10–H10⋯C5 (π)
C10⋯C10 (π⋯π) |
3.837(2)/2.79/163
3.500(1) |
III | x−1, y, z | 8.376 | −10.2 | −4.6 | −30.0 (67) | 20.6 | −24.2 | −30.3 |
C4–H4⋯Cg2 (π)
C5–H5⋯F2A |
3.475(1)/2.51/148
3.583(14)/2.67/142 |
IV | x, y, z + 1 | 7.976 | −6.2 | −2.6 | −17.9 (67) | 11.2 | −15.6 | −18.1 |
C12–H12⋯F1A
C6–H6⋯F6 |
3.145(15)/2.25/139
3.352(2)/2.58/128 |
V | −x + 1, −y + 1, −z + 1 | 8.023 | −3.1 | −0.8 | −7.7 (66) | 1.4 | −10.2 | −14.6 |
C11–H11⋯F5
C11–H11⋯F6 |
3.815(2)/2.91/142
3.882(2)/2.99/140 |
NM23 (P21/c, Z′ = 1) | ||||||||||
I | −x + 1, −y + 1, −z | 5.065 | −15.0 | −9.3 | −58.3 (71) | 43.4 | −39.1 | −50.8 |
C10–H10⋯Cg1 (π)
C10⋯C11 (π⋯π) |
3.652(2)/2.61/161
3.331(2) |
II | −x + 1, −y + 1, −z + 1 | 7.982 | −18.4 | −8.1 | −37.1 (58) | 25.0 | −38.7 | −42.4 |
C12–H12⋯O1
C2–H2⋯O1 |
3.652(2)/2.58/172
3.552(2)/2.80/126 |
III | x, −y + 1/2, z−1/2 | 6.205 | −14.6 | −5.6 | −27.6 (58) | 16.3 | −31.4 | −38.7 |
C5–H5⋯O1
C2–H6⋯O1 |
3.314(2)/2.62/121
3.302(2)/2.60/122 |
IV | −x + 1, y + 1/2, −z + 1/2 | 7.260 | −4.6 | −2.3 | −18.6 (73) | 11.3 | −14.2 | −19.0 |
C14–C14C⋯F5A
C5⋯C12 (π⋯π) |
3.636(2)/2.62/157
3.457(2) |
V | x−1, −y + 1/2, z−1/2 | 10.749 | −2.0 | −0.7 | −8.4 (76) | 3.1 | −8.0 | −10.6 |
C8–C8⋯F4A
C15–F3A⋯F6A–C16 |
3.700(3)/2.64/166
2.948(2)/148(1)/96(1) |
VI | x + 1, y, z + 1 | 11.682 | −2.1 | −0.6 | −6.7 (71) | 3.9 | −5.5 | −6.6 |
C3–H3⋯F1A
C15–F3A⋯F4A–C16 |
3.550(2)/2.48/173
3.004(2)/96(1)/145(1) |
NM31 (P21/c, Z′ = 1) | ||||||||||
I | −x + 1, y−1/2, −z + 1/2 | 7.187 | −11.9 | −4.9 | −32.8 (66) | 19.5 | −30.1 | −36.8 |
C4–H4⋯O1
C4⋯C1 (π⋯π) C3⋯C6 (π⋯π) |
3.410(2)/2.42/151
3.665(2) 3.656(2) |
II | x, y−1, z | 7.940 | −12.5 | −3.6 | −17.2 (52) | 11.3 | −22.1 | −26.0 |
C9–H9⋯O1
C6–H6⋯F3A C12–H12⋯F1A C14–H14A⋯F1A |
3.508(2)/2.54/149
3.229(7)/2.38/135 3.699(6)/2.72/150 3.656(7)/2.74/143 |
III | −x, −y, −z + 1 | 9.001 | −5.5 | −1.5 | −18.7 (73) | 6.2 | −19.6 | −24.9 |
C11⋯C11 (π⋯π)
C14–H14B⋯F2A |
3.595(2)
3.600(6)/2.90/123 |
IV | x, −y + 1/2, z + −1/2 | 8.143 | −5.5 | −3.3 | −20.1 (70) | 10.8 | −18.2 | −19.5 |
C11–H11⋯O1
C5–H5⋯F6 C6–H6⋯F6 |
3.692(2)/2.76/145
3.244(2)/2.52/123 3.280(2)/2.61/120 |
V | −x, y + 1/2, −z + 1/2 | 7.937 | −6.5 | −2.1 | −15.2 (64) | 9.6 | −14.2 | −19.4 | C14–H14C⋯Cg2 (π) | 3.939(2)/3.05/139 |
VI | −x + 1, −y, −z + 1 | 8.313 | −0.7 | −0.8 | −9.6 (86) | 1.9 | −9.2 | −13.8 | C4–H4⋯F2A | 3.614(5)/2.80/133 |
VII | x, −y−1/2, z− + 1/2 | 9.458 | −0.0 | −0.3 | −6.3 (95) | 1.7 | −4.9 | −7.6 | C15–F3A⋯F6–C16 | 2.918(2)/134(1)/111(1) |
NM33 (P![]() |
||||||||||
I 1⋯1 | −x + 1, −y + 1, −z | 7.358 | −17.3 | −8.1 | −38.8 (60) | 26.4 | −37.8 | −40.8 | C8–H8⋯O1 | 3.562(1)/2.49/173 |
II 1⋯2 | −x + 1, −y + 1, −z | 4.361 | −10.6 | −8.0 | −57.2 (75) | 40.6 | −35.3 | −49.8 |
C3′–H3′⋯Cg1 (π)
C9–H9⋯C8′ (π) C8⋯C3′ (π⋯π) C9⋯C3′ (π⋯π) |
3.664(2)/2.63/159
3.648(1)/2.95/122 3.486(2) 3.311(2) |
III 2⋯2 | −x + 1, −y + 1, −z + 1 | 6.426 | −12.7 | −3.8 | −32.5 (66) | 16.0 | −33.0 | −37.1 |
C6′–H6′⋯F2A′
C6′–H6′⋯F1A′ C5′–H5′⋯F1A′ C11′⋯C11′ (π⋯π) |
3.772(10)/2.72/166
3.475(7)/2.72/127 3.544(8)/2.88/120 3.547(2) |
IV 1⋯2 | x, y, z | 8.192 | −21.1 | −6.9 | −19.4 (41) | 19.2 | −28.2 | −29.3 |
C8′–H8′⋯O1
C2′–H2′⋯O1 |
3.370(2)/2.30/169
3.285(2)/2.42/136 |
V 1⋯2 | −x, −y + 1, −z | 8.726 | −8.3 | −4.7 | −26.4 (67) | 17.6 | −21.9 | −28.2 |
C14–H14C⋯O1′
C14–H14B⋯C2′(π) C11⋯C5′ (π⋯π) |
3.636(2)/2.80/134
3.502(2)/2.63/138 3.674(2) |
VI 1⋯1 | −x + 1, −y, −z | 7.963 | −5.6 | −2.4 | −28.8 (78) | 17.4 | −19.4 | −29.7 |
C4⋯C5 (π⋯π)
C16⋯C6 (π⋯π) |
3.541(1)
3.615(1) |
VII 1⋯2 | x + 1, y, z | 10.529 | −14.9 | −5.0 | −10.5 (35) | 15.5 | −15.0 | −14.6 |
C3–H3⋯O1′
C14′–H14F⋯F5 |
3.167(1)/2.20/148
3.542(2)/2.81/125 |
VIII 2⋯2 | x−1, y, z | 8.998 | −6.3 | −1.1 | −10.3 (58) | 3.8 | −14.0 | −17.7 |
C14′–H14D⋯F3A′
C15′–F3A′⋯C13′ |
3.275(11)/2.75/110
3.179(10)/177 |
IX 1⋯1 | x−1, y, z | 8.998 | −3.1 | −1.5 | −11.6 (72) | 6.1 | −10.0 | −13.1 |
C12–H12⋯F6
C14–H14B⋯F6 |
3.397(2)/2.43/148
3.311(2)/2.77/111 |
X 1⋯1 | −x, −y, −z−1 | 11.332 | −4.0 | −0.7 | −8.4 (64) | 3.2 | −10.0 | −11.5 |
C11–H11⋯F6
C15–F2⋯F3–C15 |
3.762(1)/2.78/151
3.009(1)/130(1)/99(1) |
XI 1⋯2 | −x + 1, −y, −z | 8.377 | −4.4 | −1.5 | −11.9 (67) | 7.9 | −10.0 | −13.8 |
C14′–H14F⋯F6
C14′–H14F⋯F4 |
3.509(2)/2.48/160
3.654(2)/2.76/140 |
XII 1⋯2 | x, y, z−1 | 10.301 | −3.8 | −1.1 | −7.9 (62) | 4.9 | −8.0 | −9.5 |
C11′–H11′⋯F1
C12′–H12′⋯F1 C12′–H12′⋯F2 |
3.210(2)/2.54/119
3.262(2)/2.66/115 3.899(1)/2.90/153 |
XIII 2⋯2 | −x + 1, −y + 2, −z + 1 | 9.320 | −2.9 | −0.4 | −5.6 (63) | 1.8 | −7.2 | −10.7 | C5′–H5′⋯F5A′ | 3.682(7)/2.78/141 |
XIV 1⋯1 | −x + 2, −y, −z | 13.180 | 1.1 | −0.2 | −4.7 (96) | 2.7 | −1.2 | −1.5 |
C16–F5⋯F6–C16
C16–F5⋯F5–C16 |
3.012(1)/139(1)/95(1)
2.889(1)/101(1)/101(1) |
Hence, % electrostatic contribution (coulombic + polarization), %Eelec = 100 − %Edisp
These values are reported in Table 5.
The PIXEL interaction energy was further compared with the interaction energies obtained from the theoretical calculations at the DFT + Disp/B97D60–62 level at a higher aug-cc-pVTZ basis set using TURBOMOLE.63 The hydrogen atoms were moved to neutron values (1.083 Å for C–H) before the calculations. The basis set superposition error (BSSE) for the interaction energies was corrected using the counterpoise method.64 The final interaction energies are listed along with the PIXEL interaction energies in Table 5.
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Fig. 1 (a) and (b) ORTEP of NM10 and NM11 drawn with 50% ellipsoidal probability with an atom numbering scheme displaying two possible conformations in this class of compounds. A similar numbering scheme was followed in all the structures. Only the major component of the disordered part of the molecule is shown for clarity. The dotted lines indicates the presence of an intramolecular C(sp3)–H⋯O![]() ![]() |
From the lattice energy calculations, using the PIXEL method for all the molecules (Table 4), it was observed that the values lie between 102 kJ mol−1 and 115 kJ mol−1, with the dispersion energy being the major component. The lattice energy of the four related molecules in CSD was also calculated using the PIXEL method (Table 4). The result demonstrated that the substitution of the methyl group on N-methyl-N-phenyl benzamide did not exhibit significant changes in the lattice energy.
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Fig. 2 (a) Selected molecular pairs along with their PIXEL interaction energy in NM00. Roman numbers in red indicate the molecular pairs (in Table 5). (b) Packing of molecules via the utilization of weak C–H⋯O![]() ![]() |
Furthermore, the analysis of the molecular pairs extracted [Fig. 3(a)] from the crystal packing of NM02 revealed that among the top six most stabilized motifs, five consists (motifs I, III–VI) of the presence of weak C–H⋯OC hydrogen bonds with stabilization energies ranging from 17.6 kJ mol−1 to 35.1 kJ mol−1 with substantial electrostatic contributions (in the range of 31 to 45%, Table 5). The highest stabilized (with a 43% electrostatic contribution) molecular motif was I, which included the presence of dimeric bifurcated weak C–H⋯O
C hydrogen bonds with donor atoms from two different C–H bonds [C(sp2)–H and C(sp3)–H] in different electronic environments. Motifs II, III and IV were observed to provide similar stabilization (I.E: −31.5, −31.1 and −30.0 kJ mol−1, respectively) but differed in the nature of the participating interactions. In the case of motif II, the molecules interact via the existence of C–H⋯π hydrogen bonds and π⋯π interactions, with the % contribution from the dispersion being the highest (77%) among all the motifs. Motif III involved one short C(sp2)–H⋯O
C (2.46 Å/144°) and two C(sp2)–H⋯F–C(sp3) hydrogen bonds (2.43 Å/138°; 2.65 Å/126°); the former being significantly short. The dispersion contribution was 59% with this being a significant contribution and comparable to related weak H-bonds. Furthermore, motif IV, which involved one C(sp2)–H⋯O
C and a short C–H⋯π hydrogen bond (2.65 Å/157°, Table 5), showed a dispersion contribution (69%) in between that of motifs II and III. Two bifurcated C(sp2)–H⋯O
C along with C(sp3)–H⋯F–C(sp3) were observed to hold the molecules in motif VI (I.E = −18.2 kJ mol−1) with the highest (45%) electrostatic contribution among all the motifs. Furthermore, in the case of motif VII (I.E = −14.7 kJ mol−1) and VIII (I.E = −14.5 kJ mol−1), wherein C–H⋯π hydrogen bonds and π⋯π interactions are present, the total stabilization was dominated from the contribution due to the dispersion interactions (72 and 69%, respectively). It is to be noted that the crystal packing in NM02 was also stabilized, albeit less, by the presence of weak C(sp2/sp3)–H⋯F–C(sp3) hydrogen bonds (motifs IX–XI). Motif IX (I.E = −10.1 kJ mol−1) showed the presence of one bifurcated C(sp2)–H⋯F–C(sp3) and a short and directional C(sp3)–H⋯F–C(sp3) (2.51 Å/160°) hydrogen bond with the electrostatic contribution being 41% of the total stabilization. Motifs X and XI [involving bifurcated C(sp2)–H⋯F–C(sp3) hydrogen bonds], which were observed to contribute similar stabilization (−7.1 and −7.0 kJ mol−1) towards the crystal packing, contain a 32% contribution from electrostatics. The stabilization energy for a C–H⋯F hydrogen bond was reported to be −0.40 kcal mol−1 (−1.6 kJ mol−1) by an ab initio theoretical calculation in the molecular crystal.69 It was observed in the same study that the stabilization energy for a C–H⋯F hydrogen bond was mainly dominated by electrostatic and dispersion components with the latter being more prominent. Fig. 3(b) and (c) display the packing of molecules in NM02 with the utilization of such weak interactions.
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Fig. 4 (a) Selected molecular pairs, along with their PIXEL interaction energy in NM03. C atoms are in purple and represent the second molecule in the asymmetric unit. (b) Packing of molecules down the (101) plane in NM03, displaying the presence of weak C–H⋯O![]() |
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Fig. 9 (a) Selected molecular pairs extracted from the crystal packing in NM22. (b) Network of weak C(sp2)–H⋯O![]() |
It can be noted that weakly stabilized molecular motifs possessing interactions involving organic fluorine were recognized in the crystal packing of NM33, with stabilization energies in the range from 10 kJ mol−1 to 1.2 kJ mol−1 [motif IX–XIV, Fig. 12(a)]. Motifs IX, X and XI were observed to provide similar stabilization (−10 kJ mol−1) but involve interactions of a different nature and geometry. Motif IX was found to involve bifurcated C(sp2)/(sp3)–H⋯F hydrogen bonds (with one at a short distance of 2.43 Å, 148°), whereas a dimeric C(sp2)–H⋯F bond and C(sp3)–F⋯F–C(sp3) bond were observed in motif X. Furthermore, in the case of motif XI, bifurcated C(sp3)–H⋯F hydrogen bonds (with one being short and directional; 2.48 Å, 160°) was recognized. Unlike motif IX, it involves a bifurcated acceptor, wherein two fluorine atoms of one CF3 group are involved in the formation of the hydrogen bond with a hydrogen atom of the CH3 group. Moreover, motifs XII and XIII were observed to consist of weak C(sp2)–H⋯F–C(sp3) hydrogen bonds, providing similar stabilization (8.0 and 7.2 kJ mol−1, respectively). A dimeric C(sp3)–F⋯F–C(sp3) interaction (with one contact, Type I geometry: 2.889(1) Å/101(1)°/101(1)°) was recognized in the formation of the molecular motif XIV [Fig. 11(a)], which provided the least stabilization (I.E = −1.2 kJ mol−1) to the crystal packing. The partition of the interaction energy into different contributions indicated a positive coulombic contribution, with the net stabilization originating mainly from the dispersive contribution (96%, Table 5).
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Fig. 13 Relationship of all the crystal structures from the XPac analysis (Section S2, ESI†). The compounds NM02, NM03, NM30 and NM33 have two symmetry independent molecules, represented by the number in the circle. |
It was of further interest to compare all the present crystal structures with related crystal structures reported in CSD [Fig. 1(d)]. Comparisons with structures with a cis-geometry (CSD ref. code: YEGJEY, YEGKEA, YEGKIE, YEGKOK and YEGLAX) revealed no similarity with the unsubstituted compound, NM00 (ref. code: JAZJOJ10) [Table S2, ESI†]. There was also the presence of a similar molecular chain (1D SCs) on comparison of NM03_1, NM10, NM12 with YEGLAX [Fig. S10(a) and Table S2, ESI†], which is analogous with the chain ‘B2’ [in pair NM03_1/NM10; Fig. S8(b), ESI†]. In addition, the existence of 1D SC (similar chain) was also recognized for NM22/YEGLAX. Moreover, the pairs NM03_1/YEGKEA, NM10/YEGKEA, NM10/YEGKOK, NM12/YEGKEA and NM23/YEGKEA display the presence of a similar molecular robust dimer (equivalent with the dimer ‘A1’; 0D SCs) in their crystal packing [Fig. S11(a), ESI†]. Furthermore, the presence of 0D SCs (similar molecular pairs) was also observed for the pairs NM02_1/YEGKOK, NM02_1/YEGLAX NM22/YEGKOK, NM31/YEGLAX and NM22/YEGKOK [Fig. S11(b)–(d), ESI†]. Furthermore, the comparison of the crystal structure of NM11 with the structure reported in CSD with the trans geometry (ref. code: YEGJEY, DIBGIF and DIBGAX) indicates the presence of similar chains in the case of the pairs, NM11/DIBGAX_1 and NM11/DIBGAX_4, and surprisingly, no similarity was observed for NM11/YEGJEY (having four methyl substitution at ortho positions of both the phenyl rings in the molecule). Hence, from the overall comparison of the crystal structures, it can be observed that although none of these structures are isostructural, the presence of similar structural motifs can be realized in their crystal packing.
The computational procedures, which involve calculation of the lattice energy and the evaluation of the interaction energies for different intermolecular interactions, provided detailed insights into the nature of the weak intermolecular interactions present in the crystal packing of this series of compounds. In the absence of a strong donor, the crystal packing was observed to be stabilized by the cooperative interplay in the presence of weak intermolecular interactions, such as C–H⋯OC and C–H⋯π hydrogen bonds, along with other weak interactions such as π⋯π stacking. There are short C–H⋯O
C hydrogen bonds observed in the crystal packing of these compounds with a substantially high electrostatic (coulombic + polarization) contribution. The interactions involving organic fluorine, namely, C–H⋯F–C, C–F⋯F–C, and C–F⋯F–C, are ubiquitous and provide stabilization, albeit less, to the crystal packing, and are observed to be involved in the formation of different unique structural motifs. The detailed and comparative analysis of the nature of the different interactions involved in the different molecular motifs in the crystal packing with detailed inputs from energy calculations using the PIXEL method brings out the following observations: (i) the interaction energy in the decreasing order of weak hydrogen bonds was as follow: C–H⋯O
C > C–H⋯π > C–H⋯F–C (ii) the contribution from dispersion energy towards the total stabilization follows the order: C–H⋯O
C < C–H⋯F–C < C–H⋯π (the contribution from the electrostatic follows the opposite order). (iii) There is an increase in the electrostatic contribution observed at short distances, and directional hydrogen bonds are present in the molecular motif. In future studies, it would be of interest to extend this study to the investigation of interactions involving organic fluorine in different electronic and chemical environments.
Footnote |
† Electronic supplementary information (ESI) available. CCDC 1025677–1025685 and 1027431. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c5nj01670c |
This journal is © The Royal Society of Chemistry and the Centre National de la Recherche Scientifique 2015 |