Open Access Article
Piotr A.
Guńka
*a,
Karol
Kraszewski
a,
Yu-Sheng
Chen
b and
Janusz
Zachara
a
aWarsaw University of Technology, Faculty of Chemistry, Noakowskiego 3, 00-664 Warszawa, Poland. E-mail: piogun@ch.pw.edu.pl
bUniversity of Chicago, ChemMatCARS beamline, Advanced Photon Source, Argonne, Illinois 60439, USA
First published on 25th June 2014
Unprecedented intercalates of arsenic(III) oxide with potassium azide and ammonium azide have been obtained and characterized by single crystal X-ray diffraction. The compounds are built of As2O3 sheets separated by charged layers of cations and azide anions perpendicular to the sheets. The intercalates are an interesting example of hybrid materials whose structure is governed by covalent bonds in two directions and ionic bond in the third one. The obtained compounds are the first examples of As2O3 intercalates containing linear pseudohalogen anions. Periodic DFT calculations of interlayer interaction energies were carried out with the B3LYP-D* functional. The layers are held together mainly by ionic bonds, although the computations indicate that interactions between cations and As2O3 sheets also play a significant role. A comparison of cation and anion interaction energies with neutral As2O3 sheets sheds light on the crystallisation process, indicating the templating effect of potassium and ammonium cations. It consist in the formation of sandwich complexes of cations with crown-ether-resembling As6O12 rings. Raman spectra of both compounds are recorded and computed ab initio and all vibrational bands are assigned.
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1, v/v) twice. The powder was dried on filter paper. Such a procedure leads to a pure intercalate 2 with a yield of 65%. In order to grow a single crystal suitable for the X-ray diffraction experiment, the solution was diluted five times before the addition of HNO3. Nonetheless, all attempts led to tiny, plate-shaped single crystals whose diffraction pattern was only measurable using the synchrotron X-ray source.
Suitable single crystals were selected under a polarizing microscope, mounted in inert oil and transferred to the cold gas stream of the diffractometer. Diffraction data for compound 1 were measured at RT with graphite-monochromated Mo-Kα radiation on the Oxford Diffraction κ-CCD Gemini A Ultra diffractometer. Absorption effects were corrected analytically.14 Cell refinement and data collection as well as data reduction and analysis were performed with the Oxford Diffraction software CrysAlisPRO.15 Diffraction data for compound 2 were collected at ChemMatCARS beamline, 15-ID-B, at the Advanced Photon Source (APS), USA. A Bruker APEXII CCD detector was used to record the diffracted intensities at λ = 0.38745 Å (32 keV) and at the following temperatures: 45(2), 35(2), 25(2), 15(2) and 30(2) K. Data reduction and analysis including multi-scan absorption and oblique corrections were carried out using the APEX-II suite and SADABS.16 The structures were solved by direct methods and subsequent Fourier-difference synthesis and refined by full-matrix least-squares against F2 with SHELX-201317 within the Olex2 suite which was also used for data analysis.18 Ammonium cations in compound 1 lie on a special position exhibiting 6/mmm site symmetry and hydrogen atoms are disordered. Figures of crystal structures were created using Diamond19 and rendered with POV-Ray.20 All of the discussions on the crystal structure of compound 2 relate to the 45 K measurement, if not stated otherwise.‡
Raman spectra were recorded using a Nicolet Almega Dispersive Raman spectrometer. Spectra of powders of 1 and 2 were obtained using a 780 nm excitation line and a 1200 lines mm−1 resolution grating. The exposition time was 30 s.
Periodic quantum mechanical computations were carried out using the CRYSTAL09 programme suite.21–23 Calculations were performed within the DFT24,25 framework using the hybrid B3LYP functional26 with an all-electron TZVP basis set optimised for solid state computations (pob-TZVP).27 Dispersion interactions were accounted for by an empirical correction scheme proposed by Grimme28 with a modified parameterisation developed by Civalleri et al. (B3LYP-D* model).29 The five tolerances setting the accuracy of the Coulomb and exchange series were arbitrarily set to 7, 7, 7, 7, and 25 and SCF convergence on the total energy was set to 10−7 and 10−10 hartree for geometry optimisation and for frequency calculations, respectively. The shrinking factor in the reciprocal net was set to 8, an extra-large grid was used for charge integration (XLGRID keyword) and a modified Broyden scheme,30 following the method proposed by Johnson,31 was used to speed up the SCF convergence. Vibrations were visualized and analysed using J-ICE.32
Due to the separation of ions having opposite charge by neutral As2O3 sheets, the interionic K⋯Nmiddle and N⋯Nmiddle distances of 4.7433(9) and 4.8393(3) Å are much longer than in the KN3 and NH4N3 ionic crystals (3.5372(3) and 3.740(2), respectively).37,38 There are quite large voids in the crystal structures, located in ionic layers. The packing indices for compounds 1 and 2 equal 80.9% and 88.1%, respectively.
When carrying out diffraction experiments at the APS synchrotron, we noted that the crystals of the intercalate 2 broke upon flash-cooling to 15 K which was manifested by the presence of split reflections in their diffraction patterns. Nevertheless, the intercalate crystals remained intact when cryo-cooled to 45 K. Suspecting a polymorphic transition, we decided to undertake a multi-temperature study of the intercalate's crystal structure. We recorded the diffraction patterns of one crystal at the following temperatures in the given order: 45, 35, 25, 15 and 30 K. Reflections recorded at 45 K were not split and cooling the crystal by 10 °C did not cause any division of reflections. We did not observe any polymorphic transition either. However, the unit cell was expanding as a function of irradiation time (equivalent to the X-ray dose) and the increase of displacement parameters for terminal nitrogen atoms of azide anions was much more pronounced than for all the other atoms (Fig. S2 and Table S1 in the ESI†). Expansion of the unit cell and an increase of Biso value with accumulating X-ray dose are commonly observed symptoms of radiation damage in protein crystallography.39 This suggests that the studied crystal was subject to radiation damage which proceeded mainly via decomposition of azide anions, probably accompanied by nitrogen evolution.
There are several possible options of extracting electrically neutral layers from the studied intercalates (Fig. 2). The choices may be divided into three groups: layers terminated with an ion on one side only, denoted a and b, layers terminated with ions on both sides, denoted c and d, and purely arsenic(III) oxide layers. The a and b choices of layers as well as the c and d choices are related by the inversion centre. They are unique in the axial P31m space group utilised for compound 1 computations and equivalent by symmetry in the centrosymmetric P6/mmm space group of compound 2 which reduces the number of possible extractions by two. There are four pairs of interlayer interactions present in the investigated structures – the interactions between cations (C) and As2O3 neutral layers (L) with the interaction energies denoted ECL and ELC (the order of letters is consistent with the −Z direction); the interactions of anions (A) with As2O3 layers: EAL and ELA; ionic interactions ECA and EAC; and the interactions between neutral As2O3 sheets, which we will refer to as ELL_As when layers are chosen such that arsenic atoms from adjacent sheets point towards one another and ELL_O otherwise. To compute the interaction energies, we note that unit cell energy can be decomposed into the following terms when layers are extracted according to choices c and d:
| ε0 = εCLA_c + εL_c + EAC + ELL_O + ELL_As + EAL + ELC | (1a) |
| ε0 = εALC_d + εL_d + ECA + ELL_O + ELL_As + ELA + ECL | (1b) |
| ε0 = εLALC_a + ECL + ECA + ELL_O | (2a) |
| ε0 = εLCLA_a + EAL + EAC + ELL_As | (2b) |
| ε0 = εCLAL_b + ELC + EAC + ELL_O | (2c) |
| ε0 = εALCL_b + ELA + ECA + ELL_As | (2d) |
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| Fig. 2 Possible layer extraction choices and interlayer interaction energies in crystal structures of intercalates 1 and 2. | ||
In order to estimate the ELL_O and ELL_As we extract only the As2O3 sheets from intercalate structures and we notice that:
| εLL_O = εL_c + εL_d + ELL_O | (3a) |
| εLL_As = εL_c + εL_d + ELL_As | (3b) |
Note that the following pairs of equations are equivalent by symmetry for compound 2: (1a) and (1b), (2a) and (2c) as well as (2b) and (2d). The solution of the system of linear equations is straightforward and is given in Table S2 in the ESI.† Obtained interaction energy values are presented in Table 1. The optimised structures of compounds 1 and 2 as well as εI_i values are given in Tables S3 and S4.† The BSSE error was estimated using the BB-CP method, which in practice consist in adding ghost atoms to the extracted layers where additional basis functions are centered.42 As can be seen from Table 1, the BSSE error is huge for anion⋯layer interactions and substantial for cation⋯layer contacts. This observation agrees well with the conclusion of Brandenburg and co-workers presented in a recent publication where a geometric method of BSSE correction has been extended to periodic DFT calculations.43 It was shown there that BSSE can be enormous for the pob-TZVP basis set.
| Compound | Interlayer interaction | E | E C | E ion | |
|---|---|---|---|---|---|
| a Both ions were treated as monopoles. b Cations were treated as monopoles and azide anions as two −0.5 partial point charges located on terminal nitrogen atoms. | |||||
| 1 | NH4N3·2As2O3 | CA | −237.5 | −233.4 | −281.1a |
| P31m | AC | −237.4 | −234.6 | −272.3b | |
| LL_O | −24.9 | −24.8 | |||
| LL_As | −14.0 | −15.5 | |||
| CL | −55.0 | −41.7 | |||
| LC | −37.3 | −26.1 | |||
| AL | −30.6 | −10.7 | |||
| LA | −30.3 | −11.4 | |||
| 2 | KN3·2As2O3 | CA | −240.1 | −234.9 | −289.3a |
| P6/mmm | LL_O | −24.9 | −25.1 | −273.0b | |
| LL_As | −14.1 | −18.3 | |||
| CL | −68.6 | −51.7 | |||
| AL | −32.4 | −12.1 | |||
As expected the ECA and EAC electrostatic energies for both compounds are much larger than all the other interlayer interaction energies, indicating that it is the ionic bond that is mainly responsible for holding the layers together in 1 and 2 intercalate crystals. The energy is dependent only on interacting ion charges and their spatial distribution, being independent of the ions’ nature. These energies are essentially the same because they can be treated as the Madelung energies of the crystals.44–47 The Madelung constants for 1 and 2 are equal as both compounds crystallise in the same invariant crystal structure type. The Madelung energy, on the other hand, depends also on the interionic distances and, hence, the observed differences.48 We have computed the electrostatic energy of the ionic NH4N3 and KN3 lattices obtained from the optimised intercalate 1 and 2 structures by removing As2O3 sheets. We have used a method for calculating Madelung constants implemented in the EUGEN code.49 The electrostatic energy values are given in Table 1. The absolute values obtained from periodic DFT calculations are smaller than the energy evaluated with the EUGEN code, as the DFT values take into account screening by the As2O3 sheets. These values are also significantly lower than the lattice energies of ionic NH4N3 and KN3 crystals which amount to −670.3 and −673.2 kJ mol−1, respectively (all ions were treated as point charges and crystal structures were taken from ref. 37 and 38). The crystallisation of intercalates causes spatial separation of cations and anions by neutral As2O3 sheets, leading to a substantial decrease of ionic bond strength. Nonetheless, the studied compounds are an interesting example of hybrid materials whose structures are governed by covalent As–O bonds in two dimensions (ab planes) and by ionic bond in the third direction (Z axis).
The ECL and ELC energies for compound 1 differ significantly from each other, which stems from the fact that different interlayer hydrogen bond motifs are cut in the two cases. In the case of the CL boundary, there are three hydrogen atoms pendant from cationic layers, whereas there is only one in the case of the LC boundary. The hydrogen atom is in addition less favourably located for hydrogen bond formation than the other three. This results in an interaction energy smaller by 15.6 kJ mol−1 for boundary LC. An analogous |EAL − ELA| energy difference amounts to as little as 0.7 kJ mol−1. Surprisingly, the C⋯L interaction energies are higher for potassium than for ammonium cations, while A⋯L interaction energies are very similar in 1 and 2. It is important to realise that the C⋯L interlayer interaction energies are much higher than the A⋯L interaction energies, which points to stronger cation interactions with As2O3 sheets.
Closer inspection of the 12-fold coordination sphere of potassium and ammonium cations with K⋯O and N⋯O distances of 3.0790(19) and 3.1349(14) Å, respectively, reveals its resemblance to cations’ coordination by 18-crown-6 ethers, where the K⋯O and N⋯O average separations are 2.85(8) and 2.97(7) Å, respectively.50 Cation⋯oxygen distances are lower for the complexes with crown ethers as cations enter the cavity of the chelating ligands while they are sandwiched between two crown-ether-like As6O12 rings in the intercalates. This and the fact that interaction energies with cations are higher than that with anions may indicate a templating effect of cations during intercalates crystallisation. It might be assumed that sandwich complexes of cations with six-membered As6O12 rings are formed at the first stage, which in turn condense to yield As2O3 layers. All of the so-far-studied arsenic(III) oxide intercalates containing potassium and ammonium cations crystallise with As2O3 sheets displaying the same geometry.10,11 The only intercalate structure with different As2O3 sheet geometry is the one with NaBr, confirming the decisive role of cations in the shaping of arsenic(III) oxide sheets.12 However, our attempts to obtain an intercalate with NaN3 in an analogous procedure to the one described above proved unsuccessful.
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| Fig. 3 Raman spectra of compounds 1 and 2. Spectra in the whole registered wavenumber range are depicted in Fig. S3 in the ESI.† | ||
| Symmetry | 1 | 2 | Assignment | ||
|---|---|---|---|---|---|
| NH4N3·2As2O3 | KN3·2As2O3 | ||||
| Exp | B3LYP-D* | Exp | |||
| a p stands for polarized. | |||||
| 1 | A1g | 109 p | 97 | 113 p | δ sAsO3 |
| 2 | E2g | 215 p | 185 | 217 p | δ sAsO3 |
| 3 | E1g | 322 p | 318 | 321 p | δ sAsO3 |
| 4 | E2g | 550 p | 555 | 555 p | δ sAsO3 |
| 5 | E1g | 602 p | 607 | 604 p | δ sAsO3 |
| 6 | A1g | 685 p | 682 | 686 p | δ sAsO3 |
| 7 | A1g | 1328 p | 1323 | 1329 p | ν sN3 |
| 8 | 3190 p | N–H stretching | |||
The Raman spectrum of compound 1 contains a peak at 3190 cm−1 which we attribute to N–H vibrations. The bands corresponding to As2O3 layer vibrations as well as to the symmetric stretching of azide anions are present in the spectrum of compound 1 and they are located at the same frequencies as in compound 2 within a few inverse centimetres range (see Table 2).
This remarkable agreement is understandable given that the exchange of potassium for ammonium cation exercises a rather weak influence on As2O3 sheets. Consequently, we expect the frequencies of the As2O3 layer deformations to remain largely unchanged as different kinds of anions and cations are introduced into the crystal structure as long as the symmetry and topology of layers are retained.
The assignment for compound 1 was not attempted by comparison with the computationally predicted spectrum as calculations were carried out in the P31m space group. Lowering of the symmetry, especially removal of the inversion centre, has a significant impact on the spectrum and on the symmetry of vibrations, making comparison with experimental spectra very difficult. See Fig. S3 and Tables S5 and S6 in the ESI† for more results concerning the frequency calculations of intercalates 1 and 2.
Footnotes |
| † Electronic supplementary information (ESI) available: Derived formulae for interlayer interaction energies, powder diffraction patterns and Raman spectra of compounds 1 and 2, detailed results of geometry optimisations and frequency calculations. See DOI: 10.1039/c4dt01569j |
| ‡ Crystal data for compound1: 2As2O3·NH4N3, M = 455.76 g mol−1, a = 5.2354(3) Å, b = 5.2354(3) Å, c = 9.6787(5) Å, α = 90°, β = 90°, γ = 120°, V = 229.75(3) Å3, T = 293(2) K, space group P6/mmm, Z = 1, μ(MoKα) = 14.432 mm−1, 7048 reflections measured, 171 independent reflections (Rint = 0.0493). The final R1 and wR(F2) values (I > 2σ(I)) were 0.0155 and 0.0379, respectively. The final R1 and wR(F2) values (all data) were 0.0192 and 0.0388, respectively. The goodness of fit on F2 was 1.220. Crystal data for compound2: 2As2O3·KN3, M = 476.81 g mol−1, a = 5.2425(10) Å, b = 5.2425(10) Å Ĺ, c = 9.4865(17) Å, α = 90°, β = 90°, γ = 120°, V = 225.79(10) Å3, T = 45(2) K, space group P6/mmm, Z = 1, μ(synchrotron) = 2.872 mm−1, 775 reflections measured, 154 independent reflections (Rint = 0.0236). The final R1 and wR(F2) values (I > 2σ(I)) were 0.0220 and 0.0538, respectively. The final R1 and wR(F2) values (all data) were 0.0225 and 0.0539, respectively. The goodness of fit on F2 was 1.356. |
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