Sarah L.
Binkley
a,
Thomas C.
Leeper
*a,
Roger S.
Rowlett
b,
Richard S.
Herrick
c and
Christopher J.
Ziegler
*a
aDepartment of Chemistry, University of Akron, Akron OH 44325-3601, USA. E-mail: tleeper@uakron.edu; ziegler@uakron.edu
bDepartment of Chemistry, College of the Holy Cross, Worcester, MA 01610, USA. E-mail: rherrick@holycross.edu
cDepartment of Chemistry, Colgate University, 13 Oak Drive, Hamilton, NY 13346, USA. E-mail: rrowlett@colgate.edu
First published on 1st August 2011
The reaction of Re(CO)3(H2O)3+ with hen egg white lysozyme in aqueous solution results in a single covalent adduct. Both NMR spectroscopy and single crystal X-ray diffraction show that the rhenium tricarbonyl cation binds to His15via replacement of one of the coordinated water molecules. The formation of this adduct does not greatly affect the structure of the protein.
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Fig. 1 Structure of the M(CO)3(H2O)3+ cations. |
In addition to the development of diagnostic and therapeutic compounds, complexes containing the Re(CO)3+ moiety are currently being used to measure biological electron transfer. Specifically Re(CO)3(diimine)+ derivatives bound to a specific amino acid residue have been used as photoinduced electron transfer agents. Upon photoexcitation, the rhenium center undergoes a metal to ligand charge transfer (MLCT) transition, resulting in a transient Re(II) species.11,12 Most notably, Re(CO)3(diimine)+ fragments have been appended to the periphery of proteinsviahistidine groups to investigate the effects of protein structure on electron transfer kinetics.13
Accordingly, there has been increasing interest in the coordination chemistry of rhenium with biological molecules. In part, this chemistry has been driven as a result of the development of bifunctional chelating agent (BFCA)-based drug design strategies. Over the past few years, the binding of the Re(CO)3+ unit to nucleic acids and nucleotides14–18 as well as amino acids and polypeptides19–22 has been investigated. In our recent work, for example, we have observed that Re(CO)3(H2O)3+ forms discrete complexes with N-acetyl histidine and histidylhistidine, and the latter complex is stable in the presence of biological nucleophiles.23 However, there has been little work on rhenium–protein complexes as models for technetium-based imaging agents or rhenium-based therapeutic agents. Investigations of protein binding would provide useful information on possible biological processing of rhenium and technetium drugs, assist with the development of new protein-based drug candidates, and improve the synthesis of protein–rhenium diimine adducts for electron transfer studies.
Previously, we found that crystals of the protein hen egg white lysozyme (HEWL) grown from a solution containing Re(CO)3(H2O)3+ deliver a structure where the cation binds to a single amino acid side chain at the periphery of the proteinviaNε2 of the His15 imidazole ring.24 This imidazole replaces a water in the Re(CO)3(H2O)3+ cation, affording a monosubstituted complex. This selective binding can be readily observed by both IR spectroscopy and mass spectrometry.
In this report, we continue our structural study on the interaction between the Re(CO)3(H2O)3+ cation and HEWL. In addition to providing more detail from our previous structural characterization, we were able to generate the complexed protein by using the standard crystal soaking approach,25 and a solution study performed by NMR spectroscopy; in each case we observe structures identical to the structure previously reported, demonstrating that the mode of binding is independent of the mode of crystal growing and of whether the structure is packed in a crystal or dissolved in solution. In each case, the ligation of Re(CO)3(H2O)2+ to the periphery of lysozyme has minimal effect on the overall structure of the protein. The NMR experiments show that the timescale for rhenium binding to the periphery of lysozyme generally agrees with the known substitution kinetics of the Re(CO)3(H2O)3+ ion.26–29 Further we comment on the bonding of the Re(CO)3(H2O)2+ ion and note ways it could be enhanced.
a Parentheses indicate information for highest resolution shell. b Based on ideal values from Engh and Huber.50 c MolProbity analysis.51 | |
---|---|
Data collection statistics | |
Wavelength | 1.54 Å |
Space Group | P43212 |
Cell parameters | a = b = 78.71 Å, c = 36.99 Å |
Resolution | 11.99–1.60 Å (1.66–1.60 Å)a |
Unique reflections | 15847 (1591) |
Redundancy | 22.4 (16.9) |
Completeness | 99.7 (100) |
R sym | 0.091 (0.670) |
I/σI | 32.6 (2.78) |
Refinement statistics | |
Reflections in test set | 794 |
R work (%) | 18.1 (25.8) |
R free (%) | 21.5 (31.9) |
Rmsd from idealb | |
Bond distance (Å) | 0.015 |
Bond angle (°) | 1.55 |
Ramachandran plot outliers (%)c | 0.00 |
When considering the protein lysozyme, there are a variety of potential metal binding sites at the periphery of the protein, and the external lysines have been an oft-used target.38,39 However, recent efforts have focused on the single peripheral imidazole ring at His15.40 Fontecilla-Camps et al. observed the binding of a Mn(CO)3(H2O)2+ unit to the His15 site of lysozyme,41 forming a protein adduct where the metal adopts an octahedral geometry. The coordination sphere in this protein complex consists of three facial carbonyl units, two water molecules and the imidazole ring of the histidine. Sadler et al. have reported an organometallic Ru-lysozyme complex.42 More recently, Romao et al. presented a communication on the soaking of lysozyme crystals with fac-Ru(CO)3Cl(κ2-H2NCH2COO).43 The metal primarily formed an adduct at the His15 site analogous (80% occupancy) to that seen with the Mn(I) chemistry except with two ciscarbonyls instead of three facial carbonyls. Additionally, ruthenium binding is also observed at two carboxylate side chains from amino acids Asp18 and Asp52 with 50% and 40% occupancies, respectively.
We carried out an initial evaluation using MALDI-TOF mass spectrometry to determine whether the Re(CO)3(H2O)3+ ion binds to lysozyme. We exposed lysozyme solutions (1 mg mL−1protein) in pure water to several stoichiometries of the Re(CO)3(H2O)3+ ion, and the observed mass spectra are shown in Fig. 2. Unmodified lysozyme shows a peak at approximately 14300 m/z, in agreement with its experimentally determined molecular weight.44 As the ratio of Re(CO)3(H2O)3+ ion to protein increases, a peak that corresponds to an increase in mass of approximately 270 appears and increases in intensity. This mass change corresponds to the weight of the Re(CO)3+ unit, a clear indicator that the Re(CO)3(H2O)3+ ion is interacting with the protein, possibly via coordination of one or more amino acid side chains.
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Fig. 2
MALDI mass spectra of (a) native lysozyme, (b) 1![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
We also carried out a preliminary investigation into the binding of rhenium to lysozyme by using equilibrium dialysis. Samples of varying HEWL concentration were dialyzed against a solution of the Re(CO)3(H2O)3+ ion in phosphate buffer at pH 5.8. Total rhenium concentrations inside and outside of the dialysis bag were determined by ICP-MS. These experiments with Re(CO)3(H2O)3+ revealed a coarsely determined Kd of about 50 μM, consistent with the NMR-observed fast exchange behavior reported below. There has been some kinetics studies on simple ligands binding to Re(CO)3(H2O)3+ and the system most similar to the histidine side chain is the pyrazine system studied by Alberto et al.27 However, the analogous Kd for pyrazine and Re(CO)3(H2O)3+ (based on the reported Ka) is in the range of 10−2–10−3. The discrepancy in Kd can be rationalized several ways. First, the pyrazineKa was determined in a higher concentration of electrolyte (I = 1 M) than was used in our protein experiments, where the concentration of phosphate was only 0.05 M. In addition, the Re(CO)3(H2O)3+ can readily interact with anionic residues or side chain heteroatoms on the surface of lysozyme prior to ligation, which could result in an increased affinity. Lastly, the pyrazine experiments were conducted at low pH, and we would expect the presence of deprotonated acid residues to increase the affinity of the Re(CO)3(H2O)3+ ion. In particular, one acidic residue, Asp87, is within 4 Å of the rhenium atom in this structure (vide infra).
Using NMR we have probed the nature of Re(CO)3(H2O)3+ interaction with HEWL. 2D 1H–13C HSCQ spectra were collected on 24 h equilibrated complexes with various ratios of freshly prepared Re(CO)3(H2O)3+ solution. For the most part, chemical shifts of the protein were unchanged from published values.45 Only residue His15 shows appreciable chemical shift changes (Fig. 3, Insets). Thus only one specific site in HEWL is metallated by rhenium under these conditions. Additionally, the gradual chemical shift changes observed as a function of Re(CO)3(H2O)3+ concentration suggest fast chemical exchange between free metal ion and protein bound metal ion with regard to the NMR chemical shift timescale.
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Fig. 3
13C HSQC spectra collected on 5 mM HEWL titrated with Re(CO)3(H2O)3+ at 0![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
We also collected 1H 1D spectra on these complexes and the aromatic/exchangeable proton region is shown in Fig. 4. Slow and incomplete H2O to D2O exchange permitted observation of amide and tryptophan indole resonances that shift upon metalation. All of the peaks move with apparent fast exchange with regard to chemical shift, although the peaks shift around surprisingly slowly relative to the timing of rhenium addition. The two carbon-bound, and hence non-solvent exchangeable, proton resonances from H15 that shift and broaden upon Re(CO)3(H2O)3+ addition are also labeled. The remaining resonances shift and broaden due to the combined process of slow deuterium exchange and rhenium binding. Mapping these changes onto the crystal structure of unmodified HEWL (Fig. 5) shows that majority of the changes correlated to two places, the binding site and two tryptophan indoles nearby. These later changes are probably a result of slight changes in the H2O to D2O exchange properties of these residues. The sites confirmed by NMR to be high occupancy sodium and chloride, rather than low occupancy rhenium, binding sites are indicated by the small blue spheres.
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Fig. 4 1D spectra collected at 400 Mhz on 4 mM lysozyme freshly dissolved in 100% D2O (red), and the same sample with 2 equivalents of Re(CO)3(H2O)3+ after 24 h (black). |
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Fig. 5 Amide chemical shift changes mapped on to the HEWL surface structure. Tentatively assigned residues that experience amide or indole chemical shift changes upon metalation are rendered purple. His15 experiences both amide and 13C imadizole shift changes (the only residue with changes in the 13C HSQC) and is colored cyan. |
To elaborate upon the rate of metalation, we collected a 24 h time-course, monitoring the chemical shift changes in protein resonances upon immediate introduction of an excess of Re(CO)3(H2O)3+ to HEWL (Fig. 6). In spite of the apparently “fast” chemical shift changes observed above, changes in the specra of HEWL took at least an hour to finish. This was surprising due to the fast exchange behavior and, as will be discussed below, indicates that Re(CO)3(H2O)3+ metalation is not a simple on/off (i.e. bimolecular) mechanism. In addition, the water exchange rates as investigated by Merbach et al. are clearly relevant to these processes.26
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Fig. 6 Time dependent chemical shift changes for H15 HE1 show unusually slow “fast-exchange” behavior, i.e. one peak shifting between starting and ending chemical shifts. (a) Interferogram of the time dependence of chemical shift changes upon metalation. (b) Non-linear fit to y = y0 + A*exp−Tau*x of the boxed region in panel A. y0 = 3556.8 ± 0.07 Hz, A = −6.15 ± 0.23, Tau−1 = 1.22 ± 0.13 Hours. |
We were able to grow crystals from HEWL solutions exposed to Re(CO)3(H2O)3+ at 4° overnight using the hanging drop method. The concentration of the HEWL was 50 mg mL−1protein in 0.05 M MES buffer, pH 5.5, and 0.8 M NaCl. Large tetragonal crystals suitable for X-ray diffraction structure elucidation formed after 48–72 h. It is important to note that adduct formation was carried out in solution prior to crystal growth; typically, metal ligation is achieved only by soaking crystals in reagent solutions. We also observed that rhenium adducts could be produced via soaking methods; the structural parameters for these crystals were identical to those grown from solution.
The IR spectra of these rhenium-modified HEWL crystals were investigated to determine if we could observe the C–O stretching frequencies of the facial Re-tricarbonyl unit. In the 1800–2200 cm−1 region, unmodified lysozyme is transparent, but Re(CO)3+ compounds exhibit bands corresponding the the a1 and e modes of pseudo-C3v symmetry. Rhenium modified lysozyme crystals show ν(CO) stretching bands that match these modes, shown in Fig. 7. These modes do not correspond to those of free Re(CO)3(H2O)3+ ion, which has a1 and e bands at 2036 and 1916 cm−1.4 These rhenium-modified lysozyme crystals exhibit a splitting of the a1 band, which we show (vide infra) may result from multiple rotamers of the Re(CO)3+ unit in the solid state.
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Fig. 7 IR spectra of the carbonyl stretching region of unmodified lysozyme (dashed line) and Re(CO)3(H2O)3+ modified lysozyme (solid line). |
We collected X-ray data on a crystal grown from the conditions described above to 1.6 Å resolution. A ribbon diagram of the structure of the rhenium protein adduct is shown in Fig. 8 along with a superposition of both native (PDB code 6LYZ) and rhenium-modified HEWL. The rhenium binds to the His15 imidazole side chain, and as expected, the Re(CO)3(H2O)3+ ion has lost a water molecule, forming a imidazole bound Re(CO)3(H2O)2+ fragment. In agreement with the observed NMR data, coordination of the rhenium to the His15 site does not greatly modify the structure of the protein. The RMS deviation between the α-carbons of the two protein models is 0.27 Å. As can be seen by superposition (Fig. 8), the most obvious structural accommodations for the rhenium complex binding is a flipping of the imidazole of His15 and a slight deviation in backbone position of this residue.
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Fig. 8 Top: Ribbon diagram of HEWL with Re(CO)3(H2O)2+ bound to its unique site at Nε2 of His15. Hydrogen bond between Asp87 and water W1 of Re(CO)3(H2O)2+ is depicted as a magenta dashed line. Bottom: A superposition of both native (PDB code 6LYZ) and rhenium-modified HEWL. |
Fig. 9 shows the Fo − Fc omit map of the lysozyme–Re(CO)3(H2O)2+ adduct, contoured at 2.5σ. The occupancy of the Re(CO)3(H2O)2+ fragment in the model is less than 1.0 and was modeled at 0.60, consistent with the MALDI-MS data that indicates partial derivatization of the protein. The refined Re–O bond distance for water W2 is somewhat long (2.6 Å compared to the expected 2.2 Å as observed for W1), suggesting that there are at least two significantly populated rotamers of the Re(CO)3(H2O)2+ adduct, related by a 90° rotation about the Re–N bond. In the final model, however, only the principal rotamer was modeled. Partial occupancy of a CO ligand at the W2 position results in the Re–O bond having an artificially long Re–O bond distance. The observation that the electron density of the Re(CO)3(H2O)2+ fragment is well-ordered, rather than averaged, because of free rotation about the Re–N axis, is possibly due to the stabilizing hydrogen bond between Oδ2 of Asp87, and a water ligand (W1 in Fig. 9) on the rhenium. The Asp87–Oδ2–water distance (2.5 Å) in the X-ray structure is consistent with this interpretation. In the principal rotamer, Asp87 interacts with W1; in the minor rotamer, Asp87 interacts with W2. The Re–N distance of 2.2 Å compares well to related small molecule structures. 46
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Fig. 9 F o − Fc omit map of the lysozyme–Re(CO)3(H2O)2+ adduct, contoured at 2.5σ. Arg14 has weak electron density and has alternate conformations, and does not appear to interact with Re(CO)3(H2O)2+. |
In addition to collecting X-ray data on crystals grown from lysozyme-rhenium reaction solutions, we also investigated the soaking of lysozyme crystals with the Re(CO)3(H2O)3+ ion. This reaction is analogous to the soaking experiments carried out by Fontecilla-Camps and coworkers with Mn(CO)3(H2O)3+ ion.41 We were able to collect data that was identical to that of the solution-based reaction crystals, with rhenium modification at His15. In addition, we also investigated soaking lysozyme–rhenium crystals with a chelating diimine, glyoxime. Glyoxime and other dioximes have been shown to avidly bind to Re(CO)3+ centers, and are structurally analogous to the diimine systems investigated by Gray et al.13 However, exposure of lysozyme–rhenium crystals to glyoxime leached the rhenium metal center away from the protein, regenerating unmodified lysozyme.
The reversible bonding of Re(CO)3(H2O)2+ to His15, as indicated by the fact that soaking the metalated crystal with glyoxime completely removed the bound rhenium, suggests that vicinal surface-bound histidines might be necessary to create complexes that might withstand biological conditions. Alternatively, His-tags23,47or the use of recombinant DNA techniques could produce suitable binding environments. We are currently looking for suitable candidates.
The time constant (τ) for the initial exchange of Re(CO)3(H2O)3+ onto HEWL is 1.2 h, i.e. with a rate of ∼2 × 10−4s−1 (Fig. 4), whereas fast exchange behavior on the chemical shift timescale (Fig. 1 and 2) is usually observed for states with lifetimes of ∼100 μsec. The eight orders of magnitude difference can only be explained if binding of rhenium to the protein is not simply a two-state process, but is limited due to a long-lived initially unreactive species. We hypothesize that it is the dissociative interchange from Re(CO)3(H2O)3+ that is the rate limiting since previous work suggested that this process has a similar magnitude rate (7.6 × 10−4 M−1s−1) for the dimethyl sulfide monitored formation of Re(CO)3(H2O)2(DMS)+ from the triaqua compound.48 This is significant because it suggests that protein metalation is highly dependent upon the residence time of coordinated waters. Modulation of the residence time of a single water may be achievable by substitution of the other two waters with different ligands such as 2,2′-bipyridine or similar diimines.49 This should suppress dissociation of the remaining water and prolong its residence time. Modulation of the residence time of the remaining water, and hence speed of protein metalation, may be important for engineering rhenium to be a viable imaging probe or antineoplastic agent.
This journal is © The Royal Society of Chemistry 2011 |