Simon D.
Nielsen‡
a,
Marica
Fulco‡
ab,
Michaela
Serpi‡
ab,
Birgitte
Nielsen
a,
Maria B.
Hansen
a,
Kasper L.
Hansen
a,
Christian
Thomsen
d,
Robb
Brodbeck
d,
Hans
Bräuner-Osborne
a,
Roberto
Pellicciari
b,
Per-Ola
Norrby
c,
Jeremy R.
Greenwood
e and
Rasmus P.
Clausen
*a
aDepartment of Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Copenhagen, Universitetsparken 2, 2100, Copenhagen, Denmark. E-mail: rac@farma.ku.dk; Fax: +45 35 33 60 41; Tel: +45 35 33 65 66
bDipartimento di Chimica e Tecnologia del Farmaco, Università di Perugia, Italy
cDepartment of Chemistry, Göteborg University, Sweden
dLundbeck Research USA, Paramus, NJ, USA
eSchrodinger Inc., 120 W 45th St, New York, NY 10036, USA
First published on 23rd September 2011
The three conformationally restricted COMPOUND LINKS
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Download mol file of compoundcyclopropyl glutamate analogues (3, 4, 5) were synthesised and their affinity for ionotropic and activity at metabotropic COMPOUND LINKS
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Download mol file of compoundglutamate receptors were probed. Compound 4 turned out to be a highly selective agonist at the metabotropic glutamate receptor mGluR2 with at least two orders of magnitude selectivity in potency compared to the very homologous mGluR3 as well as mGluR1, 4, 5, 7. We also tried to synthesise the two epimers of 6, but the two compounds underwent fast epimerisation in COMPOUND LINKS
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Download mol file of compoundH2O. Furthermore, two COMPOUND LINKS
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Download mol file of compoundcyclopropyl arginine analogues (COMPOUND LINKS
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Download mol file of compound7, 8) were synthesised and characterised pharmacologically at GPRC6A.
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Fig. 1 COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundGlutamic acid and its conformationally restricted analogues (1–8). |
Conformational restriction of the COMPOUND LINKS
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Download mol file of compoundcarbon skeleton of Glu analogues has been important for achieving selectivity among Glu receptor subtypes. However, the 1,2-cyclopropyl analogues of Glu were never characterised pharmacologically. This spurred our interest in developing a new synthesis route for the Glu analogues 3 and 4 (Fig. 1).
These analogues are interesting not only as receptor ligands, but also as unnatural amino acid analogues for incorporation into peptides and proteins.
The synthesis and pharmacology of the enantiomers of COMPOUND LINKS
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Download mol file of compoundTDPA (COMPOUND LINKS
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Download mol file of compound1)7 and homo-TDPA (2)8 (Fig. 1) were previously reported from our department and all four compounds affect COMPOUND LINKS
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Download mol file of compoundglutamate receptors and transporters with various degrees of selectivity. Unexpectedly, both enantiomers of COMPOUND LINKS
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Download mol file of compound1 displayed similar affinity at AMPA binding sites and both enantiomers of 2 were equipotent in the activation of mGluR2 receptors. Such selectivity for (R)-enantiomers is quite unusual at these two receptor groups since they normally prefer the S-configuration of the amino acid.9
Restricting conformational freedom and introducing an extra stereocenter via a cyclopropane ring could potentially narrow the pharmacological profile of COMPOUND LINKS
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Download mol file of compoundTDPA derivatives, and lead to more selective ligands. Since the synthetic route of Glu analogues 3 and 4 could enable access to restricted COMPOUND LINKS
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Download mol file of compoundTDPA analogues 5 and 6, and restricted COMPOUND LINKS
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Download mol file of compoundarginine analogues COMPOUND LINKS
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Download mol file of compound7 and 8, we also decided to explore these as target molecules. We here report the syntheses of the five conformationally restricted amino acids 3, 4, 5, COMPOUND LINKS
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Download mol file of compound7, 8 and our attempts to make the COMPOUND LINKS
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Download mol file of compoundcyclopropane epimers of COMPOUND LINKS
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Download mol file of compoundTDPA trans- and cis-6 (Fig. 1). Furthermore, the pharmacological characterisation of the compounds 3, 4 and 5 on iGluRs and mGluRs and of compounds COMPOUND LINKS
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Download mol file of compound7 and 8 on the recently discovered COMPOUND LINKS
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Download mol file of compoundL-arginine activated receptor GPRC6A was established. The GPCR6A receptor is homologous to mGluRs.3
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Scheme 1 (a) COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundNaH/COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundDME, rt, 22 h. (b) NaIO4, RuCl3·H2O, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCCl4, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH3CN, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundH2O, rt, 17 h. (c) (i) ClCO2Et, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundEt3N, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundTHF, 0 °C, 35 min; (ii) NaN3, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundH2O, 0 °C to rt, 50 min; (iii) t-BuOH, reflux, 15 h. (d) K2CO3, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundMeOH. |
The two isomeric alcohols served as building blocks in the synthesis of 3, 4, 5, COMPOUND LINKS
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Download mol file of compound7, and 8. Treatment of 16 and 17 with NaIO4 and RuCl3·H2O gave the carboxylic acids 18 and 19 in 57% yield and 82% yield respectively. Removal of the protection groups was carried out using COMPOUND LINKS
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Download mol file of compoundTFA in COMPOUND LINKS
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Download mol file of compoundCH2Cl2 and gave 3 and 4 in 65% and 75% yields respectively (Scheme 2). The synthesis of a single stereoisomer of compound 4 has previously been reported by Jiménez and Ortuño in 1996.11
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Scheme 2 (a) NaIO4, RuCl3·H2O, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCCl4, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH3CN, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundH2O, rt, 3 h. (b) CF3COOH, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH2Cl2, rt, 3 h. |
In the synthesis of COMPOUND LINKS
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Download mol file of compound7 and 8, the Mitsunobu reaction was used to convert alcohols 16 and 17 to the COMPOUND LINKS
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Download mol file of compoundguanidine-derivatives 20 and 21. Removal of the protection groups in 20 and 21 was carried out using COMPOUND LINKS
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Download mol file of compoundTFA in COMPOUND LINKS
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Download mol file of compoundCH2Cl2 and gave COMPOUND LINKS
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Download mol file of compound7 and 8 in good yields (Scheme 3).
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Scheme 3 (a) Ph3P, DIAD, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundTHF, 0 °C to rt, 20 h. (b) CF3COOH, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH2Cl2, rt, 3 h. |
Oxidation of 16 with DMP followed by the Strecker reaction yielded α-amino nitrile 22 in 66% yield after the two steps. The α-amino nitrile 22 was converted crude to α-amino amide 23 in 63% yield after aqueous workup. COMPOUND LINKS
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Download mol file of compoundThionylaniline in COMPOUND LINKS
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Download mol file of compoundpyridine converted 23 to COMPOUND LINKS
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Download mol file of compoundthiadiazole COMPOUND LINKS
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Download mol file of compound24 in 16% yield. Removal of the protection groups was done with COMPOUND LINKS
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Download mol file of compoundTFA in COMPOUND LINKS
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Download mol file of compoundCH2Cl2 to give the final product 5 in 64% yield (Scheme 4).
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Scheme 4 (a) (i) DMP, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH2Cl2, rt, 1 h; (ii) KCN, NH4OH, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundMeOH, rt, 16 h. (b) 1 M COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundNaOH, H2O2, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundTHF–COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundEtOH, 0 °C, 2 h. (c) COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundN-Thionylaniline, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundpyridine, 0 °C to rt, 2 h. (d) CF3COOH, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH2Cl2, rt, 3 h, evaporation from 1 M COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundHCl. |
The first step in the route to 6 is a cyclopropanation of the protected COMPOUND LINKS
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Download mol file of compounddehydroalanine 25 (Scheme 5). Reaction with ethyl dimethylsulfuranylidene acetate gave only 26, whereas reaction with COMPOUND LINKS
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Download mol file of compoundethyl diazoacetate gave an epimeric mixture of 26 and 27. The latter contrasts with the reaction of COMPOUND LINKS
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Download mol file of compoundethyl diazoacetate with the methyl ester of 25, which only gives the trans-product. Although it enabled access to 27, even meticulous column chromatography could not remove 10% contamination with 26 which remained in the rest of the synthesis of 36. Attempts to enrich 27 by epimerisation of 26 with various bases (LiHMDS, COMPOUND LINKS
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Download mol file of compoundLDA, COMPOUND LINKS
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Download mol file of compoundNaH) gave only the starting material.
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Scheme 5 Cyclopropanation of protected COMPOUND LINKS Read more about this on ChemSpider Download mol file of compounddehydroalanine 25. |
The aldehydes 29 and 33 (Scheme 6) could not be obtained by selective reduction with DIBAl-H. The reaction was hampered by removal of one COMPOUND LINKS
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Download mol file of compoundBoc group and complete reduction to the alcohol leading to complex mixtures depending on the temperature and solvent. COMPOUND LINKS
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Download mol file of compoundLiBH4 did not react and COMPOUND LINKS
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Download mol file of compoundLiAlH4 led to degradation, but reduction of the ester with 2 eq. of DIBAl-H in COMPOUND LINKS
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Download mol file of compounddiethyl ether at −40 °C for 30 min and 3 eq. of DIBAl-H in COMPOUND LINKS
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Download mol file of compounddiethyl ether at −40 °C for 4 h gave satisfactory yields of the respective alcohols 28 and 32.
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Scheme 6 (a) DIBAl-H, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundEt2O. (b) DMP, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH2Cl2. (c) NH4Cl, KCN, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundH2O, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundMeOH. (d) COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundNaOH, H2O2, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundH2O, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundTHF, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundEtOH. |
Oxidation with DMP gave the aldehydes trans- and 29 and 33 in good yields. Under Strecker conditions, the aldehydes 29 and 33 yielded α-amino nitriles 30 and 34, both products as a diastereomeric mixture (5:
4). These products were converted in crude form to α-amino amides 31 and 35 which could be purified by column chromatography yielding 31 and 35 as a diastereomeric mixture (2
:
5) in 55% and 45% yields respectively, for the two steps. The diastereomers of 30 could be separated, and although one diastereomer (30a) converted well to 31 (67%) the other (30b) gave low yield (21%) due to base catalysed cyclopropane ring opening giving 36 (38%) most likely by the mechanism shown in Scheme 7. The proposed mechanism enables an establishment of the relative stereochemistry of the introduced stereocenter in 31, and emphasises the α-anion stabilising character of the di-Boc amino protecting group employed, which also led to partial racemisation in the synthesis of homo-TDPA.8
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Scheme 7 Proposed elimination reaction leading to 36. |
Cyclising 31 with COMPOUND LINKS
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Download mol file of compoundthionyl chloride and COMPOUND LINKS
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Download mol file of compoundtriethylamine at −78 °C gave 37 in 13% yield. When instead COMPOUND LINKS
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Download mol file of compoundthionylaniline was employed the yield was improved to 74%. Attempts to cyclise 35 were not successful.
Final deprotection of 37 with COMPOUND LINKS
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Download mol file of compoundTFA (Scheme 8) gave at first an almost clean 1H-NMR spectrum in D2O of the crude product, but surprisingly, the product epimerised after a while resulting in a 1:
4 cis-6/trans-6 equilibrium mixture. The epimeric mixture was therefore subjected to preparative HPLC and elution with 0.1% COMPOUND LINKS
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Download mol file of compoundTFA or 1 mM AcOH confirmed the 1:
4 ratio. However, the isolated product epimerised completely upon evaporation. HPLC analysis (Fig. 2) of the first minor peak revealed that epimerisation completes in ca. 15 min. Analysis of the latter peak confirmed this. Thus, epimerisation was apparently slower in the first more acidic, crude NMR solution. The proton on the cyclopropane ring does not exchange, and the mechanism therefore seems to involve opening of the cyclopropane ring.
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Scheme 8 (a) COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundThionylaniline, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundpyridine. (b) COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundTFA, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundCH2Cl2. |
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Fig. 2 HPLC diagrams of: (A) a preparative separation of the epimeric mixture of 6, (B) immediate HPLC analysis of the 2.57 peak and (C) after 10 min (note the enhanced baseline between the peaks due to the constant epimerisation). Eluent: 1 mM AcOH. |
The unexpected epimerisation prompted us to investigate plausible paths for inversion of the ring carbons using DFT methods. The increase of rate with pH indicates that epimerisation occurs in a neutral or anionic protonation state of 6. It was found that the amine lone pair can assist in heterolytic fragmentation of the ring, leading to a tri-ionised intermediate with higher energy but only low barriers to rotation (Scheme 9).
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Scheme 9 Epimerisation of 6. |
The transition state with a low bond rotation barrier (Fig. 3) is ca. 100 kJ mol−1 higher in energy than 6, in good agreement with the observed rapid reaction.
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Fig. 3 Transition state for epimerisation of the anion of 6. |
AMPA IC50/μM | KAIN IC50/μM | COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundNMDA Ki/μM |
mGluR1 EC50/μM | mGluR2 EC50/μM | mGluR3 EC50/μM | mGluR4 EC50/μM | mGluR5 EC50/μM | mGluR7 EC50/μM | |
---|---|---|---|---|---|---|---|---|---|
a The data are mean of 3 individual experiments performed in triplicate. In brackets, pKi values with SEM are listed. Not determined is abbreviated “nd” in the table. | |||||||||
Glu | 0.34 | 0.38 | 0.20 | 1.6 | 1.8 | 0.06 | 3.2 | 4.7 | 1180 |
[5.80 ± 0.07] | [5.74 ± 0.04] | [7.24 ± 0.08] | [5.49 ± 0.03] | [5.33 ± 0.02] | [2.93 ± 0.10] | ||||
(S)-homo-TDPA8 | >100 | >100 | >100 | >1000 | 40 ± 3 | nd | >1000 | 190 ± 80 | nd |
(R)-homo-TDPA8 | >100 | >100 | >100 | >1000 | 37 ± 3 | nd | >1000 | >1000 | nd |
3 | >100 | >100 | 77 | 6.1 | 23 | 200 | >1000 | 19 | >1000 |
[4.11 ± 0.037] | [5.21 ± 0.04] | [4.65 ± 0.02] | [3.70 ± 0.05] | [4.72 ± 0.04] | |||||
4 | >100 | >100 | 72 | >1000 | 10 | >1000 | >1000 | >1000 | >1000 |
[4.14 ± 0.01] | [4.98 ± 0.04] | ||||||||
5 | >100 | >100 | 19 | 3.0 | 251 | nd | >1000 | nd | nd |
[4.73 ± 0.01] | [5.52 ± 0.03] | [3.60 ± 0.03] |
The COMPOUND LINKS
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Download mol file of compoundguanidine derivatives COMPOUND LINKS
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Download mol file of compound7 and 8 were characterised for their activity on the promiscuous amino acid receptor mouse GPRC6A (see Table 2). The compounds showed improved potency for COMPOUND LINKS
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Download mol file of compound7 and comparable potency for 8 when both were compared to COMPOUND LINKS
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Download mol file of compoundL-arginine.
Mouse GPRC6A EC50/μM | |
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a In brackets, pKi values with SEM are listed. In parenthesis, maximum responses compared to COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundL-arginine are listed. |
|
COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundL-Arginine17 |
284 μM; [3.58 ± 0.08] |
COMPOUND LINKS Read more about this on ChemSpider Download mol file of compound7 |
77.4 μM; [4.12 ± 0.07]; (76 ± 8%) |
8 | 214 μM; [3.70 ± 0.12]; (114 ± 8%) |
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Fig. 4 (S,S)-trans_1 docked to homology models of hmGluR2 (upper) and hmGluR3 (lower). Non-conserved second shell residues in contact with an COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundarginine lining the distal end of the ligand binding pocket are noted. |
Footnotes |
† Electronic supplementary information (ESI) available: Experimental procedures and spectroscopic characterisation. See DOI: 10.1039/c1md00186h |
‡ These authors contributed equally. |
This journal is © The Royal Society of Chemistry 2011 |