Gayatri
Batra
ab,
Laura
Pille
a,
Benjamin E.
Arenas‡
a and
Melanie
Schnell
*ab
aDeutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany. E-mail: melanie.schnell@desy.de
bInstitute of Physical Chemistry, Christian-Albrechts-Universität zu Kiel, Max-Eyth-Str. 1, 24118 Kiel, Germany
First published on 12th July 2024
The recent astronomical observations of the simplest aromatic nitrile benzonitrile, c-C6H5CN, followed by a five-membered and a bicyclic CN-functionalized ring in TMC-1 have provided a significant impetus to the field for searches of cyclic complex organic molecules in space. One such example is 2,4,6-cycloheptatriene-1-carbonitrile, a seven-membered ring with a –CN group attached to the sp3-hybridized carbon atom. With a permanent electric dipole moment of 4.3 D, this molecule is an excellent candidate for laboratory rotational spectroscopy. In this study, experiments were performed in the 2–8 GHz, 18–26 GHz, and 75–110 GHz frequency ranges in a supersonic expansion setup and a room temperature flow cell setup. The measurements across the broad frequency range of 2–110 GHz have enabled the identification and assignment of the vibronic ground state, singly substituted rare-atom isotopologues, and vibrationally excited states. Here, we report the precise determination of the rotational constants, quartic centrifugal distortion constants, nitrogen nuclear quadrupole coupling constants, as well as molecular structure in its vibronic ground state. The comprehensive rotational spectroscopy study of this molecule, covering a large frequency range, forms the basis for its future astronomical detection and thus for extending the pool of detected complex cyclic molecules.
Among the vast array of molecular species, surpassing 300, identified in the interstellar medium or circumstellar shells,§¶ the majority of these detections were made via their rotational spectra. For direct detection via its rotational signature, a molecule must possess a permanent electric dipole moment. As a result, polar molecules, despite their potentially low abundances, serve as sensitive tracers of the molecular gases present in the ISM. This prerequisite of polarity explains the existing predominance in the detection of CN-containing molecules (>15% of the total detected molecules so far),¶ as they possess high values of electric dipole moments leading to intense rotational spectra which facilitate their astronomical search.
The organic chemistry on Earth is dominated by the presence of molecules containing five- and six-membered rings as building blocks of many biological compounds.3 However, it was only in the year 2018 that the first cyclic aromatic molecule, the CN-functionalized benzene ring, benzonitrile,4 was identified in the cold starless core TMC-1. This molecule was then subsequently detected in four other prestellar, and possibly protostellar, sources: Serpens 1A, Serpens 1B, Serpens 2, and MC27/L1521F,5 suggesting a high degree of chemical complexity in the early star formation regions. Shortly after, evidence was found for cyano-functionalized cyclopentadiene6 in TMC-1. The detection of the CN-functionalized hydrocarbons can act as a proxy for the unsubstituted molecules as most of the studied reactions of unsaturated hydrocarbons, like benzene, with a CN radical are found to be barrierless and exothermic in nature.7 The detection of the five-membered and six-membered rings with CN functionalization has evoked interest in investigating the seven-membered CN functionalized ring: 2,4,6-cycloheptatriene-1-carbonitrile (hereafter, CHT-1-CN). In this work, we conducted a thorough rotational spectroscopy study of CHT-1-CN at two different rotational temperatures to facilitate its detection in the cold as well as in warmer regions of the ISM.
In warm regions of the ISM, a considerable proportion of complex molecules reside in low-lying vibrationally excited states. The transitions arising from these vibrationally excited states are commonly referred to as weeds in radio astronomy data.8 These weeds can occupy many channels in a warm and dense astronomical dataset, and therefore their characterization is an important step in simplifying complex and confusion-limited spectra. Vibrationally excited states, together with isotopologues, constitute a large fraction of the many unidentified lines in the observational datasets, for example, the percentage of these unidentified lines can be as high as 70% in deep observations at Atacama Large Millimeter/submillimeter Array (ALMA) bands 3 and 6, covering 84–116 GHz and 211–275 GHz, respectively.9 The assignment of vibrationally excited states and isotopologues is also important for the completeness of the astronomical catalogs, especially in the millimeter-wave region. Moreover, isotopologues are important species not only from a spectroscopic but also from a structural point of view. The assignment of singly substituted isotopologues in the rotational spectrum provides the experimentally determined rotational constants, which then lead to the construction of a comprehensive structure of the molecule in the gas phase. For CHT-1-CN, elucidating structural information is of relevance as it is a seven-membered ring with six sp2- and one sp3-hybridized carbon atoms. The structures of cycloheptatrienes and their derivatives, investigated with vibrational and rotational spectroscopic techniques, have been a subject of discussion since the early 1960s.10–13 However, prior to this work, no spectroscopic data was available in the literature on CHT-1-CN.
In this manuscript, we present an extensive analysis of the rotational spectra of CHT-1-CN covering the 2–110 GHz frequency region (in parts of 2–8, 18–26, and 75–110 GHz) in two different experimental settings using the isolated, cold conditions of a supersonic expansion in the 2–26 GHz frequency range and a flow-cell experiment at elevated temperatures (∼323 K) in the 75–110 GHz frequency range. The broad frequency ranges probed and the different experimental conditions employed are of significant importance here, as not only do we analyze the vibronic ground state of the molecule but we also study vibrationally excited states. In addition, the determination of the rotational constants, quartic centrifugal distortion constants, and nuclear quadrupole coupling constants have allowed us to accurately predict the rotational transition frequencies for the ground state into the millimeter-wave region for facilitating astronomical searches.
The liquid sample of CHT-1-CN purchased from Sigma Aldrich (with a given chemical purity of >95%) was used without any further purification. The molecule was first measured in the range of 18–26 GHz using the K-band spectrometer, as for a molecule of this size, most intense transitions simulated with a rotational temperature of 1–3 K lie in the range of the K-band spectrometer. The measurement was extended to the low-frequency range (2–8 GHz) employing the COMPACT spectrometer to better resolve the nuclear hyperfine split transitions due to the presence of the 14N nucleus. For both measurements, the sample of CHT-1-CN was loaded into a modified pulsed nozzle (a modified Parker Series 9 valve equipped with an internal heatable reservoir with an orifice diameter of 1 mm) and heated to ∼311 K. With neon used as a carrier gas at 2.5 bar, the molecular vapor was supersonically expanded into the vacuum chamber. The supersonic expansion of the gas mixture into the vacuum chamber results in a rapid decrease of the rotational temperature, Trot, to the range of 1–3 K. In contrast to the spectra recorded in the low-frequency region, the measurement in the high-frequency region (75–110 GHz) was performed under flow-cell conditions. The liquid sample was heated to 323 K resulting in a constant vapor pressure of 2–3 mTorr (2.6–4 × 10−3 mbar) in the spectrometer chamber.
In total, 1 million FIDs in the range of 2–8 GHz, 2.2 million FIDs in the range of 18–26 GHz, and 1 million FIDs in the range of 75–110 GHz were co-added in the time domain, followed by the fast Fourier transformation into their respective frequency domains.
Rotational parameters | Conformer 1 | Conformer 2 | Tautomer 1 | Tautomer 2 |
---|---|---|---|---|
a A, B, and C are the rotational constants. b μ a /μb/μc are the electric dipole moment components. c Zero-point energy corrected relative energies. | ||||
A /MHz | 3581.7 | 2277.2 | 4304.9 | 2430.1 |
B/MHz | 1252.7 | 1682.6 | 1161.1 | 1733.8 |
C/MHz | 991.1 | 1538.8 | 996.7 | 1627.1 |
μ a /μb/μcb/D | 4.3/0.0/0.2 | 2.8/0.0/2.9 | 4.3/0.0/0.2 | 2.5/3.4/0.0 |
ΔEc/kJ mol−1 | 0.0 | 6.3 | 22.0 | 24.6 |
Anharmonic frequency calculations were also performed for the lowest energy conformer to aid the analysis of the rotational spectra of the vibrationally excited states. The program package Gaussian 0921 was used to perform structure optimization and anharmonic frequency calculations at the B3LYP-D3/aug-cc-pVTZ level of theory. In addition to the theoretical rotational constants corresponding to vibrationally ground and vibrationally excited states, the anharmonic frequency calculations also provided theoretical quartic centrifugal distortion constants, which are of great relevance for the assignment in the high-frequency region (75–110 GHz).
![]() | ||
Fig. 1 Molecular structures and principal inertia axes of the lowest energy conformers (A) CHT-1-CN-1 (top) and (B) CHT-1-CN-2 (bottom) in the ab plane (left) and in the ac plane (right). |
As expected, the rotational spectra recorded below 26 GHz (Fig. 2) show resolvable hyperfine splitting (HFS) and the pattern of the HFS observed for the a-type transitions can be found in Fig. S2 in the ESI.† The nuclear quadrupole coupling constants (NQCCs) obtained at the B3LYP-D3/aug-cc-pVTZ level of theory were used to simulate the HFS caused by the nuclear spin (I = 1) of the 14N nucleus. In the present work, ∼150 and ∼40 transitions with resolved HFS were assigned for CHT-1-CN-1 and CHT-1-CN-2, respectively.
The rotational spectrum in the W-band region displayed in Fig. 3 does not show a resolvable HFS as the HFS collapses with the increasing rotational quantum number, J. For such transitions, the experimentally measured frequencies were assigned to the corresponding pure rotational transitions. For CHT-1-CN-1, the majority of the transitions were a-type transitions due to the high dipole-moment component along the a-axis. In addition to this, some c-type transitions were also assigned but no b-type transitions could be observed due to a very low dipole-moment component along the b-axis. A global fit incorporating the rotational transitions from both low- and high-frequency regions was performed. For CHT-1-CN-2, both a-type and c-type transitions were assigned in 2–26 GHz due to the significant dipole moment components along the a- and c-axes, but no transitions for CHT-1-CN-2 could be assigned in the high-frequency region. This is due to a combination of factors, such as lower overall intensities observed in the flow cell experiment at 323 K, and higher relative energy of CHT-1-CN-2 (∼6 kJ mol−1) and therefore lower abundance (∼8%) compared to the lowest energy conformer CHT-1-CN-1. In total, our data set contains 1272 assigned transitions for CHT-1-CN-1 and 123 transitions for CHT-1-CN-2 in the vibronic ground state. The experimental and theoretical rotational parameters for the vibronic ground state of both conformers are given in Table 2, and the list of assigned transitions of both conformers can be found in Tables S3.1–S3.3 (ESI†). For CHT-1-CN-1, the line list consists of rotational transitions from 2–110 GHz, while for CHT-1-CN-2, the line list comprises of rotational transitions from 2–26 GHz. As for the case of CHT-1-CN-1, analyzing high-frequency data sets allows for the accurate determination of the centrifugal distortion constants, which are crucial for the astronomical community, as this allows one to compute reliable rest frequencies in the higher frequency region more precisely than predictions based on the rigid rotor models alone. In this work, the transition frequencies of CHT-1-CN-1 were predicted up to 150 GHz based on the fitted rotational parameters, with the use of the SPCAT program.22 For the vast majority of the predicted transitions, the uncertainties are well under 200 kHz. Besides the centrifugal distortion constants, the experimentally determined NQCCs, χaa and χbb–cc, are also important for interstellar searches, as the observation of the nuclear HFS can act as a further validation mechanism for interstellar detections. For example, the elucidation of the hyperfine splitting patterns of several interstellar molecules like cyanoallene23 and benzonitrile4 led to their conclusive identification in the ISM.
Rotational parameters | CHT-1-CN-1 | CHT-1-CN-2 | ||
---|---|---|---|---|
Experiment | Theory | Experiment | Theory | |
a A, B, and C are the rotational constants. b Δ J , ΔJK, ΔK, δJ, and δK are the quartic centrifugal distortion constants. The theoretical centrifugal distortion constants were estimated from the harmonic frequency calculation with a home-written script that incorporates all the equations required for the calculation of distortion constants.24 c χ aa , χbb, and χcc represent the diagonal elements of the 14N nuclear quadrupole coupling tensor. d Microwave root-mean-square deviation of the fit. e Maximum values of J and Ka assigned in the fit. f Parameters in square brackets were kept fixed to the corresponding theoretical value. | ||||
A /MHz | 3538.12661(62) | 3581.7 | 2232.1100(22) | 2277.2 |
B/MHz | 1251.39700(13) | 1252.7 | 1702.8285(16) | 1682.7 |
C/MHz | 990.61360(11) | 991.0 | 1573.6604(20) | 1538.8 |
Δ J /kHz | 0.055512(30) | 0.053 | 0.683(25) | 0.657 |
Δ JK /kHz | 0.20096(13) | 0.196 | −1.176(81) | −1.457 |
Δ K /kHz | 0.830(20) | 0.826 | 0.96(11) | 1.224 |
δ J /kHz | 0.006708(17) | 0.006 | 0.093(17) | −0.08 |
δ K /kHz | 0.27771(99) | 0.267 | [0.145]f | 0.145 |
χ aa /MHz | −4.251(8) | −4.7 | 0.141(23) | 0.09 |
χ bb–cc/MHz | 0.077(17) | 0.09 | 4.414(38) | 4.85 |
σ /kHz | 25.6 | 24.5 | ||
No. of lines | 1272 | 123 | ||
J/Kae | 54/38 | 5/7 |
The presence of a symmetry plane in CHT-1-CN-1 causes the effective natural abundance of the carbon atoms at equivalent positions with respect to the mirror plane, labeled as 13C(5), 13C(6), and 13C(7) (Fig. 4, panels C and D), to be 2.2% instead of 1.1%. Since the change in the mass of the carbon atoms at equivalent positions with respect to the mirror plane has the same effect on the mass distribution, the corresponding moments of inertia and hence the rotational constants are identical. The experimentally determined rotational parameters for all the observed isotopologues of CHT-1-CN-1 (Table S4, ESI†) along with the list of all the assigned transitions arising from the singly substituted 13C and 15N isotopologues can be found in Tables S5.1–S5.6 (ESI†). These experimentally obtained rotational constants were then utilized to determine the positions of each isotopically substituted atom with respect to the molecular center of mass by employing Kraitchman's equations.25 The comparison of the experimentally determined substitution structure (rs) and the theoretical equilibrium structure (re) optimized at the B3LYP-D3/aug-cc-pVTZ level of theory is shown in Fig. 4C and D. The bold spheres represent the experimentally determined atom positions (rs) and the partially transparent backbone represents the equilibrium geometry (re) of the molecule.
![]() | ||
Fig. 4 Molecular structures of (A) benzonitrile,26 (B) cycloheptatriene,27 (C) and (D) CHT-1-CN-1 (experimental structure determined as a part of the current study). The inner bold spheres represent the rs positions of the atoms, whereas the partially transparent backbone gives the theoretical re structure (B3LYP-D3/aug-cc-pVTZ level of theory). The bond lengths are given in panel (C) and the bond angles are given in panel (D). The bond distances and angles obtained by rs are included where available. The numbering has been arranged in a way to facilitate a more effective comparison among the three molecules. |
It is informative to compare the structure of CHT-1-CN-1 to the ones of related molecules like benzonitrile26 and cycloheptatriene (CHT).10,27Fig. 4 depicts the ring structures of these three molecules with their relevant bond lengths and bond angles shown in Table 3. For CHT, the values were taken from gas-phase electron diffraction data since rotational spectroscopy data on the structure determination of CHT is not available in the literature. The primary distinction in the structures of benzonitrile and CHT-1-CN-1 is the degree of saturation of the bonds in the ring, and this impacts the resulting bond lengths. The structural differences between CHT and CHT-1-CN-1 arise from the substitution of a hydrogen atom with a CN group at the C(1) position. The differences in the degree of saturation between the above-mentioned systems also affect the aromaticity of the molecules. For example, benzonitrile is an aromatic molecule while CHT and CHT-1-CN-1 are non-aromatic, due to the presence of an sp3-hybridized carbon atom at position 1. As a result, benzonitrile is a planar molecule, while CHT and CHT-1-CN-1 are bent in shape. The boat shape arrangement of CHT-1-CN-1 makes the angle at the sp3-hybridized carbon atom C(1) the smallest (106.9°) and the bond length associated with C(1) be the longest rC(1)–C(2) = 1.5201(20) Å.
CHT-1-CN-1a | CHTb![]() |
Benzonitrilea![]() |
||
---|---|---|---|---|
a Parameters determined via the rs method. b Parameters taken from an electron diffraction study of CHT in the gas phase. c Carbon atom of the cyano group. | ||||
Bond lengths (Å) | ||||
C(1)–C(2) | 1.5241(62) | 1.505(7) | C(1)–C(2) | 1.3876(5) |
C(2)–C(3) | 1.308(13) | 1.356(5) | C(2)–C(3) | 1.3956(4) |
C(3)–C(4) | 1.4510(36) | 1.446(7) | C(3)–C(4) | 1.3974(4) |
C(4)–C(5) | 1.3582(32) | 1.356(5) | Cc–N | 1.1581(2) |
C(1)–Cc | 1.4829(22) | |||
Cc–N | 1.1570(93) | |||
Bond angles (°) | ||||
C(1)–C(2)–C(3) | 120.4(6) | 121.8 | C(1)–C(2)–C(3) | 119.00(4) |
C(2)–C(3)–C(4) | 124.6(2) | 127.2 | C(2)–C(3)–C(4) | 120.06(3) |
C(3)–C(4)–C(5) | 125.5(2) | 119.8 | C(3)–C(4)–C(5) | 120.05(3) |
C(2)–C(1)–C(7) | 106.5(5) | C(2)–C(1)–C(6) | 121.82(5) | |
C(1)–Cc–N | 179.3(8) | C(1)–Cc–N |
The spectral assignment of the vibrationally excited states was facilitated by anharmonic frequency calculations performed at the B3LYP-D3/aug-cc-pVTZ level of theory, the corresponding vibrational motions are depicted in Fig. 5. The theoretical rotational constants obtained for each of the observed vibrationally excited states were shifted by the difference in the theoretical and experimental rotational constants obtained for the vibronic ground state at the same level of theory. The experimentally determined rotational constants and the number of assigned transitions for the four fundamental bands, as well as one overtone (2ν42) and one combination band (ν42 + ν41), are listed in Table S6 (ESI†) along with their derived rotational constants and anharmonic energies computed at the B3LYP-D3/aug-cc-pVTZ level of theory. Table S6 (ESI†) also lists the estimated Boltzmann population calculated using the anharmonic energies of the six vibrationally excited states. The line lists of rotational transitions corresponding to the vibrationally excited states are given in Tables S7.1–S7.6 (ESI†).
![]() | ||
Fig. 6 Distribution of rotational transitions of CHT-1-CN-1 for four of the standard temperatures implemented in the JPL database.29 The frequency simulation is made up to 500 GHz for the case of 2I + 1 = 1. Note that the intensity scale for the prediction at 9.375 K has been halved for clearer comparison with the predictions at higher temperatures. |
The experiment in the range of 75–110 GHz was performed at ∼323 K, therefore it is important to consider the vibrational partition function in addition to the rotational partition function. In Table 4, we list the rotational (Qrot) and vibrational (Qvib) partition functions of CHT-1-CN-1 calculated for the rotational quantum number J up to 75 and up to the frequency range of 150 GHz without considering the HFS due to 14N. The rotational partition functions were calculated across the standard temperatures (as implemented in the jet propulsion laboratory (JPL) database29) using the SPCAT/SPFIT program suite.30,31 The vibrational contributions were calculated through direct summation of all of the vibrational modes up to 500 cm−1. The total partition function (Qtot) of the molecule in the electronic ground state is the product of Qrot and Qvib, as listed in Table 4.
CHT-1-CN-1 | |||
---|---|---|---|
T/K | Q rot[2I + 1 = 1]a | Q vib | Q tot = Qrot × Qvib |
a I = 0 for 14N, ignoring the HFS. | |||
300 | 717![]() |
4.41 | 3![]() ![]() |
225 | 565![]() |
3.31 | 1![]() ![]() |
150 | 374![]() |
2.14 | 801![]() |
75 | 153![]() |
1.22 | 187![]() |
37.5 | 55![]() |
1.02 | 56![]() |
18.75 | 19![]() |
1.00 | 19![]() |
9.375 | 6943.87 | 1.00 | 6943.87 |
1.5 | 448.34 | 1.00 | 448.34 |
The analysis of the vibrationally excited states is an important task, as they could act as temperature probes in regions where the ground state species is detected. Moreover, it is useful for the simplification of complex astronomical datasets by eliminating lines from vibrationally excited states and isotopologues of already known molecules.
For the lowest energy conformer CHT-1-CN-1, the assignment comprises of exact rotational frequencies in the 2–8, 18–26, and 75–110 GHz frequency ranges, leading to the determination of rotational parameters up to quartic distortion constants along with the nuclear quadrupole coupling constants. The accurate determination of centrifugal distortion constants allowed us to compute reliable rest frequencies in the high-frequency region (up to 150 GHz). For the vast majority of predicted transition frequencies, the uncertainties are well under 200 kHz, which makes this a reliable study for conducting astronomical searches. Rotational and vibrational partition functions were also calculated for the variety of temperatures as listed in the JPL database.29 In addition to determining the gas-phase structure of CHT-1-CN-1 in the vibronic ground state, its structure is also compared to other similar molecules like CHT and benzonitrile. The aromatic nature of benzonitrile explains the decrease in bond lengths in the ring structure as compared to those in CHT and CHT-1-CN-1, especially the ones including the C(1) carbon atom due to its sp3 hybridization.
The astronomical detections of cyano-substituted five-membered and six-membered rings, cyanocyclopentadiene6 and benzonitrile,4 respectively, make this cyano-substituted seven-membered ring (CHT-1-CN-1) a potential candidate to be detected in the ISM. Moreover, the electric dipole moment of CHT-1-CN-1 (4.3 D) makes it a favorable molecule to be searched for using radio astronomy. The astronomical search for CHT-1-CN-1 is suggested in TMC-1, where other cyclic molecules have been detected recently like benzonitrile,4o-benzyne,32 cyclopentadiene and derivatives,33,34 and indene.33,35,36 The comprehensive study of complex cyclic molecules like CHT-1-CN-1 opens up the possibility of investigating even more complex or cyclic molecules while testing the limits of radio astronomy.
Footnotes |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4cp01899k |
‡ Present address: EaStCHEM School of Chemistry, University of Edinburgh, David Brewster Road, EH9 3FJ Edinburgh, UK. |
§ https://www.astrochymist.org/. |
¶ https://cdms.astro.uni-koeln.de/classic/molecules. |
|| https://www.wavefun.com. |
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