Issue 17, 2023

The relevance of short peptides for an understanding of unfolded and intrinsically disordered proteins

Abstract

Over the last thirty years the unfolded state of proteins has attracted considerable interest owing to the discovery of intrinsically disordered proteins which perform a plethora of functions despite resembling unfolded proteins to a significant extent. Research on both, unfolded and disordered proteins has revealed that their conformational properties can deviate locally from random coil behavior. In this context results from work on short oligopeptides suggest that individual amino acid residues sample the sterically allowed fraction of the Ramachandran plot to a different extent. Alanine has been found to exhibit a peculiarity in that it has a very high propensity for adopting polyproline II like conformations. This Perspectives article reviews work on short peptides aimed at exploring the Ramachandran distributions of amino acid residues in different contexts with experimental and computational means. Based on the thus provided overview the article discussed to what extent short peptides can serve as tools for exploring unfolded and disordered proteins and as benchmarks for the development of a molecular dynamics force field.

Graphical abstract: The relevance of short peptides for an understanding of unfolded and intrinsically disordered proteins

Article information

Article type
Perspective
Submitted
30 Jan 2023
Accepted
18 Eph 2023
First published
19 Eph 2023

Phys. Chem. Chem. Phys., 2023,25, 11908-11933

Author version available

The relevance of short peptides for an understanding of unfolded and intrinsically disordered proteins

R. Schweitzer-Stenner, Phys. Chem. Chem. Phys., 2023, 25, 11908 DOI: 10.1039/D3CP00483J

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