Takenori Dairaku, Kyoko Furuita, Hajime Sato, Jakub Šebera, Katsuyuki Nakashima, Jiro Kondo, Daichi Yamanaka, Yoshinori Kondo, Itaru Okamoto, Akira Ono, Vladimír Sychrovský, Chojiro Kojima and Yoshiyuki Tanaka

Chemistry A European J, 2016, 22, 13028
DOI: 10.1002/chem.201603048

Stimuliresponsive DNA‐funktionalisierte Nano‐ und Mikrocontainer zur schaltbaren und kontrollierten Freisetzung

Chun‐Hua Lu and Itamar Willner

Angewandte Chemie, 2015, 127, 12380
DOI: 10.1002/ange.201503054

Easy Design of Colorimetric Logic Gates Based on Nonnatural Base Pairing and Controlled Assembly of Gold Nanoparticles

Li Zhang, Zhong-Xia Wang, Ru-Ping Liang and Jian-Ding Qiu

Langmuir, 2013, 29, 8929
DOI: 10.1021/la401887b

Highly sensitive protein detection based on DNAzyme cycling activated surface assembly of peptide decorated nanoparticles

Weiwei Li, Hao Li, Shuai Wu, Chang Feng and Genxi Li

Electrochemistry Communications, 2016, 71, 84
DOI: 10.1016/j.elecom.2016.08.011

Detection of Metal Ions (Cu2+, Hg2+) and Cocaine by Using Ligation DNAzyme Machinery

Fuan Wang, Ron Orbach and Itamar Willner

Chemistry A European J, 2012, 18, 16030
DOI: 10.1002/chem.201201479

DNA Hydrogel Assemblies: Bridging Synthesis Principles to Biomedical Applications

Mohammad‐Ali Shahbazi, Tomás Bauleth‐Ramos and Hélder A. Santos

Advanced Therapeutics, 2018, 1
DOI: 10.1002/adtp.201800042

Visual Detection of Stem-Loop Primer Amplification (SPA) Products without Denaturation Using Peroxidase-like DNA Machines (PxDM)

Yulia I. Maltzeva, Daria A. Gorbenko, Ekaterina V. Nikitina, Maria S. Rubel and Dmitry M. Kolpashchikov

IJMS, 2023, 24, 7812
DOI: 10.3390/ijms24097812

From Cascaded Catalytic Nucleic Acids to Enzyme–DNA Nanostructures: Controlling Reactivity, Sensing, Logic Operations, and Assembly of Complex Structures

Fuan Wang, Chun-Hua Lu and Itamar Willner

Chem. Rev., 2014, 114, 2881
DOI: 10.1021/cr400354z

A Shape Memory Acrylamide/DNA Hydrogel Exhibiting Switchable Dual pH‐Responsiveness

Yuwei Hu, Chun‐Hua Lu, Weiwei Guo, Miguel Angel Aleman‐Garcia, Jiangtao Ren and Itamar Willner

Adv Funct Materials, 2015, 25, 6867
DOI: 10.1002/adfm.201503134

A resonance Rayleigh scattering sensor for detection of Pb 2+ ions via cleavage-induced G-wire formation

Wang Ren, Ying Zhang, Yu Zhu Fan, Jiang Xue Dong, Nian Bing Li and Hong Qun Luo

Journal of Hazardous Materials, 2017, 336, 195
DOI: 10.1016/j.jhazmat.2017.04.039

Integration of Switchable DNA-Based Hydrogels with Surfaces by the Hybridization Chain Reaction

Jason S. Kahn, Alexander Trifonov, Alessandro Cecconello, Weiwei Guo, Chunhai Fan and Itamar Willner

Nano Lett., 2015, 15, 7773
DOI: 10.1021/acs.nanolett.5b04101

Photon-Regulated DNA-Enzymatic Nanostructures by Molecular Assembly

Mingxu You, Ruo-Wen Wang, Xiaobing Zhang, Yan Chen, Kelong Wang, Lu Peng and Weihong Tan

ACS Nano, 2011, 5, 10090
DOI: 10.1021/nn204007y

Metal‐Ion‐Triggered Exonuclease III Activity for the Construction of DNA Colorimetric Logic Gates

Wan Gao, Li Zhang, Ru‐Ping Liang and Jian‐Ding Qiu

Chemistry A European J, 2015, 21, 15272
DOI: 10.1002/chem.201502122

Supramolecular Protein Assemblies Based on DNA Templates

Chunxi Hou, Shuwen Guan, Ruidi Wang, Wei Zhang, Fanchao Meng, Linlu Zhao, Jiayun Xu and Junqiu Liu

J. Phys. Chem. Lett., 2017, 8, 3970
DOI: 10.1021/acs.jpclett.7b01564

DNA‐Schalter: Grundlagen und Anwendungen

Fuan Wang, Xiaoqing Liu and Itamar Willner

Angewandte Chemie, 2015, 127, 1112
DOI: 10.1002/ange.201404652

Oligonucleotide‐Based Luminescent Detection of Metal Ions

Dik‐Lung Ma, Daniel Shiu‐Hin Chan, Bradley Yat‐Wah Man and Chung‐Hang Leung

Chemistry An Asian Journal, 2011, 6, 986
DOI: 10.1002/asia.201000870

1,3,9‐Triaza‐2‐oxophenoxazine: An Artificial Nucleobase Forming Highly Stable Self‐Base Pairs with Three AgI Ions in a Duplex

Akane Fujii, Osamu Nakagawa, Yuki Kishimoto, Takumi Okuda, Yusuke Nakatsuji, Natsumi Nozaki, Yuuya Kasahara and Satoshi Obika

Chemistry A European J, 2019, 25, 7443
DOI: 10.1002/chem.201900373

Isothermal Amplification of Nucleic Acids

Yongxi Zhao, Feng Chen, Qian Li, Lihua Wang and Chunhai Fan

Chem. Rev., 2015, 115, 12491
DOI: 10.1021/acs.chemrev.5b00428

Metalloporphyrin/G-quadruplexes: From basic properties to practical applications

Eyal Golub, Chun-Hua Lu and Itamar Willner

J. Porphyrins Phthalocyanines, 2015, 19, 65
DOI: 10.1142/S1088424615300025

DNA Colorimetric Logic Gates Based on Triplex–Helix Molecular Switch

Wan Gao, Li Zhang, Yun-Mei Zhang, Ru-Ping Liang and Jian-Ding Qiu

J. Phys. Chem. C, 2014, 118, 14410
DOI: 10.1021/jp503608t

Dissipative Organization of DNA Oligomers for Transient Catalytic Function

Jie Deng, Wei Liu, Mo Sun and Andreas Walther

Angewandte Chemie, 2022, 134
DOI: 10.1002/ange.202113477

Single–Molecule Study of DNAzyme Reveals Its Intrinsic Conformational Dynamics

Yiming Zhang, Zongzhou Ji, Xin Wang, Yi Cao and Hai Pan

IJMS, 2023, 24, 1212
DOI: 10.3390/ijms24021212

Fluorescence detection of Pb2+ based on the DNA sequence functionalized CdS quantum dots

Siyu Liu, Weidan Na, Shu Pang and Xingguang Su

Biosensors and Bioelectronics, 2014, 58, 17
DOI: 10.1016/j.bios.2014.02.013

DNA Switches: From Principles to Applications

Fuan Wang, Xiaoqing Liu and Itamar Willner

Angew Chem Int Ed, 2015, 54, 1098
DOI: 10.1002/anie.201404652

High‐Resolution Crystal Structure of a Silver(I)–RNA Hybrid Duplex Containing Watson–Crick‐like CSilver(I)C Metallo‐Base Pairs

Jiro Kondo, Yoshinari Tada, Takenori Dairaku, Hisao Saneyoshi, Itaru Okamoto, Yoshiyuki Tanaka and Akira Ono

Angewandte Chemie, 2015, 127, 13521
DOI: 10.1002/ange.201507894

Smart and Functionalized Development of Nucleic Acid‐Based Hydrogels: Assembly Strategies, Recent Advances, and Challenges

Yangzi Zhang, Longjiao Zhu, Jingjing Tian, Liye Zhu, Xuan Ma, Xiaoyun He, Kunlun Huang, Fazheng Ren and Wentao Xu

Advanced Science, 2021, 8
DOI: 10.1002/advs.202100216

Ion‐Responsive Hemin–G‐Quadruplexes for Switchable DNAzyme and Enzyme Functions

Miguel Angel Aleman‐Garcia, Ron Orbach and Itamar Willner

Chemistry A European J, 2014, 20, 5619
DOI: 10.1002/chem.201304702

Nucleic acid-based fluorescent sensor systems: a review

Aya Shibata, Sayuri L. Higashi and Masato Ikeda

Polym J, 2022, 54, 751
DOI: 10.1038/s41428-022-00623-1

Crystallographic Structure of Novel Types of AgI‐Mediated Base Pairs in Non‐canonical DNA Duplex Containing 2′‐O,4′‐C‐Methylene Bridged Nucleic Acids

Osamu Nakagawa, Hiroshi Aoyama, Akane Fujii, Yuki Kishimoto and Satoshi Obika

Chemistry A European J, 2021, 27, 3842
DOI: 10.1002/chem.202004819

DNA Architectonics: towards the Next Generation of Bio‐inspired Materials

Eugen Stulz

Chemistry A European J, 2012, 18, 4456
DOI: 10.1002/chem.201102908

Multitriggered Shape-Memory Acrylamide–DNA Hydrogels

Chun-Hua Lu, Weiwei Guo, Yuwei Hu, Xiu-Juan Qi and Itamar Willner

J. Am. Chem. Soc., 2015, 137, 15723
DOI: 10.1021/jacs.5b06510

Metal-Dependent DNA Base Pairing of 5-Carboxyuracil with Itself and All Four Canonical Nucleobases

Yusuke Takezawa, Akira Suzuki, Manabu Nakaya, Kotaro Nishiyama and Mitsuhiko Shionoya

J. Am. Chem. Soc., 2020, 142, 21640
DOI: 10.1021/jacs.0c11437

Signal-amplification detection of small molecules by use of Mg2+- dependent DNAzyme

Zhijun Guo, Jiahai Wang and Erkang Wang

Anal Bioanal Chem, 2013, 405, 4051
DOI: 10.1007/s00216-013-6788-2

Catalytic Nucleic Acids for Bioanalysis

Xiuhai Mao, Qian Li, Xiaolei Zuo and Chunhai Fan

ACS Appl. Bio Mater., 2020, 3, 2674
DOI: 10.1021/acsabm.9b00928

Colorimetric Logic Gates Based on Ion-Dependent DNAzymes

Li Zhang, Yun-Mei Zhang, Ru-Ping Liang and Jian-Ding Qiu

J. Phys. Chem. C, 2013, 117, 12352
DOI: 10.1021/jp4027892

Orthogonal Demethylase-Activated Deoxyribozyme for Intracellular Imaging and Gene Regulation

Qing Wang, Kaiyue Tan, Hong Wang, Jinhua Shang, Yeqing Wan, Xiaoqing Liu, Xiaocheng Weng and Fuan Wang

J. Am. Chem. Soc., 2021, 143, 6895
DOI: 10.1021/jacs.1c00570

A FRET based aptasensor coupled with non-enzymatic signal amplification for mercury (II) ion detection

Ketsarin Chu-mong, Chongdee Thammakhet, Panote Thavarungkul, Proespichaya Kanatharana and Chittanon Buranachai

Talanta, 2016, 155, 305
DOI: 10.1016/j.talanta.2016.05.016

DNA-only Cascade: A Universal Tool for Signal Amplification, Enhancing the Detection of Target Analytes

Simon M. Bone, Nicole J. Hasick, Nicole E. Lima, Simon M. Erskine, Elisa Mokany and Alison V. Todd

Anal. Chem., 2014, 86, 9106
DOI: 10.1021/ac501811r

Stimuli-Responsive DNA-Based Hydrogels: From Basic Principles to Applications

Jason S. Kahn, Yuwei Hu and Itamar Willner

Acc. Chem. Res., 2017, 50, 680
DOI: 10.1021/acs.accounts.6b00542

DNA-Based Scaffolds for Sensing Applications

Simona Ranallo, Alessandro Porchetta and Francesco Ricci

Anal. Chem., 2019, 91, 44
DOI: 10.1021/acs.analchem.8b05009

Integrating single-molecule FRET and biomolecular simulations to study diverse interactions between nucleic acids and proteins

Dominika Gruszka, Joshua C. Sanders and Erik D. Holmstrom

Essays in Biochemistry, 2021, 65, 37
DOI: 10.1042/EBC20200022

Allosteric Regulation of DNAzyme Activities through Intrastrand Transformation Induced by Cu(II)-Mediated Artificial Base Pairing

Takahiro Nakama, Yusuke Takezawa, Daisuke Sasaki and Mitsuhiko Shionoya

J. Am. Chem. Soc., 2020, 142, 10153
DOI: 10.1021/jacs.0c03129

Sharp Switching of DNAzyme Activity through the Formation of a CuII‐Mediated Carboxyimidazole Base Pair

Yusuke Takezawa, Lingyun Hu, Takahiro Nakama and Mitsuhiko Shionoya

Angew Chem Int Ed, 2020, 59, 21488
DOI: 10.1002/anie.202009579

Ultrasensitive, high temperature and ionic strength variation-tolerant Cu2+ fluorescent sensor based on reconstructed Cu2+-dependent DNAzyme/substratecomplex

Hui Li, Xiao-Xi Huang, De-Ming Kong, Han-Xi Shen and Yue Liu

Biosensors and Bioelectronics, 2013, 42, 225
DOI: 10.1016/j.bios.2012.10.070

Peroxidase-mimicking DNAzymes for biosensing applications: A review

Joanna Kosman and Bernard Juskowiak

Analytica Chimica Acta, 2011, 707, 7
DOI: 10.1016/j.aca.2011.08.050

Stimuli‐Responsive DNA‐Functionalized Nano‐/Microcontainers for Switchable and Controlled Release

Chun‐Hua Lu and Itamar Willner

Angew Chem Int Ed, 2015, 54, 12212
DOI: 10.1002/anie.201503054

Advancements and Prospects in DNA-Based Bioanalytical Technology for Environmental Toxicant Detection

Siqian Liu, Benfeng Xu, Chongyang Li, Yanlin Ren, Hao Gan, Shi Kuang, Chunyang Lei and Zhou Nie

JACS Au, 2025, 5, 2443
DOI: 10.1021/jacsau.5c00398