Jekaterina Erenpreisa, Alessandro Giuliani, Kenichi Yoshikawa, Martin Falk, Georg Hildenbrand, Kristine Salmina, Talivaldis Freivalds, Ninel Vainshelbaum, Jonas Weidner, Aaron Sievers, Götz Pilarczyk and Michael Hausmann

IJMS, 2023, 24, 2658
DOI: 10.3390/ijms24032658

Structurization Of Counterions Around DNA Double Helix: A Molecular Dynamics Study

O.O. Liubysh, A.V. Vlasiuk and S.M. Perepelytsya

Ukr. J. Phys., 2015, 60, 433
DOI: 10.15407/ujpe60.05.0433

Use of Ionic Liquids-like Surfactants for the Generation of Unilamellar Vesicles with Potential Applications in Biomedicine

Cristian M. O. Lépori, N. Mariano Correa, Juana J. Silber, R. Darío Falcone, Manuel López-López and M. Luisa Moyá

Langmuir, 2019, 35, 13332
DOI: 10.1021/acs.langmuir.9b01197

Plasmid DNA Undergoes Two Compaction Regimes under Macromolecular Crowding

Suparna Khatun, Anurag Singh, Kumari Shikha, Agneyo Ganguly and Amar Nath Gupta

ACS Macro Lett., 2022, 11, 186
DOI: 10.1021/acsmacrolett.1c00593

Effect of Torsion on Cisplatin-Induced DNA Condensation

Bo Li, Chao Ji, Xi-Ming Lu, Yu-Ru Liu, Wei Li, Shuo-Xing Dou, Hui Li and Peng-Ye Wang

Chinese Phys. Lett., 2018, 35, 118701
DOI: 10.1088/0256-307X/35/11/118701

Shape-Tailored Colloidal Molecules Obtained by Self-Assembly of Model Gold Nanoparticles with Flexible Polyelectrolyte

Li Shi, Eric Buhler, François Boué and Florent Carn

Langmuir, 2015, 31, 5731
DOI: 10.1021/acs.langmuir.5b00854

Construction of rolling circle amplification products-based pure nucleic acid nanostructures for biomedical applications

Congcong Li, Yin Wang, Pei-Feng Li and Qinrui Fu

Acta Biomaterialia, 2023, 160, 1
DOI: 10.1016/j.actbio.2023.02.005

Switching Multivalent DNA Complexation using Metal‐Controlled Cationic Supramolecular Self‐Assemblies

Wojciech Drożdż, Yannick Bessin, Virginie Gervais, Xiao‐Yu Cao, Jean‐Marie Lehn, Artur R. Stefankiewicz and Sébastien Ulrich

Chemistry A European J, 2018, 24, 1518
DOI: 10.1002/chem.201705630

Fabrication and Biomedical Applications of “Polymer-Like” Nucleic Acids Enzymatically Produced by Rolling Circle Amplification

Jing Li, Li Lin, Jiantao Yu, Shiyao Zhai, Guoyuan Liu and Leilei Tian

ACS Appl. Bio Mater., 2019, 2, 4106
DOI: 10.1021/acsabm.9b00622

From Interaction to Function in DNA‐Templated Supramolecular Self‐Assemblies

Mathieu Surin and Sébastien Ulrich

ChemistryOpen, 2020, 9, 480
DOI: 10.1002/open.202000013

Reversible Supra‐Folding of User‐Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates

Koyomi Nakazawa, Farah El Fakih, Vincent Jallet, Caroline Rossi‐Gendron, Marina Mariconti, Léa Chocron, Mafumi Hishida, Kazuya Saito, Mathieu Morel, Sergii Rudiuk and Damien Baigl

Angew Chem Int Ed, 2021, 60, 15214
DOI: 10.1002/anie.202101909

Influence of shear on globule formation in dilute solutions of flexible polymers

Rangarajan Radhakrishnan and Patrick T. Underhill

The Journal of Chemical Physics, 2015, 142
DOI: 10.1063/1.4917483

Promoting DNA loading on magnetic nanoparticles using a DNA condensation strategy

Zhi Shan, Youjun Jiang, Mengyu Guo, J. Craig Bennett, Xianghai Li, Hefeng Tian, Ken Oakes, Xu Zhang, Yi Zhou, Qianming Huang and Huaping Chen

Colloids and Surfaces B: Biointerfaces, 2015, 125, 247
DOI: 10.1016/j.colsurfb.2014.10.036

Protamine-Controlled Reversible DNA Packaging: A Molecular Glue

Arnab Mukherjee, Ambroise de Izarra, Jeril Degrouard, Enrick Olive, Prabal K. Maiti, Yun Hee Jang and Yves Lansac

ACS Nano, 2021, 15, 13094
DOI: 10.1021/acsnano.1c02337

Modification-Free Photocontrol of β-Lactam Conversion with Spatiotemporal Resolution

Anna Venancio-Marques, Yan-Jun Liu, Antoine Diguet, Thomas di Maio, Arnaud Gautier and Damien Baigl

ACS Synth. Biol., 2012, 1, 526
DOI: 10.1021/sb300010a

Divalent cation shrinks DNA but inhibits its compaction with trivalent cation

Chika Tongu, Takahiro Kenmotsu, Yuko Yoshikawa, Anatoly Zinchenko, Ning Chen and Kenichi Yoshikawa

The Journal of Chemical Physics, 2016, 144
DOI: 10.1063/1.4950749

Naturally occurring branched-chain polyamines induce a crosslinked meshwork structure in a giant DNA

Akira Muramatsu, Yuta Shimizu, Yuko Yoshikawa, Wakao Fukuda, Naoki Umezawa, Yuhei Horai, Tsunehiko Higuchi, Shinsuke Fujiwara, Tadayuki Imanaka and Kenichi Yoshikawa

The Journal of Chemical Physics, 2016, 145
DOI: 10.1063/1.4972066

Enhancement of DNA compaction by negatively charged nanoparticles: Effect of nanoparticle size and surfactant chain length

Sergii Rudiuk, Kenichi Yoshikawa and Damien Baigl

Journal of Colloid and Interface Science, 2012, 368, 372
DOI: 10.1016/j.jcis.2011.10.033

Supramolecular Systems Based on Novel Mono‐ and Dicationic Pyrimidinic Amphiphiles and Oligonucleotides: A Self‐Organization and Complexation Study

Lucia Zakharova, Mikhail Voronin, Vyacheslav Semenov, Dinar Gabdrakhmanov, Victor Syakaev, Yuri Gogolev, Rashit Giniyatullin, Svetlana Lukashenko, Vladimir Reznik, Shamil Latypov, Alexander Konovalov and Yuri Zuev

ChemPhysChem, 2012, 13, 788
DOI: 10.1002/cphc.201100888

Deciphering the molecular mechanisms of BPTF interactions with nucleosomes via molecular simulations

Ryan Hebert and Jeff Wereszczynski

Biophysical Journal, 2025, 124, 2655
DOI: 10.1016/j.bpj.2025.06.042

Anomalous long- and short-scale behavior of DNA conformation on a highly charged monomolecular film at different ionic strength

Evgeniy V. Dubrovin, Nikolay A. Barinov and Dmitry V. Klinov

International Journal of Biological Macromolecules, 2025, 319, 145438
DOI: 10.1016/j.ijbiomac.2025.145438

riDOM, a Cell-Penetrating Peptide. Interaction with DNA and Heparan Sulfate

Gabriela Québatte, Eric Kitas and Joachim Seelig

J. Phys. Chem. B, 2013, 117, 10807
DOI: 10.1021/jp404979y

Controlled compaction and decompaction of DNA by zwitterionic surfactants

Lei Feng, Lu Xu, Jingcheng Hao and Shuli Dong

Colloids and Surfaces A: Physicochemical and Engineering Aspects, 2016, 501, 65
DOI: 10.1016/j.colsurfa.2016.04.052

Role of Gemini Surfactants with Variable Spacers and SiO2 Nanoparticles in ct-DNA Compaction and Applications toward In Vitro/In Vivo Gene Delivery

Sayantan Halder, Milan Paul, Shalini Dyagala, Rishika Aggrawal, Vinod K. Aswal, Swati Biswas and Subit K. Saha

ACS Appl. Bio Mater., 2023, 6, 2795
DOI: 10.1021/acsabm.3c00256

Opposite effect of polyamines on In vitro gene expression: Enhancement at low concentrations but inhibition at high concentrations

Ai Kanemura, Yuko Yoshikawa, Wakao Fukuda, Kanta Tsumoto, Takahiro Kenmotsu, Kenichi Yoshikawa and William M. Shafer

PLoS ONE, 2018, 13, e0193595
DOI: 10.1371/journal.pone.0193595

Interaction of photosensitive surfactant with DNA and poly acrylic acid

Yuriy Zakrevskyy, Piotr Cywinski, Magdalena Cywinska, Jens Paasche, Nino Lomadze, Oliver Reich, Hans-Gerd Löhmannsröben and Svetlana Santer

The Journal of Chemical Physics, 2014, 140
DOI: 10.1063/1.4862679

DNA Condensation Induced by a Star-Shaped Hexameric Cationic Surfactant

Yaxun Fan, Hua Wang, Chengqian He, Fulin Qiao, Shu Wang and Yilin Wang

ACS Appl. Mater. Interfaces, 2017, 9, 23333
DOI: 10.1021/acsami.7b04317

Protective effect of ascorbic acid against double-strand breaks in giant DNA: Marked differences among the damage induced by photo-irradiation, gamma-rays and ultrasound

Yue Ma, Naoki Ogawa, Yuko Yoshikawa, Toshiaki Mori, Tadayuki Imanaka, Yoshiaki Watanabe and Kenichi Yoshikawa

Chemical Physics Letters, 2015, 638, 205
DOI: 10.1016/j.cplett.2015.08.054

Kinetic Control in Assembly of Plasmid DNA/Polycation Complex Nanoparticles

Yizong Hu, Zhiyu He, Yue Hao, Like Gong, Marion Pang, Gregory P. Howard, Hye-Hyun Ahn, Mary Brummet, Kuntao Chen, Heng-wen Liu, Xiyu Ke, Jinchang Zhu, Caleb F. Anderson, Honggang Cui, Christopher G. Ullman, Christine A. Carrington, Martin G. Pomper, Jung-Hee Seo, Rajat Mittal, Il Minn and Hai-Quan Mao

ACS Nano, 2019, 13, 10161
DOI: 10.1021/acsnano.9b03334

Enhanced Gene Expression Promoted by Hybrid Magnetic/Cationic Block Copolymer Micelles

E. Haladjova, S. Rangelov, Ch. B. Tsvetanov, V. Posheva, E. Peycheva, V. Maximova, D. Momekova, G. Mountrichas, S. Pispas and A. Bakandritsos

Langmuir, 2014, 30, 8193
DOI: 10.1021/la501402q

Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics

Jessica A. Nash, Abhishek Singh, Nan K. Li and Yaroslava G. Yingling

ACS Nano, 2015, 9, 12374
DOI: 10.1021/acsnano.5b05684

Cationic Cyanostilbene-Induced B-Z DNA Transition in Calf-Thymus DNA: Modulation of FRET in DNA Co-Assemblies

Rohit Kumar, Shubhra Kanti Bhaumik, Antara De and Supratim Banerjee

J. Phys. Chem. B, 2025, 129, 7511
DOI: 10.1021/acs.jpcb.5c03179

Effect of Ionic Ordering in Conductivity Experiments of DNA Aqueous Solutions

O.O. Liubysh, O.M. Alekseev, S.Yu. Tkachov and S.M. Perepelytsya

Ukr. J. Phys., 2014, 59, 479
DOI: 10.15407/ujpe59.05.0479

Molecular dynamics simulation of complexation between plasmid DNA and cationic peptides

Kousuke Tsuchiya, Joan Gimenez-Dejoz and Keiji Numata

Polym J, 2023, 55, 1109
DOI: 10.1038/s41428-023-00803-7

Studying compaction-decompaction of DNA molecules induced by surfactants

Xiaoyan Li, Dan Sun, Yanyan Chen, Kaige Wang, Qingli He and Guiren Wang

Biochemical and Biophysical Research Communications, 2018, 495, 2559
DOI: 10.1016/j.bbrc.2017.12.151

Conformational and phase transitions in DNA—photosensitive surfactant solutions: Experiment and modeling

N. Kasyanenko, L. Lysyakova, R. Ramazanov, A. Nesterenko, I. Yaroshevich, E. Titov, G. Alexeev, A. Lezov and I. Unksov

Biopolymers, 2015, 103, 109
DOI: 10.1002/bip.22575

Genomic-Thermodynamic Phase Synchronization: Maxwell’s Demon-like Regulation of Cell Fate Transition

Masa Tsuchiya, Kenichi Yoshikawa and Alessandro Giuliani

IJMS, 2025, 26, 4911
DOI: 10.3390/ijms26104911

Local rigidification and possible coacervation of the Escherichia coli DNA by cationic nylon-3 polymers

Yanyu Zhu, Lei Liu, Mainak Mustafi, Leslie A. Rank, Samuel H. Gellman and James C. Weisshaar

Biophysical Journal, 2021, 120, 5243
DOI: 10.1016/j.bpj.2021.10.037

Photosensitive Polyamines for High-Performance Photocontrol of DNA Higher-Order Structure

Anna Venancio-Marques, Anna Bergen, Caroline Rossi-Gendron, Sergii Rudiuk and Damien Baigl

ACS Nano, 2014, 8, 3654
DOI: 10.1021/nn500266b

Compaction, Relaxation, and Linearization of Megadalton-Sized DNA Plasmids: DNA Structures Probed by CD-MS

Lohra M. Miller, Luke Hawkins and Martin F. Jarrold

J. Am. Soc. Mass Spectrom., 2024, 35, 1969
DOI: 10.1021/jasms.4c00222

DNA relaxation dynamics in crowded environments: Influence of PEG molecular weight and viscosity

Yunosuke Fuji, Yota Nojiri, Yuuta Moriyama and Toshiyuki Mitsui

The Journal of Chemical Physics, 2025, 162
DOI: 10.1063/5.0257786

DNA Condensation Triggered by the Synergistic Self-Assembly of Tetraphenylethylene-Viologen Aggregates and CT-DNA

Sajena Kanangat Saraswathi, Varsha Karunakaran, Kaustabh Kumar Maiti and Joshy Joseph

Front. Chem., 2021, 9
DOI: 10.3389/fchem.2021.716771

Fe-CP-based Catalytic Oxidation and Dissipative Self-Assembly of a Ferrocenyl Surfactant Applied in DNA Capture and Release

Ting Liu, Liwei Zhu, Chencan Li, Yang Yu, Zhuo Zhang, Huizhong Liu, Ling Wang and Yawen Li

ACS Omega, 2024, 9, 23772
DOI: 10.1021/acsomega.4c01715

Cooperative DNA Compaction by Ternary Supramolecular Complex with Cucurbituril/Cyclodextrin Pair

Xu-Jie Zhang, Ying-Ming Zhang, Ze Wang, Yong Chen and Yu Liu

ChemistrySelect, 2016, 1, 685
DOI: 10.1002/slct.201600066

Complexation Preferences of Dynamic Constitutional Frameworks as Adaptive Gene Vectors

Dan‐Dan Su, Virginie Gervais, Sébastien Ulrich and Mihail Barboiu

Chemistry A European J, 2023, 29
DOI: 10.1002/chem.202203062

Photosensitive Peptidomimetic for Light-Controlled, Reversible DNA Compaction

Selina Schimka, Svetlana Santer, Nina M. Mujkić-Ninnemann, David Bléger, Laura Hartmann, Marko Wehle, Reinhard Lipowsky and Mark Santer

Biomacromolecules, 2016, 17, 1959
DOI: 10.1021/acs.biomac.6b00052

Decondensation of cationic gemini surfactant-induced DNA aggregates using triblock copolymer (PEO)20–(PPO)70–(PEO)20

Yunfei He, Shouhong Xu, Di Sun, Yazhuo Shang, Xiaofang Zhao and Honglai Liu

Colloid Polym Sci, 2013, 291, 2139
DOI: 10.1007/s00396-013-2954-5

Bridging β‐Cyclodextrin Prevents Self‐Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids

Pierre Evenou, Julien Rossignol, Gaëlle Pembouong, Adélie Gothland, Dmitri Colesnic, Renaud Barbeyron, Sergii Rudiuk, Anne‐Geneviève Marcelin, Mickaël Ménand, Damien Baigl, Vincent Calvez, Laurent Bouteiller and Matthieu Sollogoub

Angew Chem Int Ed, 2018, 57, 7753
DOI: 10.1002/anie.201802550

DNA conformational behavior and compaction in biomimetic systems: Toward better understanding of DNA packaging in cell

Anatoly Zinchenko

Advances in Colloid and Interface Science, 2016, 232, 70
DOI: 10.1016/j.cis.2016.02.005

Photochromic switching of the DNA helicity induced by azobenzene derivatives

Marco Deiana, Ziemowit Pokladek, Joanna Olesiak-Banska, Piotr Młynarz, Marek Samoc and Katarzyna Matczyszyn

Sci Rep, 2016, 6
DOI: 10.1038/srep28605

The role of hydrophobic alkyl chains in the physicochemical properties of poly(β-amino ester)/DNA complexes

Azahara Rata-Aguilar, Nathaly Segovia-Ramos, Ana Belén Jódar-Reyes, Víctor Ramos-Pérez, Salvador Borrós, Juan Luis Ortega-Vinuesa and Antonio Martín-Rodríguez

Colloids and Surfaces B: Biointerfaces, 2015, 126, 374
DOI: 10.1016/j.colsurfb.2014.11.048

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

Vincenzo G Benza, Bruno Bassetti, Kevin D Dorfman, Vittore F Scolari, Krystyna Bromek, Pietro Cicuta and Marco Cosentino Lagomarsino

Rep. Prog. Phys., 2012, 75, 076602
DOI: 10.1088/0034-4885/75/7/076602

New Insights into the Role of Ligand-Binding Modes in GC-DNA Condensation through Thermodynamic and Spectroscopic Studies

Sakshi Gupta, Soumya Aggarwal and Manoj Munde

ACS Omega, 2023, 8, 4554
DOI: 10.1021/acsomega.2c01557

Bridging β‐Cyclodextrin Prevents Self‐Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids

Pierre Evenou, Julien Rossignol, Gaëlle Pembouong, Adélie Gothland, Dmitri Colesnic, Renaud Barbeyron, Sergii Rudiuk, Anne‐Geneviève Marcelin, Mickaël Ménand, Damien Baigl, Vincent Calvez, Laurent Bouteiller and Matthieu Sollogoub

Angewandte Chemie, 2018, 130, 7879
DOI: 10.1002/ange.201802550

Pathway-controlled formation of mesostructured all-DNA colloids and superstructures

Rémi Merindol, Sebastian Loescher, Avik Samanta and Andreas Walther

Nature Nanotech, 2018, 13, 730
DOI: 10.1038/s41565-018-0168-1

Dynamic metallization of spherical DNA via conformational transition into gold nanostructures with controlled sizes and shapes

Won Kyu Lee, Kihun Kwon, Yeonho Choi and Jae-Seung Lee

Journal of Colloid and Interface Science, 2021, 594, 160
DOI: 10.1016/j.jcis.2021.02.134

Formation of DNA pearl‐necklace structures on mica surface governed by kinetics and thermodynamics

Bo Xi and Shi‐Yong Ran

J Polym Sci B Polym Phys, 2017, 55, 971
DOI: 10.1002/polb.24344

A review on salt-induced DNA compaction and charge inversion

Khadka B. Chhetri

Progress in Biophysics and Molecular Biology, 2025, 195, 15
DOI: 10.1016/j.pbiomolbio.2024.11.003

Enhancement and Modulation of Enzymatic Activity through Higher‐Order Structural Changes of Giant DNA–Protein Multibranch Conjugates

Sergii Rudiuk, Anna Venancio‐Marques and Damien Baigl

Angew Chem Int Ed, 2012, 51, 12694
DOI: 10.1002/anie.201206962

Specific effects of antitumor active norspermidine on the structure and function of DNA

Takashi Nishio, Yuko Yoshikawa, Chwen-Yang Shew, Naoki Umezawa, Tsunehiko Higuchi and Kenichi Yoshikawa

Sci Rep, 2019, 9
DOI: 10.1038/s41598-019-50943-1

Complexation induced by weak interaction between DNA and PEO-b-P4VP below the CMC of the polymer

Han Miao, Ya-fen Wang, Hai-yan Dong and Dao-yong Chen

Chin J Polym Sci, 2017, 35, 46
DOI: 10.1007/s10118-016-1857-6

Spectroscopic, Viscositic, DNA Binding and Cytotoxic Studies of Newly Synthesized Steroidal Imidazolidines

Ayaz Mahmood Dar, Shamsuzzaman and Shakir Khan

J Fluoresc, 2016, 26, 639
DOI: 10.1007/s10895-015-1750-7

Caging Polycations: Effect of Increasing Confinement on the Modes of Interaction of Spermidine3+ With DNA Double Helices

Tudor Vasiliu, Francesca Mocci, Aatto Laaksonen, Leon De Villiers Engelbrecht and Sergiy Perepelytsya

Front. Chem., 2022, 10
DOI: 10.3389/fchem.2022.836994

Conformational SERS Classification of K‐Ras Point Mutations for Cancer Diagnostics

Judit Morla‐Folch, Patricia Gisbert‐Quilis, Matteo Masetti, Eduardo Garcia‐Rico, Ramon A. Alvarez‐Puebla and Luca Guerrini

Angew Chem Int Ed, 2017, 56, 2381
DOI: 10.1002/anie.201611243

Double-strand breaks in genome-sized DNA caused by mechanical stress under mixing: Quantitative evaluation through single-molecule observation

Hayato Kikuchi, Keiji Nose, Yuko Yoshikawa and Kenichi Yoshikawa

Chemical Physics Letters, 2018, 701, 81
DOI: 10.1016/j.cplett.2018.04.042

Non-Viral RNA Therapies for Non-Small Cell Lung Cancer and Their Corresponding Clinical Trials

Palas Balakdas Tiwade, Vincent Fung, Rachel VanKeulen-Miller, Eshan Amruth Narasipura, Yutian Ma and Owen S. Fenton

Mol. Pharmaceutics, 2025, 22, 1752
DOI: 10.1021/acs.molpharmaceut.4c00871

Compaction of Calf Thymus DNA by a Potential One-Head-Two-Tail Surfactant: Properties of Nanomaterials and Biological Testing for Gene Delivery

Shalini Dyagala, Milan Paul, Vinod Kumar Aswal, Swati Biswas and Subit Kumar Saha

ACS Appl. Bio Mater., 2023, 6, 3848
DOI: 10.1021/acsabm.3c00470

Agarose-based biomaterials for advanced drug delivery

Mohsen Khodadadi Yazdi, Ali Taghizadeh, Mohsen Taghizadeh, Florian J. Stadler, Mehdi Farokhi, Fatemeh Mottaghitalab, Payam Zarrintaj, Joshua D. Ramsey, Farzad Seidi, Mohammad Reza Saeb and Masoud Mozafari

Journal of Controlled Release, 2020, 326, 523
DOI: 10.1016/j.jconrel.2020.07.028

Probing the effect of PEG-DNA interactions and buffer viscosity on tethered DNA in shear flow

Fatema Tuz Zohra, Huda Al-Zuhairi, Jefferson Reinoza, HyeongJun Kim, Andreas Hanke and Xiaojun Ren

PLoS One, 2025, 20, e0329961
DOI: 10.1371/journal.pone.0329961

Molecular behavior of DNA in a cell-sized compartment coated by lipids

Tsutomu Hamada, Rie Fujimoto, Shunsuke F. Shimobayashi, Masatoshi Ichikawa and Masahiro Takagi

Phys. Rev. E, 2015, 91
DOI: 10.1103/PhysRevE.91.062717

Direct Evidence of Divalent Manganese Ion‐Induced DNA Condensation at Room Temperature

Jun‐Li Jia, Bo Xi and Shi‐Yong Ran

Macro Chemistry & Physics, 2016, 217, 1629
DOI: 10.1002/macp.201600123

Real-Time Monitoring of the Multistate Conformational Dynamics of Polypurine Reverse Hoogsteen Hairpin To Capture Their Triplex-Affinity for Gene Silencing by smFRET Microspectroscopy

Debolina Bandyopadhyay and Padmaja P. Mishra

J. Phys. Chem. B, 2020, 124, 8230
DOI: 10.1021/acs.jpcb.0c05493

Spermine-Based Poly(β-amino ester)s for siRNA Delivery against Mutated KRAS in Lung Cancer

Yao Jin, Friederike Adams, Lorenz Isert, Domizia Baldassi and Olivia M. Merkel

Mol. Pharmaceutics, 2023, 20, 4505
DOI: 10.1021/acs.molpharmaceut.3c00206

Polyethylenimine coated plasmid DNA–surfactant complexes as potential gene delivery systems

Diana Costa, Wuge H. Briscoe and João Queiroz

Colloids and Surfaces B: Biointerfaces, 2015, 133, 156
DOI: 10.1016/j.colsurfb.2015.06.005

Ion-Induced Volume Transition in Gels and Its Role in Biology

Matan Mussel, Peter J. Basser and Ferenc Horkay

Gels, 2021, 7, 20
DOI: 10.3390/gels7010020

Longer DNA exhibits greater potential for cell-free gene expression

Takashi Nishio, Yuko Yoshikawa, Kenichi Yoshikawa and Shin-ichi Sato

Sci Rep, 2021, 11
DOI: 10.1038/s41598-021-91243-x

Compaction of DNA using C12EO4 cooperated with Fe3+

Ling Wang, Lu Xu, Guihua Li, Lei Feng, Shuli Dong and Jingcheng Hao

Colloids and Surfaces B: Biointerfaces, 2016, 144, 355
DOI: 10.1016/j.colsurfb.2016.04.030

Amino Acid Sequence of Oligopeptide Causes Marked Difference in DNA Compaction and Transcription

Anatoly Zinchenko, Hiroyuki Hiramatsu, Hideaki Yamaguchi, Koji Kubo, Shizuaki Murata, Toshio Kanbe, Norio Hazemoto, Kenichi Yoshikawa and Tatsuo Akitaya

Biophysical Journal, 2019, 116, 1836
DOI: 10.1016/j.bpj.2019.04.010

Synergistic Regulation of DNA Morphology by Metal Cations and Low pH

Xia Wang, Ying Wang, Mingyan Gao, Fengyan Hou, Junxi Wang, Jingyu Wang, Ye Li and Zuobin Wang

Microscopy Res & Technique, 2025, 88, 696
DOI: 10.1002/jemt.24737

Enhancement and Modulation of Enzymatic Activity through Higher‐Order Structural Changes of Giant DNA–Protein Multibranch Conjugates

Sergii Rudiuk, Anna Venancio‐Marques and Damien Baigl

Angewandte Chemie, 2012, 124, 12866
DOI: 10.1002/ange.201206962

Photodependent Melting of Unmodified DNA Using a Photosensitive Intercalator: A New and Generic Tool for Photoreversible Assembly of DNA Nanostructures at Constant Temperature

Anna Bergen, Sergii Rudiuk, Mathieu Morel, Thomas Le Saux, Heiko Ihmels and Damien Baigl

Nano Lett., 2016, 16, 773
DOI: 10.1021/acs.nanolett.5b04762

Dendritic and Nanowire Assemblies of Condensed DNA Polymer Brushes

Dan Bracha and Roy H. Bar-Ziv

J. Am. Chem. Soc., 2014, 136, 4945
DOI: 10.1021/ja410960w

DNA-Guided Assemblies toward Nanoelectronic Applications

Sandeepa Kulala Vittala and Da Han

ACS Appl. Bio Mater., 2020, 3, 2702
DOI: 10.1021/acsabm.9b01178

Fast and Ample Light Controlled Actuation of Monodisperse All‐DNA Microgels

Rémi Merindol, Nicolas Martin, Thomas Beneyton, Jean‐Christophe Baret and Serge Ravaine

Adv Funct Materials, 2021, 31
DOI: 10.1002/adfm.202010396

Reversible Supra‐Folding of User‐Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates

Koyomi Nakazawa, Farah El Fakih, Vincent Jallet, Caroline Rossi‐Gendron, Marina Mariconti, Léa Chocron, Mafumi Hishida, Kazuya Saito, Mathieu Morel, Sergii Rudiuk and Damien Baigl

Angewandte Chemie, 2021, 133, 15342
DOI: 10.1002/ange.202101909

Reversible Redox Controlled DNA Condensation by a Simple Noncanonical Dicationic Diphenylalanine Derivative

Ana M. Bernal‐Martínez, César A. Angulo‐Pachón, Francisco Galindo and Juan F. Miravet

Biopolymers, 2025, 116
DOI: 10.1002/bip.70001

Design of polyelectrolyte core-shells with DNA to control TMPyP binding

Vanda Vaz Serra, Raquel Teixeira, Suzana M. Andrade and Sílvia M.B. Costa

Colloids and Surfaces B: Biointerfaces, 2016, 146, 127
DOI: 10.1016/j.colsurfb.2016.05.047

Gold Nanosystems Covered with Doxorubicin/DNA Complexes: A Therapeutic Target for Prostate and Liver Cancer

Rosa M. Giráldez-Pérez, Elia Grueso, Antonio J. Montero-Hidalgo, Raúl M. Luque, José M. Carnerero, Edyta Kuliszewska and Rafael Prado-Gotor

IJMS, 2022, 23, 15575
DOI: 10.3390/ijms232415575

Noncanonical Condensation of Nucleic Acid Chains by Hydrophobic Gold Nanocrystals

Yu Li, Haoran Zheng, Hui Lu, Mulin Duan, Cong Li, Mingqiang Li, Jiang Li, Lihua Wang, Qian Li, Jing Chen and Jianlei Shen

JACS Au, 2023, 3, 2206
DOI: 10.1021/jacsau.3c00252

UV-Induced Bursting of Cell-Sized Multicomponent Lipid Vesicles in a Photosensitive Surfactant Solution

Antoine Diguet, Miho Yanagisawa, Yan-Jun Liu, Elodie Brun, Sacha Abadie, Sergii Rudiuk and Damien Baigl

J. Am. Chem. Soc., 2012, 134, 4898
DOI: 10.1021/ja211664f

Gelatin-based nanoparticles as DNA delivery systems: Synthesis, physicochemical and biocompatible characterization

M.C. Morán, N. Rosell, G. Ruano, M.A. Busquets and M.P. Vinardell

Colloids and Surfaces B: Biointerfaces, 2015, 134, 156
DOI: 10.1016/j.colsurfb.2015.07.009

Polarization of ions under geometric confinement in the strong-interacting regime: A two-ring model study

Yiing-Rei Chen, Sio-Kit Ng and Chi-Lun Lee

The Journal of Chemical Physics, 2012, 137
DOI: 10.1063/1.4772584

On-chip DNA preconcentration in different media conductivities by electrodeless dielectrophoresis

Shunbo Li, Ziran Ye, Yu Sanna Hui, Yibo Gao, Yusheng Jiang and Weijia Wen

Biomicrofluidics, 2015, 9
DOI: 10.1063/1.4932177

Structure‐Activity Relationships in Nucleic‐Acid‐Templated Vectors Based on Peptidic Dynamic Covalent Polymers

Dan‐Dan Su, Lamiaa M. A. Ali, Maëva Coste, Nabila Laroui, Yannick Bessin, Mihail Barboiu, Nadir Bettache and Sébastien Ulrich

Chemistry A European J, 2023, 29
DOI: 10.1002/chem.202202921

Biological Amyloids Chemically Damage DNA

Istvan Horvath, Obed Akwasi Aning, Sriram KK, Nikita Rehnberg, Srishti Chawla, Mikael Molin, Fredrik Westerlund and Pernilla Wittung-Stafshede

ACS Chem. Neurosci., 2025, 16, 355
DOI: 10.1021/acschemneuro.4c00461

Polycationic Macrocyclic Scaffolds as Potential Non-Viral Vectors of DNA: A Multidisciplinary Study

Ana L. Barrán-Berdón, Belén Yélamos, Luis García-Río, Òscar Domènech, Emilio Aicart and Elena Junquera

ACS Appl. Mater. Interfaces, 2015, 7, 14404
DOI: 10.1021/acsami.5b03231

A Green Solvent Induced DNA Package

Sagar Satpathi, Abhigyan Sengupta, V. M. Hridya, Krishna Gavvala, Raj Kumar Koninti, Bibhisan Roy and Partha Hazra

Sci Rep, 2015, 5
DOI: 10.1038/srep09137

Molecular design and structural characterization of photoresponsive azobenzene-based polyamide units

Marta Dudek, Ziemowit Pokładek, Marco Deiana and Katarzyna Matczyszyn

Dyes and Pigments, 2020, 180, 108501
DOI: 10.1016/j.dyepig.2020.108501

ATP/azobenzene-guanidinium self-assembly into fluorescent and multi-stimuli-responsive supramolecular aggregates

Olivier Abodja, Nadia Touati, Mathieu Morel, Sergii Rudiuk and Damien Baigl

Commun Chem, 2024, 7
DOI: 10.1038/s42004-024-01226-y

Intrinsic Enantioselectivity of Natural Polynucleotides Modulated by Copper Ions

Yan Fu, Xiongfei Chen, Jinli Zhang and Wei Li

Chirality, 2015, 27, 306
DOI: 10.1002/chir.22430

Translocation of a Polyelectrolyte through a Nanopore in the Presence of Trivalent Counterions: A Comparison with the Cases in Monovalent and Divalent Salt Solutions

Pai-Yi Hsiao

ACS Omega, 2020, 5, 19805
DOI: 10.1021/acsomega.0c02647

Effective RNA Complexation by [2]Catenanes Confers Enhanced Resistance to Enzymatic Degradation

Dimitri Delcourt, José García Coll, Fabien B. L. Cougnon and Sébastien Ulrich

Chemistry A European J, 2025, 31
DOI: 10.1002/chem.202501631

Nucleic‐Acid‐Templated Synthesis of Smart Polymer Vectors for Gene Delivery

José García Coll and Sébastien Ulrich

ChemBioChem, 2023, 24
DOI: 10.1002/cbic.202300333

Oscillatory shear rheology of dilute solutions of flexible polymers interacting with oppositely charged particles

Rangarajan Radhakrishnan and Patrick T. Underhill

AIChE Journal, 2014, 60, 1365
DOI: 10.1002/aic.14380

Binding of DNA by a dinitro-diester calix[4]arene: Denaturation and condensation of DNA

F.J. Ostos, J.A. Lebron, M.L. Moyá, M. Deasy and P. López-Cornejo

Colloids and Surfaces B: Biointerfaces, 2015, 127, 65
DOI: 10.1016/j.colsurfb.2015.01.019

DNA Compaction and Charge Inversion Induced by Organic Monovalent Ions

Wenyan Xia, Yanwei Wang, Anthony Yang and Guangcan Yang

Polymers, 2017, 9, 128
DOI: 10.3390/polym9040128

The Structure of Short and Genomic DNA at the Interparticle Junctions of Cationic Nanoparticles

Patricia Gisbert‐Quilis, Matteo Masetti, Judit Morla‐Folch, Jamie M. Fitzgerald, Nicolas Pazos‐Perez, Eduardo Garcia‐Rico, Vincenzo Giannini, Ramon A. Alvarez‐Puebla and Luca Guerrini

Adv Materials Inter, 2017, 4
DOI: 10.1002/admi.201700724

DNA-empowered synthetic cells as minimalistic life forms

Avik Samanta, Lorena Baranda Pellejero, Marcos Masukawa and Andreas Walther

Nat Rev Chem, 2024, 8, 454
DOI: 10.1038/s41570-024-00606-1

Markedly Different Effects of Monovalent Cations on the Efficiency of Gene Expression

Takashi Nishio, Tomoya Masaoka, Yuko Yoshikawa, Koichiro Sadakane, Takahiro Kenmotsu, Helmut Schiessel and Kenichi Yoshikawa

Advanced Biology, 2023, 7
DOI: 10.1002/adbi.202200164

DNA-Induced Novel Optical Features of Ethyl Viologen-Tethered Perylenediimide Triad

Julfikar H. Mondal, Bapan Pramanik, Meenakshi N. Shinde, Raman Khurana, Nilotpal Barooah, Achikanath C. Bhasikuttan, Debapratim Das and Jyotirmayee Mohanty

J. Phys. Chem. C, 2018, 122, 18061
DOI: 10.1021/acs.jpcc.8b03892

A route to self-assemble suspended DNA nano-complexes

Yves Lansac, Jeril Degrouard, Madalena Renouard, Adriana C. Toma, Françoise Livolant and Eric Raspaud

Sci Rep, 2016, 6
DOI: 10.1038/srep21995

Conformational transition of DNA by dinuclear Pt(II) complexes causes cooperative inhibition of gene expression

Yuta Shimizu, Yuko Yoshikawa, Takahiro Kenmotsu, Seiji Komeda and Kenichi Yoshikawa

Chemical Physics Letters, 2017, 678, 123
DOI: 10.1016/j.cplett.2017.04.039

Facile construction of beads-on-a-string complexes of polymeric micelles and DNA via tunable electrostatic interactions

Yifan Zhang, Xiaojie Li, Wei Wei and Xiaoya Liu

Colloid and Interface Science Communications, 2021, 41, 100366
DOI: 10.1016/j.colcom.2021.100366

Pressurized DNA state inside herpes capsids—A novel antiviral target

Alberto Brandariz-Nuñez, Scott J. Robinson, Alex Evilevitch and Donna Neumann

PLoS Pathog, 2020, 16, e1008604
DOI: 10.1371/journal.ppat.1008604

Conformational SERS Classification of K‐Ras Point Mutations for Cancer Diagnostics

Judit Morla‐Folch, Patricia Gisbert‐Quilis, Matteo Masetti, Eduardo Garcia‐Rico, Ramon A. Alvarez‐Puebla and Luca Guerrini

Angewandte Chemie, 2017, 129, 2421
DOI: 10.1002/ange.201611243

Stability and structural evolution of double-stranded DNA molecules under high pressures: A molecular dynamics study

Salvador Herrera-Velarde, José Ramón Villanueva-Valencia, Paola Mendoza-Espinosa and Ramón Castañeda-Priego

Front. Phys., 2023, 11
DOI: 10.3389/fphy.2023.1076787

Cationic modified gold nanoparticles show enhanced gene delivery in vitro

Geraldine Genevive Lazarus and Moganavelli Singh

Nanotechnology Reviews, 2016, 5, 425
DOI: 10.1515/ntrev-2016-0003

Chlorogenic Acid Protects DNA against Double-strand Breaks: Evidence from Single Molecule Observation

Haruto Ogawa, Takashi Nishio, Yuko Yoshikawa, Koichiro Sadakane and Kenichi Yoshikawa

Chem. Lett., 2023, 52, 524
DOI: 10.1246/cl.230171

Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation

Justin G. Railsback, Abhishek Singh, Ryan C. Pearce, Timothy E. McKnight, Ramón Collazo, Zlatko Sitar, Yaroslava G. Yingling and Anatoli V. Melechko

Advanced Materials, 2012, 24, 4261
DOI: 10.1002/adma.201104891

Interaction between DNA and Trimethyl-Ammonium Bromides with Different Alkyl Chain Lengths

Chao Cheng and Shi-Yong Ran

The Scientific World Journal, 2014, 2014, 1
DOI: 10.1155/2014/863049

DNA binding, artificial nuclease activity and cytotoxic studies of newly synthesized steroidal pyrimidines

Ayaz Mahmood Dar, Bilal Rah, Shafia Mir, Rizwan Nabi, Shamsuzzaman, Manzoor Ahmad Gatoo, Ashraf Mashrai and Yusuf Khan

International Journal of Biological Macromolecules, 2018, 111, 52
DOI: 10.1016/j.ijbiomac.2017.12.128

Modification of a Styryl Dye Binding Mode with Calf Thymus DNA in Vesicular Medium: From Minor Groove to Intercalative

Anamika Manna and Sankar Chakravorti

J. Phys. Chem. B, 2012, 116, 5226
DOI: 10.1021/jp301211m

Transfection Efficiency of DNA Enhanced by Association with Salt-Free Catanionic Vesicles

Lu Xu, Lei Feng, Renhao Dong, Jingcheng Hao and Shuli Dong

Biomacromolecules, 2013, 14, 2781
DOI: 10.1021/bm400616y

The Dynamics of a Collapsing Polyelectrolyte Gel

Giulia L. Celora, Matthew G. Hennessy, Andreas Muench, Barbara Wagner and Sarah Waters

SIAM J. Appl. Math., 2023, 83, 1146
DOI: 10.1137/21M1419726

A Versatile Approach towards the Compaction, Decompaction, and Immobilization of DNA at Interfaces by Using Cyclodextrins

Alfredo González‐Pérez and Juan M. Ruso

ChemPhysChem, 2013, 14, 2544
DOI: 10.1002/cphc.201300234

A dynamic light scattering study of counter-ions condensation on DNA

Lin Yu, Yang Guang-Can and Wang Yan-Wei

Acta Phys. Sin., 2013, 62, 118702
DOI: 10.7498/aps.62.118702

DNA precipitation revisited: A quantitative analysis

Shupeng He, Bozhi Cao, Yi Yi, Shenhao Huang, Xiao Chen, Sheng Luo, Xiaoyu Mou, Tong Guo, Yujie Wang, Yanwei Wang and Guangcan Yang

Nano Select, 2022, 3, 617
DOI: 10.1002/nano.202100152

Preparation of water‐insoluble and biochemically stable RNA hybrid material

Masanori Yamada, Chika Tohyama and Tetsuya Yamada

Polymers for Advanced Techs, 2018, 29, 2890
DOI: 10.1002/pat.4408

Intramolecularly Protein-Crosslinked DNA Gels: New Biohybrid Nanomaterials with Controllable Size and Catalytic Activity

Li Zhou, Mathieu Morel, Sergii Rudiuk and Damien Baigl

Small, 2017, 13, 1700706
DOI: 10.1002/smll.201700706

Histidine-Based Lipopeptides Enhance Cleavage of Nucleic Acids: Interactions with DNA and Hydrolytic Properties

M. Bélières, C. Déjugnat and N. Chouini-Lalanne

Bioconjugate Chem., 2015, 26, 2520
DOI: 10.1021/acs.bioconjchem.5b00542

Recent progress in gene therapy to deliver nucleic acids with multivalent cationic vectors

Elena Junquera and Emilio Aicart

Advances in Colloid and Interface Science, 2016, 233, 161
DOI: 10.1016/j.cis.2015.07.003

Nonspecific characteristics of macromolecules create specific effects in living cells

Kanta Tsumoto, Hiroki Sakuta, Kingo Takiguchi and Kenichi Yoshikawa

Biophys Rev, 2020, 12, 425
DOI: 10.1007/s12551-020-00673-w