Wenqing
Tian
,
Chris
Rielly
and
Huaiyu
Yang
*
Department of Chemical Engineering, Loughborough University, LE11 3RH, Loughborough, UK. E-mail: H.Yang3@lboro.ac.uk
First published on 1st November 2021
Heterogeneous surfaces, such as solid particles, are known to efficiently increase nucleation rates during crystallisations from solution. In this work, air bubbles have been used to act as heterogeneous surfaces, to facilitate the critical nuclei formation of large protein molecules. Protein crystallisation experiments were performed using the hanging-drop method, to investigate the effects of concentrations of lysozyme and sodium chloride, and air bubbles on the nucleation of crystals. The introduction of an air bubble template resulted in an overall reduction in the nucleation induction time, over the majority of the experimental conditions. With air bubbles in the hanging droplets, the population density of the lysozyme crystals was up to 1.5 times higher than that in the droplets that contained no bubbles. For the studied experimental conditions, the mass yield was also found to increase by adding air bubbles into the droplet.
Several efforts have been made to improve protein crystallisations and one of the most successful methods is to use engineered surfaces as heteronucleants.4–6 Engineered surfaces allow control of the crystallisation to produce desired crystal sizes and polymorphs, without changing the operating conditions. Moreover, the nucleation process can be substantially accelerated via favourable surface–solute interactions, such as porous silicon, gold, polystyrene divinylbenzene particles.6–10 Porous materials with certain pore sizes, which are slightly larger than the diameters of proteins, were able to promote local supersaturation and induce nucleus formation.6 Langmuir–Blodgett (LB) nanotemplates and molecularly imprinted polymers (MIP) have been also proven to be effective to improve the crystal quality and to increase the growth rate of protein crystals.11–13 However, concerns were raised about the availability of LB nanotemplates for larger industrial scale applications. Furthermore, MIP and LB nanotemplates can facilitate salt crystallisation in addition to proteins nucleation.14
In contrast to the use of a solid template, a crystallisation using a gas–liquid interface does not introduce external impurities and it is easy to separate the end product and the mother solution. In 1974, the German company Henkell and Co. developed a method to disperse gas bubbles in a supersaturation solution to accelerate the crystallisation of potassium bitartrate for sparkling wine production.15 Wohlgemuth et al.16 checked if the bubble surface itself acts as nucleation centre, for batch cooling crystallisation of dodecanedioic acid, by varying the gassing periods, gas compositions (pure air or saturated with solvent vapour) and bubble surface areas. For crystallisation of adipic acid, it was found that gassing induced nucleation and achieved a narrower crystal size, even when the gas was applied close to the supersaturation limit.17 In an L-alanine crystallisation in a MSMPR cascade, the dispersion of air bubbles into a slightly supersaturated solution, produced crystals with a smaller mean size and a narrower size distribution.18 The utilisation of micro-bubble techniques has also expanded into the research of organic compounds for polymorph control. The crystallisation of the β-form of glycine could be controlled by bubble injection;19 minimizing the bubble size reduced the required supersaturation for the generation of the β-form of glycine and inhibited the polymorphic transformation back to the α-form.19 During the crystallisation of indomethacin in a water/IMC–EtOH system, the addition of N2 fine bubbles decreased the supersaturation needed to obtain a high-yield of the metastable polymorph α-form.20 These studies at larger scale reported the influence of air bubbles on the crystallisation processes. However, the mechanism is still not fully understood, due to limited observation on the gas–liquid interfaces during the nucleation and crystal growth.
The objective of the present study is to investigate the relation between gas–liquid interfaces and protein crystallisation, including the influence on the nucleation and crystal growth. In this work, protein crystallisations of lysozyme by hanging-drop experiments were conducted at pH 4.2 and using a 0.1 M sodium acetate buffer with and without air bubbles. The range of lysozyme concentrations investigated was between 50 to 100 mg mL−1 and 0.7 M to 2 M sodium chloride solutions were used as precipitant to test the influence of gas bubbles over a wide spectrum of conditions. The crystallisation processes were observed under an optical microscope and comparisons were made between cases with (1) one or two air bubbles added into the crystallisation solution of the hanging droplets, and (2) droplets of the crystallisation solution with no air bubbles, under the same operating conditions. The nucleation behaviour was analysed, and population density and yield were compared for these cases.
The screening experiments were performed in 24-well plates (ThermoScientific Nunclon Delta Surface) in a thermostatic incubator (VWR INCU-Line 150R) at 20.0 ± 0.1 °C. To study the static bubble effect on the protein crystallisation, the traditional hanging droplet was compared to the droplet injected with one air bubble, as shown in Fig. 1(b) and (c), respectively. The air bubble was injected by a pipette (SciPette 0.1–2.5 μL) when mixing the crystallisation droplet onto the cover slide. In addition, a second gas bubble was injected into some droplets after nucleation to gain further understanding of how the bubble impedes the crystal growth process; see Fig. 1(d). The hanging drops were observed under an optical microscope (GT Vision GTC-20 and ThermoFischer DXR Raman Microscope) at time intervals of hours or days based on the supersaturation. The induction time was determined by the first time when any visible crystal was observed in one droplet and used to quantitatively compare the nucleation process and influence of experiment conditions on the nucleation. Consequently, the error in observing the induction time is ±0.5 h due to the minimum one-hour observation interval. Due to the possible large variation in induction time observation, each condition was repeated for at least 50 droplets to give a confident result of the average induction time.
The microscope images of the crystals were then analysed with ImageJ software (Wayne Rasband, National Institute of Health, USA) to count the number of crystals formed, to obtain crystal size distributions, and to determine the induction time when crystals were first observed inside the droplets, or to note that nucleation had not occurred. The population density (P), i.e., number of crystals per unit volume in the droplet was calculated to compare the influence of the air bubble on crystallisation progress. The area was measured by drawing the minimum diameter circle to enclose the crystals edges in the images, which was then converted into crystal size. The crystal size was estimated by using the circular equivalent diameter
(1) |
(2) |
m = V × ρ × P | (3) |
Fig. 2 Mean induction times for bubble-free droplets at different concentrations of lysozyme and NaCl and a fixed pH of 4.2. |
In the experiments with a single air bubble in the hanging drop, Fig. 3(a) shows that some crystals were attached to the bubble surface. Moreover, the crystal with a curved facet shown in Fig. 3(b) would appear to have nucleated and grown on the air bubble surface. Another explanation can be proposed for the curved facet: the critical nuclei first form in the bulk solution and then attach and grow on the air bubble. However, some bubbles were injected into the hanging drop after nucleation, and in these cases no crystals were observed with a similar curved shape. This result discounts the alternative explanation and indicates that it is highly probable that the lysozyme nucleates on the surface air bubble and continues to grow on the interface. Fig. 3(c) and (d) show that when the lysozyme nucleated on the bubble surface, the crystal would grow and move with the air–liquid interface. Fig. 3(c) shows two lysozyme crystals with length of 300–500 μm which are growing on a bubble surface. When the air bubble shrank, both crystals were observed to rotate, dragged by the moving air–liquid surface. The movement was not because of the hydrodynamics of the solution in the droplets because all other crystals in the hanging drop remained in the same locations, as shown in Fig. 3(d). The crystal highlighted (inside the red circle of Fig. 3(c) and (d)) made a clockwise rotation, dragged by the bubble surface; the other crystal growing on the opposite side of the bubble underwent a similar rotation due to the shrinkage and translation of the bubble. All these phenomena showed that lysozyme crystals nucleate on the bubble, and the air–liquid surface acted as heterogeneous site for the nucleation. After nucleation, the crystals continued growing on the bubble surface and the bubble acted as a template, which can affect the shape of the crystals.
As shown in Fig. 1(c), experiments were conducted in which a second bubble (circled in orange in Fig. 4(b)) was injected into the droplet, after the visible formation of lysozyme crystals. In these experiments, the second bubbles were found to be less stable, with a much higher rate of shrinkage than the first bubble (circled in green) injected. Fig. 4(a) shows the droplet just before the injection of the second bubble. When the second bubble was injected, its diameter was about two times larger than the diameter of the original bubble, as shown in Fig. 4(b). After 21 hours, the second bubble shrank to become smaller than the first bubble, as shown in Fig. 4(c). The variation in the concentration of lysozyme is proposed as the cause of this difference in bubble shrinkage rates. The protein acts as a surfactant to stabilise bubbles in solution,26 preferentially adsorbing at the gas–liquid interface; the first injected bubble was coated with a higher surface concentration of protein and remained stable in the solution. Crystal formation depletes the bulk lysozyme concentration in the droplet and at the time of second bubble injection the concentration in the droplet has reduced about 70%, which results in a lower surface concentration of proteins on the second bubble injected. Therefore, the second bubble shrank at a higher rate and was prone to collapse in the solution due to its lower stability. This is in agreement with literature that the protein forms an adsorbed layer at the air–water interface, due to the presence of hydrophobic functional group in the lysozyme molecule.26 The adsorbed layer provides an increased resistance to mass transfer and hence reduces the bubble shrinkage rates.
In order to investigate the influence of bubble on the curvature formation of the crystals, the second air bubble was injected to come into contact with several existing crystals. No crystal with curvature shape was observed around the second air bubble after 21 hours Fig. 4(c). It shows that the curvature shape is not a result of the restriction of crystal growth due to the presence of the air bubble in the solution but is for the reason that the crystals nucleated on the air bubble surface (first bubble injected) and then the crystal growth was limited by the air bubble shapes.
The mean induction time was calculated for droplets containing bubbles, using the same method as for bubble-free droplets and was compared to the data presented in Fig. 2. The induction times obtained for the tested range of reactant concentration, were compared for the bubbled and non-bubbled cases using a contour plot in Fig. 5. In Fig. 5, the red region represents conditions where the mean induction time was shortened in bubbled droplets; blue region represents the mean induction time was prolonged in bubbled droplets; green region represents the conditions when the difference between bubbled droplets and non-bubbled is less than 5%. It is clear that for droplets containing bubbles under almost all conditions, lysozyme nucleated faster or at similar times on average compared to non-bubbled droplets. Only 2 out of 18 tested conditions showed a longer mean induction time in droplets with air bubbles but in more than half of the conditions studied, the droplet containing a bubble nucleated in a shorter induction time. As shown in Fig. 5, the shortening in the mean induction time after injecting the air bubble was more predominant for lower lysozyme or NaCl concentrations. In fact, the greatest change in the mean induction time was found at the lowest concentration in this study: the average time for first crystals to appear in the droplets was shortened by 21% in the bubbled droplets for the experiment with 50 mg mL−1 lysozyme and 0.7 M NaCl concentration (the lowest supersaturations studied). On the contrary, the introduction of a bubble had less impact on heterogeneous nucleation for the higher supersaturation conditions. Lin et al.25 studied the nucleation kinetics of lysozyme crystallisation, and found that at lower supersaturations, crystals nucleated by a heterogeneous mechanism, whereas homogeneous nucleation occurred at higher supersaturations. Similarly in the current study at lower supersaturations, nuclei formed heterogeneously at the gas–liquid interface which lowered the surface free energy, and a shorter induction time was obtained after introduction of an air bubble.
Fig. 5 Contour graph of mean induction times comparison between bubbled droplets and non-bubbled droplets for different conditions. |
Another potential reason for the above observations is that the high supersaturations, e.g., for 2 M NaCl, often nucleate the crystal in less than 30 min (the typical time between images captured on the microscope) and it is relatively hard to quantify the difference between the induction times in this experimental set-up. Nonetheless, combining all the experimental conditions and repeat runs, the results indicate that with an air bubble present in the hanging drops, nucleation of protein crystals could occur more readily, with a shortening of the induction time up to 27% less than the non-bubble group.
The effect of air bubbles on protein crystallisation was also evaluated by analysing the crystal population density in the droplets with a range of lysozyme and NaCl concentrations under a pH of 4.2. In Fig. 6 the population density of bubbled and non-bubbled droplets is shown as red and blue columns, respectively by calculating the number of crystals per total volume of the crystallisation droplet. Noticeably, the population density was higher in the droplets with bubbles than droplets without bubbles in all tested conditions. In the case of 50 mg mL−1 lysozyme, the population density of crystals in droplet with air bubble was about 1.5 times greater than the ones without bubbles. The enhancement of the population density in the bubbled droplet reduced as the lysozyme concentration increased, echoing the hypothesis of reduced influence of air bubbles for higher supersaturations in the study of nucleation. The trend was less obvious when comparing droplets with different NaCl concentrations. In the droplets with 1.1 M NaCl solution, the population density of the crystals in the droplet with air bubble was about 1.3 times higher than for droplets without a bubble. At higher concentrations of NaCl, the difference became less apparent.
Fig. 6 Population density comparison in different conditions for droplets with one bubble and without bubble. |
The higher population density of crystals in the droplets with a bubble was mainly due to the large number of crystals attached to the bubble and located close to the bubble surface, indicating that gas–liquid interface facilitated nucleation and crystallisation. The average air bubble shrank 40% ± 7%, and the lower boundary condition 30% was used to cover most of the cases. A region, as 1.3 times larger than the diameter of the air bubbles at 26 h was selected to quantitatively compare the different locations in the hanging drop, as shown in the grey column in Fig. 6. The population density in the region near each bubble was obviously higher than the overall population density in the whole droplet. There were at least twice as many crystals around the bubble than the other parts of solution in the hanging drop, under every experimental condition. As shown in Fig. 6(b), in the droplets with 70 mg mL−1 lysozyme, the population density of crystals was much higher in the solution near the bubble than the other parts of the solution in the droplet (by a factor of up to 7 times). In the high supersaturation conditions, such as 1.5 M and 2 M NaCl concentrations, the increase of population density near the air bubble was smaller compared to cases with lower supersaturations.
Fig. 7 summarises yield comparison for bubbled and non-bubbled droplets at the aforementioned conditions. In Fig. 7, the ratio between mass yields of the bubbled droplets and bubble-free droplets are presented; if the ratio is greater than 1, the bubbled droplets crystallised more lysozyme compared to non-bubbled droplets in the same period of time. The comparison result shows that crystal yields for droplets with one bubble were consistently greater than in droplets without bubbles across all conditions. For 50 mg mL−1, 70 mg mL−1, and 100 mg mL−1 lysozyme concentration respectively under 1.1 M NaCl concentration, the mass yields per unit solution volume were 16.2 mg mL−1, 68.3 mg mL−1, and 95.8 mg mL−1 in the droplets with bubble, respectively. The percentage yield, defined as the ratio of crystallised mass to the theoretical supersaturated mass, was estimated to be 10% higher in the bubbled conditions than that in non-bubbled droplets at 70 mg mL−1 lysozyme concentration after 140 hours. The promotion effect of single air bubble on the crystal production was more apparent when the precipitant NaCl concentration increased and mass yields up to 1.8 times higher were achieved in the droplets containing an air bubble, compared to cases without bubbles at the same lysosome and NaCl concentrations. The general trend is that more lysozyme crystals formed over the same period of time in the droplets with an air bubble, due to faster nucleation and longer growth period, although this was not evident in every case.
(4) |
c = kP | (5) |
The decrease in the induction times with an increase in the protein concentration or the precipitant concentration was in agreement with the literature,25,29 due to an increase in supersaturation. The decrease in the induction time with air bubble present in the droplet was consistent with the previous research on gas injection in other crystallisation systems,30–32 in which the heterogeneous surface decreased the energy barrier of the nucleation. According to the heterogeneous nucleation theory, the relation between the change in the overall free energy required to form a critical nucleus ΔGheterocritial and the corresponding the free energy change for homogeneous nucleation ΔGhomocritial could be represented33 by
ΔGheterocritial = φΔGhomocritial | (6) |
(7) |
Fig. 8 Scheme of interfacial tensions at the boundaries when a foreign surface is present (gas or solid). |
It is important to point out that there are multiple interfaces existing in hanging drop set-up, i.e. inner and outer air–liquid interfaces and solid–liquid interface between glass slide and the solution shown in Fig. 1(c). The water molecules continuously evaporated to leave the solution through the outer air–liquid interface, leading to a high concentration of lysozyme, and the gas molecules in the air bubble continuously dissolved into the solution through inner air–liquid interface, leading to a shrinkage of the air bubble. In the hanging drop set-up, the diffusion of water from top droplet to the reservoir is relatively slow,36 leading to continuous increase in supersaturation before nucleation. The inter air–liquid interface surface area was much less than the outer air–liquid interface surface, however, the crystal morphologies and induction time results show the obvious influences of such small air–liquid interface, indicating the advantages of the inter air–liquid as a heterogeneous nucleation site and different mechanisms for the two air–liquid interfaces. For the solid–liquid interface, it has been revealed that the glass or functionalised silicon can enhance the nucleation of the protein, even though a pairing of the function group or the pore size with the hydrodynamic size of protein is required.37–40 However, both of the forementioned interfaces are present in both the bubbled group and the control group and this study focuses on the comparison and the difference between them. Same amount of the solution is pipetted onto the cover glass with more than 40 repeats, and as a result, the amount of solution contact with the cover slide and the outer vapour can be confidently assumed to be the same for the average result. The effect with the presence of these two interfaces can be eliminated by comparing the average results of the experimental and the control group and the discrepancy between these two groups have to arise from the addition of the air bubble, the only difference between them.
The curved surfaces formed on the protein crystal were very common in this study, such as examples shown in Fig. 3(b), indicating a strong interaction of lysozyme molecules and air bubble surface during the nucleation and crystal growth process. The polymorph of the curved crystals should be same as other crystals in the droplet, which all have tetragonal shape, but the growth of partly curved crystal was blocked by the air bubble template. Nonetheless, it is interesting that these crystals mostly formed on the interface between the injected air bubble and solution (inner air–liquid interface) but not on the interface between the hanging drop and air in the vessel (outer air–liquid interface). The shrinkage rate was different between these two air–liquid interfaces. The change in air bubble diameter after 26 h was about 40.0% (with standard deviation of 7%) decrease compared to less than 0.5% (with standard deviation of 0.2%) decrease for the solution droplet. Proteins can adsorb on the air–liquid interface acting as a lipid surfactant.26,41–44 The air bubble surface, adsorbing the proteins, had a multilayer structure, contributing to a slower desorption and, therefore, it was more difficult to achieve new dynamic equilibrium on the surface of the bubbles during the shrinking.45 The desorption rate may also be limited by the diffusion process.46 The lysozyme surface concentration was estimated to be 7.0 mg m−2 for the case of solution with 50 mg mL−1 lysozyme concentration, according to the literature.26 Assuming the amount of lysozyme molecules on the interface remained the same due to the slow desorption process, the surface concentration was calculated to be 20.0 mg m−2 at the inner air–liquid interface as the surface area reduced 65.0% in 26 h based on the 40% diameter decrease. Therefore, the concentration on the inner air–liquid interface was about three time higher than the concentration on the outer air–liquid interface, due to limited changes in surface area of the outer air–liquid interface. Certain amount of lysozyme molecules adsorbed on both interfaces were able to desorb slowly (decrease in concentration), but it is reasonable to conclude that during the shrinkage of the air bubbles, the concentration on the inner air–liquid interface would always be higher than that on the outer air–liquid interface. The higher concentration, with higher supersaturation level near the air bubble surface area, would result in a thermodynamic advantage for the nucleation.47 Another possible explanation is differences in curvature of substrate surface for these two gas–liquid interfaces. Small bubbles (highly curved) have a higher excess pressure48 leading to topological formation,49 and minimisation of the curvature-induced elastic energy may attract more lysozyme molecules on/near the bubble surface. As mentioned before, the excess pressure of air bubble was about few times higher than the one of the droplets leading to higher chance in change of the topological formation. The higher accumulation of lysozyme molecules on air bubble–solution interface would accelerate the nucleation process. It was noted that population density in the solution immediately around bubble was always higher compared to the solution in the bulk of the droplet. The overall supersaturations in the hanging drop with or without bubble were assumed to be approximately equal at the same experimental time before the nucleation takes place. The temperature of the crystallisation solution in hanging drop was controlled as constant, and during the process, there were no differences of the droplet size observed with or without bubble, i.e., no differences in diffusion rate of water molecules from droplet with and without bubble to the reservoir. Although there were similar experimental conditions in the whole hanging drops with and without bubbles, the increase in the population density indicated that the air bubble in the hanging droplet changed the local thermodynamics or kinetics. However, compared with a solid template, an air bubble exhibits more complicated interactions with solution and solute, e.g., stabilisation of the air bubble by lysozyme molecules (similar to a surfactant), adsorption of lysozyme molecules on/near the air bubble surface, forming clusters on the air bubble interface, mass transfer and dissolution of air molecules into solution.
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