Somen
Mondal
,
Yuval
Agam
,
Ramesh
Nandi
and
Nadav
Amdursky
*
Schulich Faculty of Chemistry, Technion – Israel Institute of Technology, Haifa 3200003, Israel. E-mail: amdursky@technion.ac.il
First published on 11th March 2020
Proteins are the main proton mediators in various biological proton circuits. Using proteins for the formation of long-range proton conductors is offering a bioinspired approach for proton conductive polymers. One of the main challenges in the field of proton conductors is to explore the local environment within the polymers, along with deciphering the conduction mechanism. Here, we show that the protonic conductivity across a protein-based biopolymer can be hindered using straightforward chemical modifications, targeting carboxylate- or amine-terminated residues of the protein, as well as exploring the effect of surface hydrophobicity on proton conduction. We further use the natural tryptophan residue as a local fluorescent probe for the inner local hydration state of the protein surface and its tendency to form hydrogen bonds with nearby water molecules, along with the dynamicity of the process. Our electrical and spectroscopic measurements of the different chemically-modified protein materials as well as the material at different water–aprotic solvent mixtures result in our fundamental understanding of the proton mediators within the material and gaining important insights on the proton conduction mechanism. Our biopolymer can be used as an attractive platform for the study of bio-related protonic circuits as well as a proton conducting biopolymer for various applications, such as protonic transistors, ionic transducers and fuel cells.
Scheme 1 The different chemical modifications of the BSA mat used in this study, from top to bottom: BSA-OMe, BSA-NMe2 and BSA-Hex. |
Following the chemical characterization of the different BSA mats, we followed the PC across them. In here, we have used two strategies in order to explore the role of the inner hydration layer within the BSA mat on its ability to support long-range (2.5 mm) PC. The first is to immerse the mat in different ratio of aprotic solvent, while the second is to use our modified mats with different degree of inner surface hydrophobicity. It is expected that with increasing ratio in favour of the aprotic solvent (acetonitrile (ACN) in our case), the protonic conductivity across the BSA mat will be diminished due to lesser availability of water molecule i.e. less proton source and poor H-bonds network. Indeed, as shown in Fig. 1a, the protonic conductivity (as measured with electrochemical impedance spectroscopy (EIS) in the form of a Nyquist plot) is highly sensitive to the water–ACN ratio within the BSA mat, in which we observed a striking order of magnitude difference between the fully hydrated BSA mat to the one containing 20% water (water:ACN ratio of 0.2:1). Our first strategy already confirmed the crucial role of water molecules in supporting PC across the BSA mat, but for gaining a fundamental understanding of the protein side groups in the conduction mechanism, we used our chemically modified BSA mats. As shown in Fig. 1b, we observed a distinct effect of the different functional group modification on the protonic conduction, in which the conductivity of the native unmodified BSA mat was significantly higher than all other modified BSA mats. It is important to note in this stage that all the different BSA mats were hydrated with around similar amount of water: ∼80 wt% for BSA, BSA-OMe and BSA-NMe2 and ∼73 wt% for BSA-Hex, in which the slightly lower amount of water in the latter is probably due to the more hydrophobic nature of the BSA-Hex mat. We observed that different modifications resulted in different conductivity values (Table 1), whereas the BSA-NMe2, BSA-OMe and BSA-Hex are ∼2.9, 5.3 and 8.3 folds less conducting compared to the unmodified BSA mat. The first important conclusion of this stage is that blocking free carboxylates from forming H-bonds by methylation (BSA-OMe) is more crucial for efficient PC than blocking free primary amines from forming H-bonds by methylation (BSA-NMe2). This conclusion implies that oxo-amino acids are more important in transporting protons across proteins compared to primary amines, even though both can contribute to the integrity of the H-bonds network and both can be protonated. The second important conclusion is that modifying free carboxylates with 6-carbon aliphatic chain (BSA-Hex) resulted in a less conductive mat than the modification with a single carbon methylation (BSA-OMe). This conclusion implies significant changes in the local hydration layer around the surface of the BSA fibrils within the mat between BSA-OMe to the more hydrophobic BSA-Hex.
Fig. 1 Proton conduction across the BSA mat as measured with EIS at (a) different water:ACN mixture, and upon (b) different chemically-functionalized BSA mats. |
Sample | Conductivity (S cm−1) | Mobility (cm2 V−1 S−1) | Carrier density (cm−3) |
---|---|---|---|
BSA-mat | 1.02 ± 0.31 × 10−4 | 6.1 ± 0.08 × 10−3 | 1.05 × 1017 |
BSA-OMe | 1.93 ± 0.18 × 10−5 | 3.3 ± 0.08 × 10−3 | 3.66 × 1016 |
BSA-NMe2 | 3.50 ± 0.06 × 10−5 | 4.3 ± 0.10 × 10−3 | 5.09 × 1016 |
BSA-Hex | 1.23 ± 0.18 × 10−5 | 1.9 ± 0.12 × 10−3 | 4.05 × 1016 |
To explore the protonic mobility (μ) and carrier density (n) for the different chemically-modified BSA mats, we switched to protonic field effect transistor (FET) devices. Here, we measured the source drain current (IDS) against the drain–source bias (VDS) while modulating the gate voltage (VGS) (Fig. 2 and S3†). The transfer characteristic (inset Fig. 2) exhibits higher IDS current magnitude at negative gate voltages, which is indicative for p-type carriers, where in our devices those are the positive protons. We have used our measurements (at the low negative gate bias regime) to calculate the protonic mobility (μ) for the different BSA mat (Table 1) using the equation:
In a short summary, our electrical measurements show that the surface modifications of the BSA mat results in significant changes in the PC efficiency that most probably associated with different PC mechanism across the mat. As stated, the hydration layer within the material has a crucial role in supporting long-range PC, and understanding the dynamics of this layer is of prime importance. This leads us to an inherent advantage of our BSA mats; they contain Trp, a fluorescent amino acid that is extremely sensitive to the polarity of its surrounding due to its ability (or inability) to form H-bonds between its indole ring and surrounding solvent molecules. Accordingly, Trp is frequently used as an intra-protein probe for the local environment of proteins or their level of denaturation.12–15,17
Here, we use Trp as an intramolecular surface reporter to measure the local hydration state within the BSA mats, and specifically, next to the Trp residue. As will be discussed below, we found a correlation between the local hydration state next to the Trp residue to the measured PC across the entire mat. As above, we use different strategies to influence the hydration layer. The first strategy is to immerse the BSA mat in different solvents having different polarities and hydrogen bonding abilities. The steady-state fluorescence of the BSA mat with different solvents (Fig. 3a) clearly shows a shifting in the Trp emission peak position from 332 to 317 nm with decreasing solvent polarity from water all the way to dioxane. We further measure the Trp fluorescence at different water: ACN mixtures (Fig. 3b), and in accordance with the previous measurements, we observed a gradual shift in the emission peak position from 332 nm at pure water to 321 at pure ACN. Our results show that indeed Trp can be used as an inner probe within the BSA mat for the local hydration, and its fluorescence is related to whether it can form H-bonds (in protic solvents or high fraction of them) or not.
Fig. 3 Normalized steady state fluorescence spectra of (a) BSA mat in different solvents, and (b) in different water:ACN mixtures. |
Measuring the Trp fluorescence at different water:ACN ratio is also allowing us to explore the differences (if any) between the interaction of the solvent with the surface to the one between the solvent molecules themselves (bulk solution). This can be done by comparing the Trp peak position energy (E(F) in units of kcal mol−1), which is indicative to solvent–surface interactions, to the common polarity parameter of ET(30), which is indicative of solvent–solvent interactions, for different mole fraction of water (χw) in ACN.18 As can be seen in Fig. 4a, the change in E(F) is non-linear, while at χw > 0.6 it reaches nearly saturation, indicating the saturation of the Trp surrounding with water molecules together with its ability to form H-bonds with these water molecules. This non-linear behavior of E(F) is very different from the one of ET(30) that exhibits a large drop in values from neat ACN to χw = 0.2, a linear relation at 0.2 < χw < 0.8 and a large drop from χw = 0.8 to neat H2O. This large deviation between E(F) and ET(30) suggests that surface–solvent properties of the BSA mat are different from bulk solvent properties. The main question here is whether the PC takes place along the surface of the BSA mat or through bulk solvent? From Fig. 4b and c we can easily see that the resistivity of the BSA mats measured at different water:ACN ratio (Fig. 1a) follows the same behavior of E(F) and not the one of ET(30). This is a further strong indication to the involvement of the protein surface (and its amino acids side chains) in mediating the protons along the structure.
Next, we have followed the Trp fluorescence of our various chemically modified BSA mats and compared them to the unmodified mat in its hydrated and dry forms. A dry BSA mat means the removal of all non-tightly bound water molecules, whereas the tightly bound water molecules constitutes around 7% of the dry BSA mat mass.7 As can be seen in Fig. 5a, the Trp emission peak position of the BSA mat undergoes significant hypsochromic shift upon drying the mat from 332 to 317 nm for the hydrated and dry BSA mats, respectively, similar to the location of the peak in aprotic solvents (Fig. 3a). The Trp emission peak positions of all the different BSA mats are located between the one of the hydrated BSA mat to the one of the dry mat. Noticeably, with increasing number of added (sp3) carbon modification we observed more hypsochromic shift, in the order of BSA-OMe (326 nm) → BSA-NMe2 (323 nm) → BSA-Hex (321 nm). Our results imply that the added hydrophobic interactions between the modified mat to the Trp residue induces a local dehydration in the vicinity of the aromatic residue.19
For exploring the time-domain dynamics of the inner hydration layer within the different BSA mats we turned into time-resolved fluorescence study of the Trp emission. The collected fluorescence decay traces (Fig. 5b) exhibit a bi-exponential nature (Table 2), one being in the ns time scale while the other in the sub-ns, which is commonly attributed to different Trp conformers.20 The fast decay component (τ1) can be ascribed to the solvation dynamics of the Trp with surrounding water molecules, whereas the slow decay component (τ2) can be ascribed to the less solvated Trp conformation due to its hydrophobic interaction with other moieties.15 Accordingly, a more solvated surrounding of the Trp will result in fast τ1 values along with its larger amplitude (a1) compared to the amplitude of the second component (a2). Indeed, Table 2 shows that while the fast component of the BSA mat contributes more than 54% of its decay, the one of the dry BSA mat is only 40%, and τ1 is faster for the hydrated mat (160 ps) compared to the dry mat (210 ps). The lifetimes values obtained with the BSA-Hex are very similar to the ones of the dry BSA mat, and we even received lower a1 for the BSA-Hex (30.2%) than the dry BSA mat, indicating the very dry environment surrounding the protein in this modification. Interestingly, we received rather similar amplitudes for BSA-OMe (43.3%) and BSA-NMe2 (42.4%) compared to the dry mat, albeit with much slower decay (τ1 = 300 and 320 ps for BSA-OMe and BSA-NMe2 respectively). These slower decays are probably due to local dehydration of the Trp only by the short methyl functionalization and not by the longer hexyl chain, in a rather similar trend as was reported for the interaction of Trp and urea derivatives.19
Sample | a 1 (%) | τ 1 (ps) | a 2 (%) | τ 2 (ns) | 〈τ〉b (ns) |
---|---|---|---|---|---|
a The “a” values are the relative amplitudes of each lifetime component. The χ2 values determine the goodness of the fits, which is >0.99 for all decays. Standard deviation for amplitude analysis is ±5%. b Averaged lifetimes. | |||||
BSA mat-wet | 54 | 160 | 46 | 1.35 | 0.74 |
BSA-OMe | 43.3 | 300 | 56.7 | 2.10 | 1.33 |
BSA-NMe2 | 42.4 | 320 | 57.6 | 2.35 | 1.47 |
BSA-Hex | 30.2 | 220 | 69.8 | 1.46 | 1.08 |
BSA mat-dry | 40 | 210 | 60 | 1.45 | 0.95 |
We have used our time-resolved measurements together with the steady-state ones to calculate the fast (1 ns) time-resolved area normalized emission spectra (TRANES) of the different BSA mats (Fig. 6). TRANES is a convenient tool to follow the emitting species of the excited state. We observed a gradual bathochromic shift as a function of time for all of the different BSA mats in their main emissive peak, which is due to the time-dependent solvation of the Trp. Interestingly, an additional very short-lived peak was found at ∼400 nm, which was most prominent at the hydrated BSA mat. We can ascribe this peak to a radical formation on the Trp, which was shown to undergo a proton coupled electron transfer process resulting in the formation of an hydronium ion via the cleavage of disulfide bond.21,22 Due to the importance of a water molecule as an acceptor for a proton in this process, it takes place mainly in the unmodified BSA mat. This intriguing process can be viewed as a UV-light-induced self-doping of the BSA mat with both electrons and ions, which might further contribute to the higher conductivity of the BSA mat in comparison to the different modification. It should be mentioned that melanin, a different biological material, has been also showed to produce free carriers (free radicals and hydronium ions) after absorption of water via comproportionation reaction, accountable for the high conductivity of melanin based materials.23 We have used the TRANES curves to calculate the hydration correlation function C(t) (Fig. S4†), i.e., an exponential fitting for the solvation time constant, C(t), of the bathochromic shift, Δν, for the various BSA mats (Table 3). As expected, the solvation time constant for the hydrated mat (267 ps) is faster than the one of the dry mat (334 ps) with larger bathochromic shift. Surprisingly, the solvation time for all the various modification was even slower than the dry BSA mat, indicating the important role of the chemical modification on the ability of the Trp surrounding to be solvated. The slowest calculated time constants were for BSA-OMe (430 ps) and BSA-NMe2 (458 ps), which is in line with the slow Trp emission decay, and as discussed, is probably due to the specific interaction between the methyl group and the Trp indole ring that slows down the solvation time. BSA-Hex exhibit the smallest bathochromic shift (only 6 nm), which is a strong indication to the poor solvation taking place in this mat.
Sample | Δν (nm) | C(t) (ps) |
---|---|---|
BSA mat | 17 | 267 |
BSA-OMe | 16 | 430 |
BSA-NMe2 | 12 | 458 |
BSA-Hex | 6 | 369 |
Dry BSA mat | 12 | 334 |
In the next section, we will use our various measurements to discuss the contribution of the mentioned two conduction mechanisms of the native BSA mat vs. the different chemical modified mats (Scheme 2). The native BSA mat contains numerous protonable amino acids, and consequently it is more susceptible to form hydrogen bonds network with the water molecules within the mat (Scheme 2a). This situation is similar to other biological materials, such as the mentioned works with the reflectin protein or the polysaccharides.8,16,26,27 Accordingly, as suggested previously for the latter materials, we also suggest here that the PC across the native mat is due to proton hopping between water molecules and functional group (amino acid residues) on the surface of the BSA mat that can participate in an H-bond. In our current study, we show that the H-bonds network between water molecules and functional groups can be interrupted either by replacing water by an aprotic solvent or by blocking the latter mentioned amino acids using chemical modifications. The disruption of the H-bonds network in the various chemically-modified BSA mats can result in a situation where protons can diffuse along water channels with less interactions between water molecules and functional groups (Scheme 2b). Though it is important to mention that other amino acid as well as the amide bonds can also participate in the formation of H-bonds, hence we do not claim that in the chemically-modified BSA mat the mechanism is purely through water channels. The lack of any structural insight on the internal molecular organization within the BSA mat does not allow us to know to what degree the H-bonds network within the mat is disrupted upon the different chemical modifications.
To support our understanding of the PC mechanism across the various BSA mats in this study we turned to our results. We have used steady-state and time-resolved fluorescence study of the Trp residue to probe the local hydration layer within the various BSA mats, and showed that upon chemical modifications the surface hydration completely alters. More specifically, we showed that in the native mat, the Trp residue is more pronounced to form H-bonds with nearby water molecules than all other chemically-modified mats. Hence, supporting our notion that proton diffusion along the native BSA mat is aided by the formation of H-bonds between water molecules and the surface of the protein fibril, where in the chemically-modified mats, the surface is less accessible to water molecules. The more hydrophobic environment close to the protein surface of the modified mats, the less interaction between water molecules and the protein surface, hence, the more disruption of the H-bonds network. Our PC measurements (Fig. 1) also support our latter notion, and upon disruption of the H-bonds network, either by our chemical modifications or by increasing the aprotic solvent content, the conductivity across the mat is being reduced. Whereas, the mat with the most hydrophobic protein surface, the BSA-Hex mat, and the mat with the highest content of the aprotic solvent have the lowest measured PC. The same trend also appears in our calculated protonic mobility values (Table 1).
While trying to justify the different PC mechanism between the native BSA mat to the chemically-modified ones, or better to say different contributions of different PC mechanisms, we need to discuss PT on the molecular level. The PT efficiency between a proton donor to a proton acceptor is determined by the proton transition probability (W) that can be written in its general form:29
In general, no matter what the PC mechanism is, it should be a thermally activated process, and indeed, we observed a temperature-dependent behaviour in our EIS measurements for all the different modified BSA mats (Fig. 7 top panels). In these measurements, we observed that the calculated activation energy (Ea), by linear fitting the logarithms of the conductivity (σ) as function of inverse temperature (T) to Arrhenius equation, , altered between the different BSA mats, whereas all the modified BSA mats had higher activation energy compared to the unmodified mat. The relatively high activation energies of all the modified BSA mats suggest that the PC mechanism across the water channels of the modified mats (Scheme 2b) is not the vehicular mechanism, as it is expected to have lower activation energy (<0.09 eV) than we observed.29 The increase in activation energy upon the chemical modification suggests the involvement of an energy barrier for the proton hopping step between the different proton's mediators within the BSA mat, and that the mechanism is over-the-barrier type of mechanism.30 As can be observed in our schematic representation (Scheme 2), the chemical modifications result in a less dense hydrogen bonding network as there are less proton donors or acceptors in the system (also manifested in the lower carrier density, Table 1). According to the proton hopping mechanism,29 a dense hydrogen bonding network (as in the native unmodified BSA mat) should have an averaged lower difference between the equilibrium proton donor–acceptor distance to the one in the transition state, which should lead to a lower activation energy, as we observed in our results.
The second measurement that we performed was to follow the KIE upon deuterating our samples (Fig. 7, bottom panels). In general, a PC process involving water molecules should have a positive KIE, meaning a decrease in conductivity upon deuteration, as we observed for all our samples.31 According to the Grotthuss mechanism of proton hopping along a hydrogen bond network, the KIE should result in around 29% decrease in proton diffusion upon deuteration.32 All our measured KIE are around this value, hence, in line with our temperature dependence studies, it is a further justification that our measured PC is resulting from proton hopping both before and after the chemical modifications. As a comparison, the KIE of the vehicular mechanism should result in less than 10% decrease in proton diffusion upon deuteration.29 The KIE magnitude of proton hopping is resulting from effective vibrational frequencies (ωeff) associated with the proton/deuteron as well as differences in the potential surfaces of the proton hopping reaction.29 Since our system is highly complexed, it is rather impossible to resolve each proton hopping step along the hydrogen bonding network. Nevertheless, the similar change in the measured KIE for the different modified BSA mat compared to the native one suggests a similar change of the proton hopping characteristics, hence supporting our representation for the different PC mechanisms (Scheme 2).
All in all, our measurements here support our notion that PC across the native unmodified mat is along a dense hydrogen bonding network comprising the amino acids side groups and water molecules, whereas upon the various chemical modifications, this network is being disrupted, with less contribution of the amino acids side chains. Nevertheless, it is important to stress here that some of our observed changes (such as in the recently discussed activation energy and KIE) can be considered relatively minor (a change of ∼20–30% from the unmodified mat). Here, we should take into consideration that several functional groups along the protein backbone can participate in the hydrogen-bonding network. Hence, it is likely that the PC mechanism is not fundamentally different upon the chemical modifications, but it is rather a change in the ratio between proton hopping through water to the one involving protein's functional groups for the different chemical modifications and for the native mat.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc04392f |
This journal is © The Royal Society of Chemistry 2020 |