Multi-element stable isotope Raman microspectroscopy of bacterial carotenoids unravels rare signal shift patterns and single-cell phenotypic heterogeneity

Julian Weng, Kara Müller, Oleksii Morgaienko, Martin Elsner and Natalia P. Ivleva

Analyst, 2023, 148, 128
DOI: 10.1039/D2AN01603F

Ultrasensitive detection of E. coli using bioinspired based platform

Sawsan Almohammed, Tristan Nolan, Niamh Martin, Wim G. Meijer, Brian J. Rodriguez and James H. Rice

Anal. Methods, 2025, 17, 10
DOI: 10.1039/D4AY01677G

Rapid differentiation of Campylobacter jejuni cell wall mutants using Raman spectroscopy, SERS and mass spectrometry combined with chemometrics

Malama Chisanga, Dennis Linton, Howbeer Muhamadali, David I. Ellis, Richard L. Kimber, Aleksandr Mironov and Royston Goodacre

Analyst, 2020, 145, 1236
DOI: 10.1039/C9AN02026H

A positively charged sensor array for identification of microorganisms using fluorescence response patterns

Yufan Ma, Guoyang Zhang, Xuefei Wang, Sio-Long Lo and Zhuo Wang

Analyst, 2025, 150, 3918
DOI: 10.1039/D5AN00439J

Development of uncoated near-spherical gold nanoparticles for the label-free quantification of Lactobacillus rhamnosus GG by surface-enhanced Raman spectroscopy

Elie Akanny, Anne Bonhommé, Carine Commun, Anne Doleans-Jordheim, François Bessueille, Sandrine Bourgeois and Claire Bordes

Anal Bioanal Chem, 2019, 411, 5563
DOI: 10.1007/s00216-019-01938-4

Comparison of bacteria in different metabolic states by micro-Raman spectroscopy

Haodong Shen, Petra Rösch, Lara Thieme, Mathias W. Pletz and Jürgen Popp

Journal of Molecular Structure, 2023, 1277, 134831
DOI: 10.1016/j.molstruc.2022.134831

Surface‐enhanced Raman spectroscopy using uncoated gold nanoparticles for bacteria discrimination

Elie Akanny, Anne Bonhommé, Carine Commun, Anne Doleans‐Jordheim, Carole Farre, François Bessueille, Sandrine Bourgeois and Claire Bordes

J Raman Spectroscopy, 2020, 51, 619
DOI: 10.1002/jrs.5827

Raman spectroscopic peculiarities of Icelandic poorly crystalline minerals and their implications for Mars exploration

Victoria Muñoz-Iglesias, Laura Sánchez-García, Daniel Carrizo, Antonio Molina, Maite Fernández-Sampedro and Olga Prieto-Ballesteros

Sci Rep, 2022, 12
DOI: 10.1038/s41598-022-09684-x

Advances in microfluidic strategies for single-cell research

Yixin Liu, Zihui Fan, Liang Qiao and Baohong Liu

TrAC Trends in Analytical Chemistry, 2022, 157, 116822
DOI: 10.1016/j.trac.2022.116822

Bacillus thuringiensis Cells Selectively Captured by Phages and Identified by Surface Enhanced Raman Spectroscopy Technique

Salvatore Almaviva, Antonio Palucci, Eleonora Aruffo, Alessandro Rufoloni and Antonia Lai

Micromachines, 2021, 12, 100
DOI: 10.3390/mi12020100

Recent advances on the spectroscopic characterization of microbial biofilms: A critical review

Maria Chiara Sportelli, Christine Kranz, Boris Mizaikoff and Nicola Cioffi

Analytica Chimica Acta, 2022, 1195, 339433
DOI: 10.1016/j.aca.2022.339433

Electric Field Tunability of Photoluminescence from a Hybrid Peptide–Plasmonic Metal Microfabricated Chip

Sawsan Almohammed, Okan K. Orhan, Sorcha Daly, David D. O’Regan, Brian J. Rodriguez, Eoin Casey and James H. Rice

JACS Au, 2021, 1, 1987
DOI: 10.1021/jacsau.1c00323

Tutorial: multivariate classification for vibrational spectroscopy in biological samples

Camilo L. M. Morais, Kássio M. G. Lima, Maneesh Singh and Francis L. Martin

Nat Protoc, 2020, 15, 2143
DOI: 10.1038/s41596-020-0322-8

Surface-enhanced Raman spectroscopy (SERS) in planetary exploration and space research: a review of progress, challenges and opportunities

Marco Veneranda

Applied Spectroscopy Reviews, 2024, 59, 883
DOI: 10.1080/05704928.2023.2263552

SERS-based antibiotic susceptibility testing: Towards point-of-care clinical diagnosis

Nicoleta Elena Dina, Muhammad Ali Tahir, Sadia Z. Bajwa, Imran Amin, Ventsislav K. Valev and Liwu Zhang

Biosensors and Bioelectronics, 2023, 219, 114843
DOI: 10.1016/j.bios.2022.114843

Raman microspectroscopy for microbiology

Kang Soo Lee, Zachary Landry, Fátima C. Pereira, Michael Wagner, David Berry, Wei E. Huang, Gordon T. Taylor, Janina Kneipp, Juergen Popp, Meng Zhang, Ji-Xin Cheng and Roman Stocker

Nat Rev Methods Primers, 2021, 1
DOI: 10.1038/s43586-021-00075-6

Testing the Raman parameters of pollen spectra in automatic identification

S. G. Pereira, A. Guedes, I. Abreu and H. Ribeiro

Aerobiologia, 2021, 37, 15
DOI: 10.1007/s10453-020-09669-1

Single-cell measurement of microbial growth rate with Raman microspectroscopy

Tristan A Caro, Srishti Kashyap, George Brown, Claudia Chen, Sebastian H Kopf and Alexis S Templeton

FEMS Microbiology Ecology, 2024, 100
DOI: 10.1093/femsec/fiae110

Improvement of Surface-Enhanced Raman Scattering Method for Single Bacterial Cell Analysis

Yingchun Yan, Yong Nie, Liyun An, Yue-Qin Tang, Zimu Xu and Xiao-Lei Wu

Front. Bioeng. Biotechnol., 2020, 8
DOI: 10.3389/fbioe.2020.573777

Perspective on Surface-Enhanced Raman Spectroscopic Investigation of Microbial World

Li Cui, DanDan Zhang, Kai Yang, Xian Zhang and Yong-Guan Zhu

Anal. Chem., 2019, 91, 15345
DOI: 10.1021/acs.analchem.9b03996

Black phosphorus-Au filter paper-based three-dimensional SERS substrate for rapid detection of foodborne bacteria

Deqiu Huang, Zhengfei Zhuang, Zhen Wang, Shengtao Li, Huiqing Zhong, Zhiming Liu, Zhouyi Guo and Wen Zhang

Applied Surface Science, 2019, 497, 143825
DOI: 10.1016/j.apsusc.2019.143825

The potential of SERS as an AST methodology in clinical settings

Ota Samek, Silvie Bernatová and Fadi Dohnal

Nanophotonics, 2021, 10, 2537
DOI: 10.1515/nanoph-2021-0095

Surface enhanced Raman spectroscopy for bacteria analysis: a review

E. Akanny, A. Bonhommé, F. Bessueille, S. Bourgeois and C. Bordes

Applied Spectroscopy Reviews, 2021, 56, 380
DOI: 10.1080/05704928.2020.1796698

Breakthrough Solution for Antimicrobial Resistance Detection: Surface‐Enhanced Raman Spectroscopy‐based on Artificial Intelligence

Zakarya Al‐Shaebi, Munevver Akdeniz, Awel Olsido Ahmed, Mine Altunbek and Omer Aydin

Adv Materials Inter, 2025, 12
DOI: 10.1002/admi.202300664

SERS analysis of single cells and subcellular components: A review

M. Barshutina, A. Arsenin and V. Volkov

Heliyon, 2024, 10, e37396
DOI: 10.1016/j.heliyon.2024.e37396

Gold-capped silver nanorods fabricated via glancing angle deposition: Label free, ultra stable SERS substrates for polymicrobial bacteria detection and antibiotics susceptibility testing

Sneha Senapati, Arvind Kaushik, Manleen Kaur, Siddharth Rana, Neetu Singh, Smita S. Kulkarni and J.P. Singh

Applied Surface Science, 2025, 709, 163814
DOI: 10.1016/j.apsusc.2025.163814

Rapid Concentration and Detection of Bacteria in Milk Using a Microfluidic Surface Acoustic Wave Activated Nanosieve

Bryan Ang, Thanavit Jirapanjawat, Khai Ping Tay, Dariush Ashtiani, Chris Greening, Kellie L. Tuck, Adrian Neild and Victor J. Cadarso

ACS Sens., 2024, 9, 3105
DOI: 10.1021/acssensors.4c00291

Rapid Detection Method for Pathogenic Candida Captured by Magnetic Nanoparticles and Identified Using SERS via AgNPs+

Shan Hu, Haiquan Kang, Feng Gu, Chongwen Wang, Siyun Cheng, Wenjing Gong, Liping Wang, Bing Gu and Ying Yang

IJN, 2021, Volume 16, 941
DOI: 10.2147/IJN.S285339

Lectin-Modified Bacterial Cellulose Nanocrystals Decorated with Au Nanoparticles for Selective Detection of Bacteria Using Surface-Enhanced Raman Scattering Coupled with Machine Learning

Asifur Rahman, Seju Kang, Wei Wang, Qishen Huang, Inyoung Kim and Peter J. Vikesland

ACS Appl. Nano Mater., 2022, 5, 259
DOI: 10.1021/acsanm.1c02760

Massively parallel microbubble nano-assembly

Hyungmok Joh, Bin Lian, Shaw-iong Hsueh, Zhichao Ma, Keng-Jung Lee, Si-Yang Zheng, Peer Fischer and Donglei Emma Fan

Nat Commun, 2025, 16
DOI: 10.1038/s41467-025-62070-9

Unveiling bisphenol A-degrading bacteria in activated sludge through plating and 13C isotope labeled single-cell Raman spectroscopy

Habasi Patrick Manzi, Dan Qin, Kai Yang, Hongzhe Li, Claude Kiki, Jean Claude Nizeyimana, Li Cui and Qian Sun

Journal of Hazardous Materials, 2025, 485, 136862
DOI: 10.1016/j.jhazmat.2024.136862

Prospects of Surface-Enhanced Raman Spectroscopy for Biomarker Monitoring toward Precision Medicine

Javier Plou, Pablo S. Valera, Isabel García, Carlos D. L. de Albuquerque, Arkaitz Carracedo and Luis M. Liz-Marzán

ACS Photonics, 2022, 9, 333
DOI: 10.1021/acsphotonics.1c01934

Identifying yeasts using surface enhanced Raman spectroscopy

Tibebe Lemma, Jin Wang, Kai Arstila, Vesa P. Hytönen and J. Jussi Toppari

Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2019, 218, 299
DOI: 10.1016/j.saa.2019.04.010

Rapid identification of pathogens by using surface-enhanced Raman spectroscopy and multi-scale convolutional neural network

Jingyu Ding, Qingqing Lin, Jiameng Zhang, Glenn M Young, Chun Jiang, Yaoguang Zhong and Jianhua Zhang

Anal Bioanal Chem, 2021, 413, 3801
DOI: 10.1007/s00216-021-03332-5

Development overview of Raman-activated cell sorting devoted to bacterial detection at single-cell level

Shuaishuai Yan, Jingxuan Qiu, Liang Guo, Dezhi Li, Dongpo Xu and Qing Liu

Appl Microbiol Biotechnol, 2021, 105, 1315
DOI: 10.1007/s00253-020-11081-1

Comparative Analysis of Machine Learning Algorithms on Surface Enhanced Raman Spectra of Clinical Staphylococcus Species

Jia-Wei Tang, Qing-Hua Liu, Xiao-Cong Yin, Ya-Cheng Pan, Peng-Bo Wen, Xin Liu, Xing-Xing Kang, Bing Gu, Zuo-Bin Zhu and Liang Wang

Front. Microbiol., 2021, 12
DOI: 10.3389/fmicb.2021.696921

Recent studies on advance spectroscopic techniques for the identification of microorganisms: A review

Muhammad Ramzan, Ali Raza, Zaib un Nisa and Syed Ghulam Musharraf

Arabian Journal of Chemistry, 2023, 16, 104521
DOI: 10.1016/j.arabjc.2022.104521

Mobile colistin resistance (mcr) genes and recent developments in colistin resistance detection

Divya Lakshmanan, Dhamodharan Ramasamy, Veni Subramanyam and Suresh Kumar Saravanan

Letters in Applied Microbiology, 2023, 76
DOI: 10.1093/lambio/ovad102

Next-generation physiology approaches to study microbiome function at single cell level

Roland Hatzenpichler, Viola Krukenberg, Rachel L. Spietz and Zackary J. Jay

Nat Rev Microbiol, 2020, 18, 241
DOI: 10.1038/s41579-020-0323-1

Spectroscopic investigation of faeces with surface-enhanced Raman scattering: a case study with coeliac patients on gluten-free diet

Stefano Fornasaro, Alessandro Esposito, Fiorella Florian, Alberto Pallavicini, Luigina De Leo, Tarcisio Not, Cristina Lagatolla, Marica Mezzarobba, Alessia Di Silvestre, Valter Sergo and Alois Bonifacio

Anal Bioanal Chem, 2022, 414, 3517
DOI: 10.1007/s00216-022-03975-y

The isolation strategy and chemical analysis of oil cells from Asari Radix et Rhizoma

Haibo Hu, Guangxue Liu and Yaoli Li

Plant Methods, 2024, 20
DOI: 10.1186/s13007-024-01184-5

Machine learning-assisted SERS approach enables the biochemical discrimination in Bcl-2 and Mcl-1 expressing yeast cells treated with ketoconazole and fluconazole antifungals

Ayşenur Guler, Asli Yilmaz, Nazli Oncer, Nurettin Ilter Sever, Sevilay Cengiz Sahin, Berna Kavakcıoglu Yardimci and Mehmet Yilmaz

Talanta, 2024, 276, 126248
DOI: 10.1016/j.talanta.2024.126248

Raman opportunities in the field of pathological calcifications

Ivan T. Lucas, Dominique Bazin and Michel Daudon

Comptes Rendus. Chimie, 2022, 25, 83
DOI: 10.5802/crchim.110