Issue 3, 2022

Predicting glass transition temperature and melting point of organic compounds via machine learning and molecular embeddings

Abstract

Gas-particle partitioning of secondary organic aerosols is impacted by particle phase state and viscosity, which can be inferred from the glass transition temperature (Tg) of the constituting organic compounds. Several parametrizations were developed to predict Tg of organic compounds based on molecular properties and elemental composition, but they are subject to relatively large uncertainties as they do not account for molecular structure and functionality. Here we develop a new Tg prediction method powered by machine learning and “molecular embeddings”, which are unique numerical representations of chemical compounds that retain information on their structure, inter atomic connectivity and functionality. We have trained multiple state-of-the-art machine learning models on databases of experimental Tg of organic compounds and their corresponding molecular embeddings. The best prediction model is the tgBoost model built with an Extreme Gradient Boosting (XGBoost) regressor trained via a nested cross-validation method, reproducing experimental data very well with a mean absolute error of 18.3 K. It can also quantify the influence of number and location of functional groups on the Tg of organic molecules, while accounting for atom connectivity and predicting different Tg for compositional isomers. The tgBoost model suggests the following trend for sensitivity of Tg to functional group addition: –COOH (carboxylic acid) > –C([double bond, length as m-dash]O)OR (ester) ≈ –OH (alcohol) > –C([double bond, length as m-dash]O)R (ketone) ≈ –COR (ether) ≈ –C([double bond, length as m-dash]O)H (aldehyde). We also developed a model to predict the melting point (Tm) of organic compounds by training a deep neural network on a large dataset of experimental Tm. The model performs reasonably well against the available dataset with a mean absolute error of 31.0 K. These new machine learning powered models can be applied to field and laboratory measurements as well as atmospheric aerosol models to predict the Tg and Tm of SOA compounds for evaluation of the phase state and viscosity of SOA.

Graphical abstract: Predicting glass transition temperature and melting point of organic compounds via machine learning and molecular embeddings

Supplementary files

Transparent peer review

To support increased transparency, we offer authors the option to publish the peer review history alongside their article.

View this article’s peer review history

Article information

Article type
Paper
Submitted
29 okt 2021
Accepted
02 apr 2022
First published
05 apr 2022
This article is Open Access
Creative Commons BY-NC license

Environ. Sci.: Atmos., 2022,2, 362-374

Predicting glass transition temperature and melting point of organic compounds via machine learning and molecular embeddings

T. Galeazzo and M. Shiraiwa, Environ. Sci.: Atmos., 2022, 2, 362 DOI: 10.1039/D1EA00090J

This article is licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported Licence. You can use material from this article in other publications, without requesting further permission from the RSC, provided that the correct acknowledgement is given and it is not used for commercial purposes.

To request permission to reproduce material from this article in a commercial publication, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party commercial publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements