Simon
Wheeler
a,
Colum
Breen
a,
Yong
Li
b,
Sarah H.
Hewitt
a,
Erin
Robertson
a,
Edwin A.
Yates
b,
Igor L.
Barsukov
b,
David G.
Fernig
b and
Stephen J.
Butler
*a
aDepartment of Chemistry, Loughborough University, Epinal Way, Loughborough, LE11 3TU, UK. E-mail: s.j.butler@lboro.ac.uk
bDepartment of Biochemistry, Institute for Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK
First published on 8th December 2021
Sulfotransferases constitute a ubiquitous class of enzymes which are poorly understood due to the lack of a convenient tool for screening their activity. These enzymes use the anion PAPS (adenosine-3′-phosphate-5′-phosphosulfate) as a donor for a broad range of acceptor substrates, including carbohydrates, producing sulfated compounds and PAP (adenosine-3′,5′-diphosphate) as a side product. We present a europium(III)-based probe that binds reversibly to both PAPS and PAP, producing a larger luminescence enhancement with the latter anion. We exploit this greater emission enhancement with PAP to demonstrate the first direct real-time assay of a heparan sulfate sulfotransferase using a multi-well plate format. The selective response of our probe towards PAP over structurally similar nucleoside phosphate anions, and over other anions, is investigated and discussed. This work opens the possibility of investigating more fully the roles played by this enzyme class in health and disease, including operationally simple inhibitor screening.
Heparan sulfotransferases mediate the attachment of a sulfate group to an atom (usually oxygen, though sometimes nitrogen) in the heparanosan/heparan sulfate polysaccharide (Scheme 1). They exist in numerous isoforms with varying substrate preferences.18 The sulfated products of this reaction play important roles in cell communication19 and also feature in various pathologies including those of cancer,20 Alzheimer's21 and the mucopolysaccharidoses.22 Heparan sulfotransferases belong to the wider group of sulfotransferases found across nature that use the universal sulfate donor compound PAPS (adenosine-3′-phosphate-5′-phosphosulfate),23 and produce PAP (adenosine-3′,5′-diphosphate) as a by-product (Scheme 1).
Scheme 1 Sulfotransferases add SO3− to hydroxyl or amino groups producing organic sulfates; PAPS functions as the donor yielding PAP as the by-product. |
Very few methods have been disclosed for monitoring directly the activity of carbohydrate sulfotransferases. Those that have require radio-labelled substrates24–26 or specialized, expensive equipment and acceptor substrates.27 The majority of published assays examine endpoints making the accurate determination of enzyme kinetics difficult and time consuming. Very few are adaptable to high throughput format, accounting for the small numbers of reports of inhibitors of these enzymes.24,28 Notably, a recent study by Eyers and co-workers demonstrated that sulfotransferases inhibitors can be identified in specialised high-throughput screens.27 This work highlights that such high-throughput acceptor-based ST assays are limited in the acceptors that can be used, so the range of sulfotransferases that can be studied is restricted. Further investigation of heparan sulfotransferases, including the vast potential of inhibitors as targets for drug discovery across a range of therapeutic areas, will likely remain slow unless an assay capable of both kinetic measurements and automated high throughput screening can be developed. We postulated that an assay based on emissive europium(III) probes could successfully fill this gap we had identified.
We recently developed a new class of cationic europium(III) complexes bearing a sterically demanding 8-(benzyloxy)quinoline pendant arm that chelates the Eu(III) ion, offering a single coordination site at the metal centre suitable for the monodentate binding of inorganic phosphate and AMP (adenosine monophosphate).29 We hypothesised that complexes of this design may be suitable for binding the structurally related phosphoanion, PAP, whilst showing a lower affinity for PAPS owing to the presence of the terminal cosulfate which would interact weakly with the hard Lewis acidic Eu(III) centre. Thus, we envisaged that PAP would induce a larger emission enhancement compared with PAPS or with any sulfated products, allowing us to monitor the PAP/PAPS ratio during the progress of the sulfotransferase reaction. Our approach to monitoring sulfotransferase activity differs from previous work in that we target the small phosphoanion co-factor and the by-product derived from it, whereas other efforts have targeted the sulfated macromolecules or use an indirect coupled assay. Supramolecular approaches utilising cucurbituril and calixarene host molecules have been developed for monitoring enzyme reactions, such as hydrolases and methyltransferases30–32 while we have previously used supramolecular anion recognition of phosphate-based species to monitor kinases.13,14 Here we report the initial results of our investigations into heparan sulfotransferases and disclose a europium(III)-based probe capable of monitoring one such enzyme in real-time, in principle independent of both substrate and product and so applicable to any sulfotransferase catalysed reaction.
Initially, we determined whether these two complexes could distinguish between PAP and PAPS by a differential luminescence response in 50 mM TRIS buffer at pH 7.4. Under these conditions, both anions induced an increase in overall emission intensity of the two complexes, with the largest emission change occurring in the ΔJ = 2 (605–630 nm) emission band. Gratifyingly, PAP enhanced the emission of both complexes more than PAPS, as we expected. Compound EupBOH2 offered higher discrimination (Fig. 1A) between PAP and PAPS, giving a 1.6-fold difference in emission intensity at 613 nm. For justification of our use of this wavelength rather than other measures of the level of discrimination see Fig. S1.† In comparison, the binding of PAPS and PAP to complex EuBn gave a slightly reduced discrimination of 1.4-fold at 613 nm (Fig. 1B).
Binding constants were determined for these complexes with PAP and PAPS in aqueous buffer at pH 7.4, by plotting the change in the intensity ratio of the ΔJ = 2/ΔJ = 1 bands against anion concentration and fitting the data to a 1:1 binding model. The binding titration data (Fig. S2†) indicated that there are only small differences in binding affinity of PAPS and PAP for either complex. Nevertheless, we considered our idea that substituents on the benzene ring affect anion discrimination to be vindicated and thus we set out to prepare a new complex EumNH2 functionalised with a meta-amino group on the benzene ring. Synthesis (Scheme 2) started with the alkylation of known33 phenol 1 with the requisite commercially available bromide followed by reduction of the resulting aldehyde 2 reduction to yield alcohol 3. Activation of this gave the slightly unstable mesylate ester which was thus used immediately in an alkylation reaction with known34 macrocycle to give protected ligand 4. Simultaneous deprotection of the tert-butyl esters and Boc group with TFA yielded the ligand 5 which was heated with EuCl3 to give our desired complex after purification by reverse-phase HPLC.
Photophysical characterisation of EumNH2 (Table 1, Fig. S3†) revealed a broad absorption band centred at 322 nm, identical to the unsubstituted complex EuBn and with a very similar extinction coefficient. The emission spectrum was also similar to EuBn, characterised by two components in the ΔJ = 1 (585–600 nm) emission band and three components in the ΔJ = 2 (605–630 nm) band. We suspected that the much lower quantum yield of EumNH2 and its smaller emission lifetime in water and D2O (Table 1, Table S1†) was caused by intramolecular photoinduced electron transfer (PET) from the nitrogen lone pair on the aniline ring quenching the europium excited state.
EupBOH2 | EuBn | EumNH2 | |
---|---|---|---|
a Quantum yields were calculated relative to quinine sulfate standard (Φem = 0.58); errors in quantum yields are ±20%. b Lifetime experiments conducted using 50 μM probe, λex = 322 nm, λem = 620 nm. c Hydration state, q, was estimated using literature methods (errors are ±20%). d Very short emission lifetimes prevented accurate estimation of the hydration state. | |||
λ max (nm) | 322 | 322 | 322 |
ε (M−1 cm−1) | 2900 | 2900 | 2500 |
Φ (%) | 1.2 | 1.5 | 0.3 |
τ H2O (ms) | 0.18 | 0.17 | 0.05 |
τ D2O (ms) | 0.25 | 0.23 | 0.07 |
q | 1.29 | 0.76 | —d |
Consistently, the emission from this complex was found to be highly pH-sensitive with much higher emission intensity observed at lower pH values (Fig. S6†). Further support for the involvement of the aniline nitrogen lone pair was the presence of an absorption band centred at 292 nm which is absent from the spectrum of the parent complex (compare Fig. S3 and S4†) and which disappears at low pH (Fig. S6†). We assign this band to an n → π* transition. We attribute the emission enhancement and spectral form changes observed above pH 8 (Fig. S6†) to the coordination of hydroxide, but importantly the emission spectrum is stable in the pH range 6–8, rendering this compound potentially suitable for sulfotransferase assays.
The emission lifetime of the parent and boronic acid complexes in water were similar and extended in D2O as expected (Table 1 and S1†), giving rise to an estimation35 of the number of bound water molecules, q, of 1 within experimental error. We interpret these non-integer values as suggesting dynamic behaviour of the bound waters, including interaction with outer sphere molecules. The emission lifetime of complex EumNH2 was much shorter, consistent with PET quenching by the aniline nitrogen lone pair. Estimation of the q value for such complexes becomes difficult as the emission lifetime begins to overlap with the water exchange timescale.35 It is nonetheless significant that the emission lifetime was longer in D2O suggesting that the complex is hydrated in the absence of anions. When the overall emission intensity was measured in D2O it was found to be 2.9 times higher than in H2O, consistent with energy transfer to O–H vibrations being a significant non-radiative quenching pathway (Fig. S6†).
We were pleased to discover that, despite being less emissive, the aniline complex EumNH2 outperformed both our initial boronic acid and unsubstituted benzene complex showing a 1.8-fold discrimination in emission between PAP and PAPS at 613 nm (Fig. 1C). Analysis of the anion binding titration data (Fig. S1†) indicated that EumNH2 has a genuine preference for binding PAP over PAPS (logKa = 4.0 and 3.5, respectively), albeit with a modest 5-fold selectivity for the former anion.
We wished to confirm our hypothesis that the phosphate groups in PAPS and PAP coordinate to the Eu(III) ion displacing the bound water, and are thus responsible for the observed enhancement in emission and change in spectral form. First, we measured the emission response of EumNH2 in the presence of a small range of anions and found that inorganic phosphate was unique in giving a significant increase in luminescence especially in the ΔJ = 2 band; other anions (sulfate, bicarbonate, nitrate, lactate and chloride) gave negligible changes in luminescence (Fig. S7†), indicating that these anions do not bind to EumNH2. Such high selectivity for phosphate was observed recently for structurally related Eu(III) receptors containing a bulky 8-(benzyloxy)quinoline pendant arm that chelates the Eu(III) ion, leaving a single coordination site for the phosphate binding.29
Other oxyanions that prefer a bidentate binding mode, including bicarbonate and lactate,36 do not bind to the receptors due to the steric hindrance imposed by the ligand, which blocks the ‘axial’ coordination site. The emission spectral form changes observed for EumNH2 in the presence of inorganic phosphate (Fig. S7†) matched that of PAP and PAPS, confirming that the phosphate-Eu(III) coordination is the primary interaction involved in the host–guest complexes involving PAP or PAPS.
It is possible that addition of PAP and PAPS also leads to suppression of PeT quenching, contributing to the overall enhancement in emission intensity.37,38 If blocking of PET, rather than water displacement, was the main mechanism for the emission response then we would expect similar emission enhancements on binding anions in H2O and D2O. In fact, we observed a 2.8-fold increase in overall intensity on binding PAP in H2O but only 1.3-fold in D2O; binding PAPS gave a 2.0-fold increase in H2O but only 1.2-fold in D2O (Fig. S6†). The smaller enhancements in emission in D2O can be attributed to reduced quenching effect of O–D versus O–H oscillators. Additionally, suppression of PET by lowering the pH did not lead to changes in spectral form (Fig. S6†) unlike binding anions (Fig. 1, 2 and S7†). We thus conclude that the emission enhancements seen with PAP and PAPS are predominantly due to displacement of bound water molecules, although modulation of the PET process may contribute to the overall increases in emission observed.
Fig. 2 Investigation of anion binding modes by analysis of changes in the emission intensity and spectral form of EumNH2. Emission enhancement occurs if the anion possesses either a 3′-phosphate (PAPS, 3′-AMP, CoA), a 5′-phosphate (5′-CoA) or both (PAP); the absence of both 3′- and 5′-phosphates (APS, dephospho-CoA) results in very limited emission enhancement. Experiments conducted using 5 μM Eu(III) complex, 250 μM anion in 50 mM TRIS at pH 7.4, 295 K. Very similar results were obtained for EupBOH2 and EuOBn (see Fig. S8†). |
We next examined a set of phosphorylated biomolecules structurally related to PAPS and PAP (Fig. 2). The molecules that contained a phosphate group (5′-AMP, 3′-AMP, CoA) together with PAPS and PAP all gave significant luminescence enhancements (at least 4-fold) at 613 nm. Structural analogues with a phosphate group bonded to an additional group but lacking an unconjugated phosphate (APS, dephospho-CoA) gave substantially lower enhancements in luminescence (ca. 2-fold). Similar trends in luminescence responses were obtained with the EupBOH2 and EuBn (Fig. S8†). Molecules with only one unconjugated phosphate group (PAPS, 5′-AMP, 3′-AMP, CoA) gave a smaller luminescence enhancement than PAP, which has two phosphates. We thus conclude that PAP coordinates the Eu(III) complexes through both its phosphate groups. Conjugated phosphates (APS, dephospho-CoA) are also able to associate with the europium(III) ion, but the resulting host–guest structures are significantly less emissive.
With a PAP-selective Eu(III) complex in hand and a good understanding of its photophysical properties in aqueous solution, we proceeded to apply it to monitoring a sulfation reaction. We first evaluated the effect of our model acceptor substrate, heparin, on the luminescence of EumNH2 and found that this heavily sulfated polysaccharide produced no change in the emission of the complex either alone or in the presence of PAPS or PAP (Fig. S9†). This is consistent with our finding discussed above that sulfate does not interact with our Eu(III) complex or affect its emission (Fig. S7†). The next step was to perform simulations of an enzyme reaction wherein our complexes were incubated with increasing molar ratios of PAP/PAPS, whilst keeping the total concentration of PAP and PAPS constant. In accord with the aim that our probes could ultimately be applied to high-throughput screening we conducted this work in 384-well plate format, taking advantage of the long emission lifetimes of the probes to record time-resolved measurements thereby increasing signal to noise ratio. All three Eu(III) complexes gave linear increases in time-resolved emission intensity of the ΔJ = 2 band (Fig. S10†) as the mole fraction of PAP increases. Furthermore, the extent of the emission increase (determined by the gradient) was consistent with the emission differences we observed in our earlier fluorimetry experiments (Fig. 1), confirming that our assay could transfer from quartz cuvette to polystyrene plate. These experiments also confirmed the aniline complex EumNH2 as our most responsive, and therefore preferred, probe.
Next, we prepared a heparan sulfotransferase HS3ST1 (tagged with glutathione-S-transferase (GST) for ease of purification, Fig. S11†) and incubated the recombinant enzyme with PAPS and an excess of porcine intestinal mucosal heparin, one of its natural substrates, in the presence of our probe. While heparin molecules have already been sulfated by this enzyme in vivo prior to its isolation we reasoned that, as with all HSST reactions, sulfation of acceptor sites (in this instance on the C3 hydroxyl of glucosamine residues) is only partial.39 Indeed, bovine intestinal heparin has been shown to be a substrate in vitro for this enzyme.40 We were delighted to observe a gradual increase in luminescence as PAPS was consumed and PAP was generated (Fig. 3). This demonstrates the ability of our Eu(III)-based anion receptor to function in a biological sulfation assay and thus renders the first example of real-time monitoring of a heparan sulfotransferase that is in principle independent of both substrate and product. Confirmation of the conversion of PAPS to PAP during the enzyme reaction was given by 1H NMR spectroscopy (Fig. S12†).
Whilst this work brings the carbohydrate sulfotransferases, which are known to be druggable targets,27 one step closer to high throughput inhibitor screening, our assay has some shortcomings. As noted above, the ability of the aniline nitrogen lone pair in EumNH2 to act as a quencher of the europium(III) excited state means that our most selective probe is only weakly emissive. Future work will further investigate the interaction of target anions with EumNH2, including a possible role for the amine group, and so attempt to design and synthesise molecules that combine the selectivity of EumNH2 with the higher inherent brightness of the boronic acid probe. These studies are underway in our laboratories and will be reported in due course.
NMR spectroscopy was carried out in the stated deuterated solvent using a JEOL ECS-400 (1H at 399.78 MHz, 13C at 100.53 MHz) or a JEOL–ECS-500 spectrometer (1H at 500.16 MHz, 13C at 125.77 MHz) spectrometer at 293 K. Chemical shifts are expressed in ppm and are adjusted to the chemical shift of the residual NMR solvent resonances (CDCl3: 1H δ = 7.26 ppm, 13C δ = 77.16 ppm or CD3OD: 1H δ = 3.31 ppm, 13C δ = 49.00 ppm).
All complexes were stored as 1 mM solutions in distilled water at −20 °C and diluted solutions prepared from these.
UV-Vis spectroscopy was performed using a Shimadzu UV-1800 instrument. Molar extinction coefficients were calculated using the Beer–Lambert law.
Luminescence spectroscopy was performed using a Camlin Photonics luminescence spectrometer with FluoroSENS version 3.4.7.2024 software. Emission spectra were obtained using a 40 μL Hellma® Analytics quartz cuvette with excitation at 322 nm and reading emission in the range 550–720 nm using an integration time of 0.1s, increment of 1 nm and excitation and emission slits of 0.5 nm.
Quantum yields were measured using quinine sulfate in 0.05 M H2SO4 as a standard (Φem = 0.58, λex = 350 nm).41 Plate-based assays were conducted in FisherBrand black, polystyrene 384-well plates with a maximum volume of 44 μL per well.
To a stirred solution of mesylate (445 mg, 0.95 mmol) in MeCN (40 mL) was added K2CO3 (394 mg, 2.85 mmol) followed by DO2A-tert butyl ester (380 mg, 0.95 mmol) and the mixture stirred at 60 °C for 18 hours. The reaction mixture was cooled and centrifuged. The liquours were decanted and the solid washed with DCM (2 × 10 mL). Combined liquids were evaporated to give a yellow gum which was purified by column chromatography over SiO2 (40 g) eluting with EtOAc then with 95:5:0.5 to 90:10:1 to 80:20:5 DCM/MeOH/880 NH3. Relevant fractions were combined and evaporated to yield product 4 as an off-white foam (513 mg, 0.67 mmol, 71%). 1H NMR (500 MHz, CD3OD): Compound 4 present as two rotamers in approximate ratio 4:1 1.37 and 1.48 (together 9H, s, H18, H27), 2.38–3.10 (20H, m, H20–24), 3.60 and 3.93 (together 2H, s, H19), 5.18 and 5.31 (together 2H, s, H9), 6.70–7.89 (9H, m, NH, H3, H4–7, H11, H13–15), 8.06 and 8.31 (together 1H, d, J = 8.5 Hz, H4). 13C NMR (126 MHz, CD3OD): some peaks doubled due to presence of rotamers 31.0 and 31.3 (C18 and C27), 47.8, 52.8, 53.4 and 57.4 (C20–23), 59.0 and 59.1 (C24), 63.8 and 64.6 (C19), 75.2 and 75.6 (C9), 83.7 and 85.1 (C26), 85.0 and 85.3 (C17) 114.3 and 115.2 (C7), 123.2 (C11), 123.5 (C13), 124.3 and 124.5 (C3), 127.5 and 127.6 (C15), 130.3 and 130.7 (C14), 132.3 and 132.6 (C4a), 132.8 and 133.4 (C6), 140.6 and 141.1 (C4), 141.4 (C10), 143.3 and 143.5 (C12), 144.3 (C8), 157.7 (two peaks, C2), 157.9 (C8a) 161.4 and 161.5 (C16), 174.7 and 174.9 (C25). HRMS: C42H62N6O7+ requires 763.4674, found 763.4753
Emission lifetime measurements were performed on the FluoroSENS instrument. Measurements were taken of 40 μL of 5 μM samples of Eu(III) complexes in 50 mM TRIS at pH 7.4. Measurements were obtained by indirect excitation of the Eu(III) ion via the quinoline antennae using a short pulse of light at 322 nm followed by monitoring the integrated intensity of the light emitted at 620 nm, with 500 data points collected over a 5 millisecond time period. The decay curves were plotted in Origin Labs 2019 version 9.6.0.172, and fitted to the equation:
I = A0 + A1e−kt | (1) |
The hydration state, q, of the Eu(III) complexes was determined using the modified Horrocks equation:35
q(Eu) = 1.2 (1/τH2O − 1/τD2O − 0.25 − 0.075n) | (2) |
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/d1ob02071d |
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