Sarah N.
Johnson
a,
Thomas L.
Ellington
a,
Duong T.
Ngo
a,
Jorge L.
Nevarez
a,
Nicholas
Sparks
a,
Arnold L.
Rheingold
b,
Davita L.
Watkins
*a and
Gregory S.
Tschumper
*a
aDepartment of Chemistry and Biochemistry, University of Mississippi, University, Mississippi 38677-1848, USA. E-mail: tschumpr@olemiss.edu; Fax: +1 662 915 7300; Tel: +1 662 915 7301
bDepartment of Chemistry, University of California, San Diego, La Jolla, California 92093-0358, USA
First published on 14th March 2019
Recent advancements in material science exploit non-covalent interactions, such as halogen bonding (XB) or π-stacking within solid-state molecular frameworks for application in organic electronic devices. Herein, we focus on these and other non-covalent interactions and the effect that furan and thiophene substituents play on the solid-state properties of co-crystals formed between pentafluoro(iodoethynyl)benzene (F5BAI; XB donor) and a pyridine disubstituted with either furans or thiophenes (PyrFur2 and PyrThio2; XB acceptors). Spectroscopic and thermal analyses of 1:1 mixtures provide indirect evidence of XB interactions, whereas X-ray crystallography provides direct evidence that XB and π-stacking are present in both co-crystals. Density functional theory (DFT) computations provide insight into the relative electronic energetics of each pair-wise contact observed in the experimental F5BAI-PyrFur2 and F5BAI-PyrThio2 co-crystals.
The incorporation of halogen bonding as an intermolecular interaction is ever-growing throughout the literature.22–24 As formally defined by the International Union of Pure and Applied Chemistry (IUPAC), a halogen bond (XB) is a net attractive interaction between an electrophilic region associated with a halogen atom in a molecular entity and a nucleophilic region in another, or the same molecular entity.25 The formation of such an interaction occurs due to the anisotropic redistribution of electron density upon the formation of a covalent bond between the halogen atom (X) and a neighboring atom (C–X).26–29 This polarization can produce a region of depleted electron density that is aligned with the C–X bond (i.e., the σ-hole).28–30 These areas can have a positive electrostatic potential allowing for the formation of an attractive and highly directional intermolecular interaction with a nucleophilie whose magnitude is on order with a typical hydrogen bond (ca. 5 kcal mol−1).27,31 Here we use the term “XB” to describe the attractive interaction between the σ-hole of a halogen-containing molecule (XB donor) and an electron rich region of a neighboring Lewis base (XB acceptor), typically in the form of the lone pair(s) from a pnicogen or chalcogen atom.25 In addition to the inherent strength and directionality of these interactions, the XB can be tuned via modification of (i) the halogen atoms polarizability through its identity (I > Br > Cl ≫ F) and/or (ii) electron withdrawing ability of the XB donor, which makes the XB a powerful addition to crystal growth and design.31–33 Perhaps most important is the overarching idea that the distribution of electron density across the entire XB complex plays a pivotal role when investigating solid-state molecular assemblies.22,34
Herein, we report the analysis of single crystal structural data for a series of co-crystals comprised of self-assembling optoelectronic building blocks and an iodoethynyl benzene derivative. Fig. 1 shows the chemical structure of the three molecules of study. Initially prepared as oligomeric moieties for the construction of single crystal organic semiconducting devices, the truncated pyridine-based derivatives (PyrFur2 and PyrThio2) were employed as XB acceptors. The core nitrogen containing heterocycle (Pyr) acts as a synthetically accessible Lewis base capable of donating electrons to the XB complexation. The furan (Fur) and thiophene (Thio) units represent traditional building blocks used in material science.35 Based on semiconducting properties, thiophene is widely accepted as a better electron donor while furan has been reported to yield more planar geometries due to the reduced size of the oxygen atom in comparison to that of the sulfur.36 The effects of the structural diversity lead to uniquely different chemical and physical properties that are often varied depending on solid-state arrangement.37,38
The well established XB donor, 1,2,3,4,5-pentafluoro(iodoethynyl)benzene (F5BAI, i.e. F5C8I) contains a highly polarizable iodine atom with a significant region of positive electrostatic potential on the outermost portion of its surface.30,39 The capacity for XBing at the iodine atom is enhanced by the sp hybridization of the adjacent carbon (i.e., C–I) as well as an inductive effect provided by the fluoro substituents.40 Together the components that make up the XB acceptor and donor induce self-assembly yielding highly directional XB complexes which also stack via π-type interactions. As suggested in the naming scheme, the F5BAI-PyrFur2 co-crystal contains the PyrFur2 XB acceptor (i.e. NO2C13H9), while F5BAI-PyrThio2 contains the PyrThio2 XB acceptor (i.e. NS2C13H9). In order to quantify the planarity for the furan and thiophene substituents within the PyrFur2 and PyrThio2 XB acceptors, two torsional angles τα and τβ are defined by the atom labels C4–C3–Cα–Yα and C4–C5–Cβ–Yβ, respectively, in Fig. 1 where Y is either O or S. Nearest neighbor pair-wise intermolecular interactions identified in the two co-crystals via X-ray crystallography are quantified with the application of density functional theory (DFT) computations.
Further analysis of the thermogravimetric (TGA) data for the co-crystals reveals dual step decomposition patterns indicating the presence of two complex species (Fig. S3†). Similar trends are observed for neat XB acceptors and co-crystals where furan-based materials have lower decomposition temperatures than those consisting of thiophene. This is an innate property of the material that has been well documented in the literature.58,59 Notably, the decomposition temperatures for each co-crystal are within 52–97 °C lower than those observed for each neat XB acceptor. F5BAI-PyrFur2 and F5BAI-PyrThio2 exhibit initial decomposition temperatures of 107 °C and 111 °C, respectively. These results indicate that the interactions within the neat XB acceptors are presumed to be much stronger than those within the XB complexes.
Co-crystal | F 5 BAI-PyrFur 2 | F 5 BAI-PyrThio 2 |
---|---|---|
Formula | C21H9F5INO2 | C21H9F5INS2 |
M (g mol−1) | 529.2 | 561.3 |
Temperature (K) | 200.0 | 100.0 |
Space group | P | P21/c |
a (Å) | 8.698(15) | 11.921(3) |
b (Å) | 10.499(15) | 16.418(4) |
c (Å) | 12.215(2) | 10.642(2) |
α (°) | 86.92 | 90.00 |
β (°) | 70.76 | 104.41 |
γ (°) | 68.53 | 90.00 |
V (Å3) | 977.2 | 2017.3 |
Z | 2 | 4 |
R factor (%) | 3.81 | 2.34 |
The only configuration of PyrFur2 observed in the co-crystal structure is almost perfectly planar with magnitudes of τα and τβ (depicted in Fig. 1) falling near 3°, which indicates both chalcogens have adopted orientations away from the nitrogen atom of the central pyridine ring as seen throughout Fig. 2. Full geometry optimizations at the M06-2X/aug-cc-pVTZ-PP level of theory indicate several different configurations of PyrFur2 have similar electronic energies (reported in the ESI†). A Cs configuration with τα = 0° and τβ = 180° lies only +0.15 kcal mol−1 above the C2v configuration with τα and τβ = 0°. The XB interaction between the pyridyl nitrogen and iodine atoms is characterized by a nearly linear N⋯I–C angle of 175° and a N⋯I distance (2.74 Å) that is 34.3% less than the sum of their van der Waals radii of nitrogen (1.79 Å) and iodine (2.38 Å) as seen in Table 2.60
Co-crystal | X⋯N | C–X⋯N | van der Waals reduction |
---|---|---|---|
F 5 BAI-PyrFur 2 | 2.74 | 175.1 | 34.3 |
F 5 BAI-PyrThio 2 | 2.70 | 179.3 | 35.3 |
Three other pair-wise contacts are listed on the right side of Fig. 2, all of which are π-stacking interactions. One of the π-stacking interactions is heterogeneous, meaning it contains one XB donor molecule and one XB acceptor molecule. This contact has an intermolecular distance of 4.18 Å, which corresponds to the geometric center of the 6-membered benzene ring in the F5BAI XB donor and the equivalent pyridine center in the PyrFur2 XB acceptor. The other two π-stacking interactions are homogeneous, containing either two XB donor molecules or two XB acceptor molecules. The XB donor homogeneous π-stacking interaction has an intermolecular distance of 5.01 Å, while the XB acceptor homogeneous π-stacking interaction has an intermolecular distance of 3.53 Å (both of which are distances between the geometric centers of the 6-membered rings). Seventeen other unique contacts were also identified in the F5BAI-PyrFur2 co-crystal and are depicted in Fig. S5 of the ESI.†
Comparatively, the 1:1 assembly of the F5BAI-PyrThio2 co-crystal exhibits a monoclinic structure with the P21/c space group (Fig. 3). XB donors and acceptors align in an alternating fashion along the c-axis to form XB dimers, which in turn pack antiparallel to each other along the a-axis. The F5BAI-PyrThio2 co-crystal exhibits crystallographic disorder with two fundamentally different configurations of the PyrThio2 XB acceptor. The crystallographic disorder reveals itself as a 60% partial occupancy for a configuration with the sulfur atoms of the thiophene rings oriented in opposite directions, one pointing towards and the other away from the nitrogen atom of the central pyridine ring (e.g., τα ≈ 170° and τβ ≈ 25°, as depicted in Fig. 1c). The other configuration has 40% partial occupancy in which both sulfur atoms are pointing towards the nitrogen atom on pyridine (τα and τβ ≈ 165°). The 60% occupancy configuration (sulfur atoms oriented in opposite directions) is discussed in the text, whereas all configurations are fully reported in the ESI.† As with PyrFur2, full geometry optimizations of PyrThio2 identify several energetically competitive configurations. However, the energy differences are even smaller. The two lowest energy configurations are separated by only +0.05 kcal mol−1 at the M06-2X/aug-cc-pVTZ-PP level of theory (one configuration with τα and τβ ≈ 27° and the other with τα ≈ 154° and τβ ≈ 27°). In light of the small conformational energy differences computed for both pyridine fragments, the orientations observed in the crystal structures suggest that local environmental effects in the solid state likely influence the configurations adopted by the XB acceptors. A more detailed conformational analysis is underway to better understand these subtle structural differences between the two systems. Similarly to the F5BAI-PyrFur2 co-crystal, a XB interaction is observed in the F5BAI-PyrThio2 co-crystal where the N⋯I–C angle is 179° and the N⋯I distance is 2.70 Å corresponding to a 35.3% bond shortening relative to the total van der Waals radii of nitrogen and iodine (Table 2).60 The three types of π-stacking (heterogeneous, homogeneous with two XB donors and homogeneous with two XB acceptors) are also seen in the F5BAI-PyrThio2 co-crystal (right side of Fig. 3), and have the same type of intermolecular distances as seen in the F5BAI-PyrFur2 co-crystal (distances between geometric centers of 6-membered rings).
The heterogeneous π-stacking has an intermolecular distance of 3.68 Å, which is 0.5 Å less than that of F5BAI-PyrFur2. The two homogeneous π-stacking have intermolecular distances that are very similar to those seen in the F5BAI-PyrFur2 co-crystal, with deviations of −0.04 Å for the two XB donor molecules and −0.01 Å for the two XB acceptor molecules. Sixteen other unique contacts were also identified in the F5BAI-PyrThio2 co-crystal and are depicted in Fig. S6 of the ESI.†
Interaction | F 5 BAI-PyrFur 2 | F 5 BAI-PyrThio 2 | ||||
---|---|---|---|---|---|---|
E int | E CPint | E avgint | E int | E CPint | E avgint | |
XB | −7.6 | −7.5 | −7.6 | −7.5 | −7.4 | −7.4 |
Donor–acceptor π-stack | −7.3 | −6.3 | −6.8 | −9.5 | −8.3 | −8.9 |
Donor–donor π-stack | −7.7 | −6.6 | −7.2 | −8.7 | −7.5 | −8.1 |
Acceptor acceptor π-stack | −8.7 | −7.9 | −8.3 | −11.7 | −10.9 | −11.3 |
The F5BAI-PyrFur2 co-crystal has a XB interaction of −7.6 kcal mol−1 (Eavgint) and three different types of π-stacking interactions (heterogeneous, homogeneous with two XB donors and homogeneous with two XB acceptors as previously defined and shown in Fig. 2) ranging from −6.8 kcal mol−1 to −8.3 kcal mol−1. The heterogeneous π-stacking has the smallest average interaction energy of −6.8 kcal mol−1, whereas the homogeneous π-stacking types are −7.2 kcal mol−1 and −8.3 kcal mol−1 for the two XB donors and two XB acceptors, respectively. All of the other interactions within this co-crystal were less than 2.1 kcal mol−1 and correspond to various heterogeneous and homogeneous edge–edge and slipped π-stacking arrangements. Interaction energies, structures and Cartesian coordinates for all twenty-one pair-wise contacts of the F5BAI-PyrFur2 co-crystal are reported in Fig. S5, Tables S2, and S24–S44† within the ESI.†
The F5BAI-PyrThio2 co-crystal has a XB interaction of −7.4 kcal mol−1, which is nearly isoenergetic with that of the F5BAI-PyrFur2 co-crystal (within 0.2 kcal mol−1). This co-crystal also exhibits the same three types of π-stacking (heterogeneous, homogeneous with two XB donors and homogeneous with two XB acceptors) ranging from −8.1 kcal mol−1 to −11.3 kcal mol−1. Similar to the F5BAI-PyrFur2 co-crystal, the π-stacking interactions identified in the F5BAI-PyrThio2 co-crystal are larger than the corresponding XB interaction, however in this case, the energetic difference exceeds 3.5 kcal mol−1. Moreover, the homogeneous π-stacking interaction between two XB acceptors is significantly larger than that of the F5BAI-PyrFur2 co-crystal (−8.3 kcal mol−1vs. −11.3 kcal mol−1). This is most likely due to the fact that sulfur is far more polarizable than oxygen. All of the other interactions within this co-crystal were less than 2.1 kcal mol−1 and correspond to various heterogeneous and homogeneous edge–edge, slipped π-stacking and herringbone arrangements. Interaction energies, structures and Cartesian coordinates for all twenty pair-wise contacts of the F5BAI-PyrThio2 co-crystal are reported in Fig. S6–S9, Tables S3–S6 and S45–S124 within the ESI,† for all the configurations of PyrThio2.
Additionally, the effects of the assigned hydrogen atom positions in the crystal structures on the computed interaction energies have been examined by a series of constrained geometry optimizations. For all 41 fragment pairs discussed in this section, the positions of the hydrogen atoms were optimized at the M06-2X/aug-cc-pVDZ-PP level of theory while fixing the coordinates of all other atoms. This procedure introduced only small changes to the interaction energies (all of which can be found in the ESI†). For the pair-wise interactions in the F5BAI-PyrFur2 co-crystal, the absolute change to Eavgint was less than 0.1 kcal mol−1 on average. The maximum absolute deviation for the 21 F5BAI-PyrFur2 pairs is 0.41 kcal mol−1 (corresponding to a relative absolute difference of 4% in a strongly interacting pair), and the maximum relative absolute deviation is 19% (corresponding to an absolute different of 0.04 kcal mol−1 in a weakly interacting pair). The effect of optimizing the hydrogen atom positions is even smaller in the 20 F5BAI-PyrThio2 pairs that have been examined. The maximum absolute change to Eavgint was only 0.23 kcal mol−1 which also corresponds to the largest relative absolute difference (15%) observed in these systems. These results suggest that refining the hydrogen atom positions would have only a minor effect on the M06-2X/aug-cc-pVTZ-PP interaction energies reported in Table 3 and the ESI.†
Even though both XB acceptors contain the same basic structure resulting in very similar interactions, the conformations adopted by the furan and thiophene substituents are quite different in the co-crystals. The PyrFur2 XB acceptor only adopts a single, nearly planar configuration (τα and τβ ≈ 3°) with the oxygen atoms of both furan substituents pointing away from the nitrogen atom of the central pyridine ring as depicted in Fig. 1b. In contrast, the F5BAI-PyrThio2 co-crystal exhibits crystallographic disorder with two different configurations of the XB acceptor. In the somewhat more prevalent configuration of the PyrThio2 fragment (60% occupancy) the sulfur atoms of the thiophene rings are essentially oriented in opposite directions with one pointing towards and the other away from the nitrogen atom of the pyridine (e.g., τα ≈ 170° and τβ ≈ 25°). In the less common configuration (40% occupancy), both sulfur atoms are directed towards the nitrogen atom of pyridine (τα and τβ ≈ 165°). Additionally, the PyrThio2 XB acceptor is far less planar in its co-crystal than PyrFur2 as indicated by the chalcogen torsional angles (τα and τβ). A detailed conformational analysis is currently underway in order to better understand these conformational preferences.
Both systems have nearly identical interaction energies associated with the XB pair-wise contacts (Eavgint = −7.5 ± 0.1 kcal mol−1). In both systems, the only other sizeable interactions are the hetero- and homogeneous π-type stacking interactions between the XB donor and XB acceptor units. In F5BAI-PyrFur2 co-crystal, these pair-wise stacking interactions are quite similar in magnitude to the XB contact (Eavgint ranging from −6.8 to −8.3 kcal mol−1), whereas they are noticeably larger in the F5BAI-PyrThio2 co-crystal (Eavgint ranging from −8.1 to −11.3 kcal mol−1), likely due to the enhanced polarizability of the sulfur atoms in thiophene compared to the oxygen atoms in furan. All of the other pair-wise interaction energies analyzed had appreciably smaller magnitudes (Eavgint typically less than −1.0 kcal mol−1 and never exceeding −2.1 kcal mol−1).
Footnote |
† Electronic supplementary information (ESI) available: Including additional synthetic details, summary of theoretical calculations, structural figures, TG/DTZ plots, and X-ray crystallographic tables containing bond distances and angles. CCDC 1876245 and 1876246. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c9ce00219g |
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