A rationally designed metal-binding helical peptoid for selective recognition processes

Maria Baskin and Galia Maayan

Chem. Sci., 2016, 7, 2809
DOI: 10.1039/C5SC04358A

Structural insights into copper and zinc binding to tau protein and the impact of metal binding on amyloid aggregation

Gerardo U. Juárez-Romero, Xun Sun, Juan Atilio Gerez, Christophe Den Auwer, Gautier Landrot, Maarten Nachtegaal, Roland Riek, Jinghui Luo and Liliana Quintanar

Chem. Sci., 2026, 17, 7277
DOI: 10.1039/D5SC08604C

[(H2O)Zn(Imidazole)n]2+: the vital roles of coordination number and geometry in Zn–OH2acidity and catalytic hydrolysis

Douglas P. Linder, Brett E. Baker and Kenton R. Rodgers

Phys. Chem. Chem. Phys., 2018, 20, 24979
DOI: 10.1039/C8CP03121E

Heteroleptic complexesviasolubility control: examples of Cu(ii), Co(ii), Ni(ii) and Mn(ii) complexes based on the derivatives of terpyridine and hydroxyquinoline

Maria Baskin, Natalia Fridman, Monica Kosa and Galia Maayan

Dalton Trans., 2017, 46, 15330
DOI: 10.1039/C7DT03387G

A variety of roles for versatile zinc in metallo-β-lactamases

A. I. Karsisiotis, C. F. Damblon and G. C. K. Roberts

Metallomics, 2014, 6, 1181
DOI: 10.1039/C4MT00066H

The dynamics of zinc sites in proteins: electronic basis for coordination sphere expansion at structural sites

A. Gerard Daniel and Nicholas P. Farrell

Metallomics, 2014, 6, 2230
DOI: 10.1039/C4MT00213J

Investigation on the metal binding sites of a putative Zn(ii) transporter in opportunistic yeast species Candida albicans

Denise Bellotti, Dorota Łoboda, Magdalena Rowińska-Żyrek and Maurizio Remelli

New J. Chem., 2018, 42, 8123
DOI: 10.1039/C8NJ00533H

Nutrient metal elements in plants

Giovanni DalCorso, Anna Manara, Silvia Piasentin and Antonella Furini

Metallomics, 2014, 6, 1770
DOI: 10.1039/C4MT00173G

Metal coordination of ferrocene–histidine conjugates

Annaleizle Ferranco, Shibaji Basak, Alan Lough and Heinz-Bernhard Kraatz

Dalton Trans., 2017, 46, 4844
DOI: 10.1039/C7DT00456G

Structural and computational insights into the versatility of cadmium binding to proteins

Ran Friedman

Dalton Trans., 2014, 43, 2878
DOI: 10.1039/C3DT52810C

MetalKB: Predicting Metal Binding Sites on Proteins with a Knowledge-Based Graph Framework

Xuejun Zhao, Hao Li and Sheng-You Huang

J. Chem. Inf. Model., 2026, 66, 4322
DOI: 10.1021/acs.jcim.6c00453

Roles of zinc and zinc transporters in development, progression, and treatment of inflammatory bowel disease (IBD)

S. B. Mitchell and T. B. Aydemir

Front. Nutr., 2025, 12
DOI: 10.3389/fnut.2025.1649658

Interaction Energies in Complexes of Zn and Amino Acids: A Comparison of Ab Initio and Force Field Based Calculations

Emma Ahlstrand, Kersti Hermansson and Ran Friedman

J. Phys. Chem. A, 2017, 121, 2643
DOI: 10.1021/acs.jpca.6b12969

2,6-Diaminopurine-zinc complex for primordial carbon dioxide fixation

Balaram Mohapatra, Pratibha, R. Kamal Saravanan and Sandeep Verma

Inorganica Chimica Acta, 2019, 484, 167
DOI: 10.1016/j.ica.2018.09.041

Zinc Coordination Spheres in Protein Structures

Mikko Laitaoja, Jarkko Valjakka and Janne Jänis

Inorg. Chem., 2013, 52, 10983
DOI: 10.1021/ic401072d

New azo-azomethine based copper(II) and zinc(II) complexes: Synthesis, electrochemistry, photoluminescence properties, density functional theory calculations and molecular docking

Fatih Purtaş, Koray Sayin, Gokhan Ceyhan, Muhammet Kose and Mukerrem Kurtoglu

Journal of Molecular Structure, 2023, 1291, 135991
DOI: 10.1016/j.molstruc.2023.135991

Crystal Chemistry of Zinc Quinaldinate Complexes with Pyridine-Based Ligands

Barbara Modec

Crystals, 2018, 8, 52
DOI: 10.3390/cryst8010052

The inhibitory effect of the amino acid complexes of Zn(II) on the growth of Aspergillus flavus and aflatoxin B1 production

Marzieh Daryanavard and Nafiseh Jarrah

J IRAN CHEM SOC, 2019, 16, 1053
DOI: 10.1007/s13738-018-01581-3

Synthesis, characterization, and biological evaluation of a novel Zn(II)-Naproxen complex

Yi-Chun Chu, Tian-Tian Wang, Lin-Jian Wang, Qing-Yang Luo, Ru Jia, Tao-Cheng Hong, Xiao-Ming Wang and Hai-Liang Zhu

Polyhedron, 2019, 163, 71
DOI: 10.1016/j.poly.2019.01.040

Biochemistry of Mobile Zinc and Nitric Oxide Revealed by Fluorescent Sensors

Michael D. Pluth, Elisa Tomat and Stephen J. Lippard

Annu. Rev. Biochem., 2011, 80, 333
DOI: 10.1146/annurev-biochem-061009-091643

Characterization of the SUMO-Binding Activity of the Myeloproliferative and Mental Retardation (MYM)-Type Zinc Fingers in ZNF261 and ZNF198

Catherine M. Guzzo, Alison Ringel, Eric Cox, Ijeoma Uzoma, Heng Zhu, Seth Blackshaw, Cynthia Wolberger, Michael J. Matunis and Anja-Katrin Bielinsky

PLoS ONE, 2014, 9, e105271
DOI: 10.1371/journal.pone.0105271

Analyses of cobalt–ligand and potassium–ligand bond lengths in metalloproteins: trends and patterns

Natércia F. Brás, António J. M. Ribeiro, Marina Oliveira, Nathália M. Paixão, Juan A. Tamames, Pedro A. Fernandes and Maria J. Ramos

J Mol Model, 2014, 20
DOI: 10.1007/s00894-014-2271-z

Relationship between Enzyme/Substrate Properties and Enzyme Efficiency in Hydrolases

Sérgio F. Sousa, Maria J. Ramos, Carmay Lim and Pedro A. Fernandes

ACS Catal., 2015, 5, 5877
DOI: 10.1021/acscatal.5b00923

From quantum‐derived principles underlying cysteine reactivity to combating the COVID‐19 pandemic

Karine Mazmanian, Ting Chen, Karen Sargsyan and Carmay Lim

WIREs Comput Mol Sci, 2022, 12
DOI: 10.1002/wcms.1607

Intercommunication between metal ions and amyloidogenic peptides or proteins in protein misfolding disorders

Jong-Min Suh, Mingeun Kim, Jeasang Yoo, Jiyeon Han, Cinthya Paulina and Mi Hee Lim

Coordination Chemistry Reviews, 2023, 478, 214978
DOI: 10.1016/j.ccr.2022.214978

Screening a library of potential competitive inhibitors against bacterial threonyl-tRNA synthetase: DFT calculations

Mohamed M. Aboelnga and James W. Gauld

Journal of Biomolecular Structure and Dynamics, 2024, 42, 13555
DOI: 10.1080/07391102.2023.2276878

The Mechanochemistry of a Structural Zinc Finger

Judit Perales-Calvo, Ainhoa Lezamiz and Sergi Garcia-Manyes

J. Phys. Chem. Lett., 2015, 6, 3335
DOI: 10.1021/acs.jpclett.5b01371

Zinc in soil-plant-human system: A data-analysis review

Natasha Natasha, Muhammad Shahid, Irshad Bibi, Jibran Iqbal, Sana Khalid, Behzad Murtaza, Hafiz Faiq Bakhat, Abu Bakr Umer Farooq, Muhammad Amjad, Hafiz Mohkum Hammad, Nabeel Khan Niazi and Muhammad Arshad

Science of The Total Environment, 2022, 808, 152024
DOI: 10.1016/j.scitotenv.2021.152024

The Hexahistidine Motif of Host-Defense Protein Human Calprotectin Contributes to Zinc Withholding and Its Functional Versatility

Toshiki G. Nakashige, Jules R. Stephan, Lisa S. Cunden, Megan Brunjes Brophy, Andrew J. Wommack, Brenna C. Keegan, Jason M. Shearer and Elizabeth M. Nolan

J. Am. Chem. Soc., 2016, 138, 12243
DOI: 10.1021/jacs.6b06845

Formation of Unstable and very Reactive Chemical Species Catalyzed by Metalloenzymes: A Mechanistic Overview

Henrique S. Fernandes, Carla S. Silva Teixeira, Sérgio F. Sousa and Nuno M. F. S. A. Cerqueira

Molecules, 2019, 24, 2462
DOI: 10.3390/molecules24132462

Genomic Regions and Candidate Genes for Seed Iron and Seed Zinc Accumulation Identified in the Soybean ‘Forrest’ by ‘Williams 82’ RIL Population

Nacer Bellaloui, Dounya Knizia, Jiazheng Yuan, Qijian Song, Frances Betts, Teresa Register, Earl Williams, Naoufal Lakhssassi, Hamid Mazouz, Henry T. Nguyen, Khalid Meksem, Alemu Mengistu and My Abdelmajid Kassem

IJPB, 2024, 15, 452
DOI: 10.3390/ijpb15020035

New perspectives of zinc coordination environments in proteins

Wolfgang Maret

Journal of Inorganic Biochemistry, 2012, 111, 110
DOI: 10.1016/j.jinorgbio.2011.11.018

Synthesis, characterization and biological evaluation of naproxen Cu(II) complexes

Yi-Chun Chu, Tian-Tian Wang, Xiang-Yu Ge, Peng-Hao Yang, Wei Li, Jing Zhao and Hai-Liang Zhu

Journal of Molecular Structure, 2019, 1178, 564
DOI: 10.1016/j.molstruc.2018.10.068

Carbonic anhydrase inhibitory properties of novel benzylsulfamides using molecular modeling and experimental studies

Süleyman Göksu, Ali Naderi, Yusuf Akbaba, Pınar Kalın, Akın Akıncıoğlu, İlhami Gülçin, Serdar Durdagi and Ramin Ekhteiari Salmas

Bioorganic Chemistry, 2014, 56, 75
DOI: 10.1016/j.bioorg.2014.07.009

PinMyMetal: a hybrid learning system to accurately model transition metal binding sites in macromolecules

Huihui Zhang, Juanhong Zhong, Michal Gucwa, Yishuai Zhang, Haojie Ma, Lei Deng, Longfei Mao, Wladek Minor, Nasui Wang and Heping Zheng

Nat Commun, 2025, 16
DOI: 10.1038/s41467-025-57637-5

Zinc as Allosteric Ion Channel Modulator: Ionotropic Receptors as Metalloproteins

Francisco Peralta and Juan Huidobro-Toro

IJMS, 2016, 17, 1059
DOI: 10.3390/ijms17071059

Rubredoxins derivatives: Simple sulphur-rich coordination metal sites and its relevance for biology and chemistry

Biplab K. Maiti, Rui M. Almeida, Isabel Moura and José J.G. Moura

Coordination Chemistry Reviews, 2017, 352, 379
DOI: 10.1016/j.ccr.2017.10.001

Synthesis, characterization, crystal structure and DNA-binding studies of two zinc(II) complexes with the V-shaped bis(benzimidazole)-thiapropane and its derivative ligand

Hui-Lu Wu, Kai-Tong Wang, Bin Liu, Fan Kou, Fei Jia, Jing-Kun Yuan and Ying Bai

Inorganica Chimica Acta, 2012, 384, 302
DOI: 10.1016/j.ica.2011.12.020

Assessing the role of zinc in the structure-stability-activity paradigm of bacteriophage T7 endolysin

Manikyaprabhu Kairamkonda, Khushboo Gulati, Sandra Jose, Mayur Ghate, Harshi Saxena, Meenakshi Sharma and Krishna Mohan Poluri

Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2025, 341, 126466
DOI: 10.1016/j.saa.2025.126466

Effects of Zinc Oxide Nanoparticles on Growth and Secondary Metabolite Accumulation in In Vitro Culture of Ocimum basilicum L.

Funda Yılmaz Baydu and Ersan Bektaş

Journal of Apitherapy and Nature, 2025, 8, 37
DOI: 10.35206/jan.1464551

Identifying Zn-Bound Histidine Residues in Metalloproteins Using Hydrogen–Deuterium Exchange Mass Spectrometry

Jia Dong, Katie L. Callahan, Nicholas B. Borotto and Richard W. Vachet

Anal. Chem., 2014, 86, 766
DOI: 10.1021/ac4032719

Reviewing zinc in soils and wheat grain in Serbia: Is there a risk of deficiency in human wheat-based diets?

Jasna Savić, Marija Knez, Jelena Maksimović and Marija Radović

Ratar i povrt, 2025, 62, 54
DOI: 10.5937/ratpov62-56696

How First Shell–Second Shell Interactions and Metal Substitution Modulate Protein Function

Karine Mazmanian, Todor Dudev and Carmay Lim

Inorg. Chem., 2018, 57, 14052
DOI: 10.1021/acs.inorgchem.8b01029

Chasing high and stable wheat grain mineral content: Mining diverse spring genotypes under induced drought stress

Yuzhou Lan, Ramune Kuktaite, Aakash Chawade, Eva Johansson and Sindhu Sareen

PLoS ONE, 2024, 19, e0298350
DOI: 10.1371/journal.pone.0298350

Roles of the Active Site Zn(II) and Residues in Substrate Discrimination by Threonyl-tRNA Synthetase: An MD and QM/MM Investigation

Mohamed M. Aboelnga and James W. Gauld

J. Phys. Chem. B, 2017, 121, 6163
DOI: 10.1021/acs.jpcb.7b03782

Activation Free Energy, Substrate Binding Free Energy, and Enzyme Efficiency Fall in a Very Narrow Range of Values for Most Enzymes

Sérgio F. Sousa, Ana R. Calixto, Pedro Ferreira, Maria J. Ramos, Carmay Lim and Pedro A. Fernandes

ACS Catal., 2020, 10, 8444
DOI: 10.1021/acscatal.0c01947

Interaction of chemically modified tetracyclines with catalytic Zn(II) ion in matrix metalloproteinase: evidence for metal coordination sites

Bruna L. Marcial, Luiz Antônio S. Costa, Wagner B. De Almeida, Cleber P. A. Anconi and Hélio F. Dos Santos

Theor Chem Acc, 2011, 128, 377
DOI: 10.1007/s00214-010-0881-9

Trinuclear zinc complexes for biologically relevant μ3-oxoanion binding and carbon dioxide fixation

Xiao Liu, Pingwu Du and Rui Cao

Nat Commun, 2013, 4
DOI: 10.1038/ncomms3375

Zn(II)-formate Framework of mab topology: Synthesis from tea extract, electronic structure, and DNA-binding

Mithun Kumar Ghosh, Aditya Moktan Tamang, Sandip Kumar Chandraker, Suranjan Sikdar, Barun Jana and Tanmay Kumar Ghorai

Journal of Molecular Structure, 2022, 1270, 133913
DOI: 10.1016/j.molstruc.2022.133913

AutoDock4Zn: An Improved AutoDock Force Field for Small-Molecule Docking to Zinc Metalloproteins

Diogo Santos-Martins, Stefano Forli, Maria João Ramos and Arthur J. Olson

J. Chem. Inf. Model., 2014, 54, 2371
DOI: 10.1021/ci500209e

Improved efficacy of foliar application of zinc oxide nanoparticles on zinc biofortification, primary productivity and secondary metabolite production in dragonhead

Marjan Nekoukhou, Sina Fallah, Ali Abbasi-Surki, Lok Raj Pokhrel and Ali Rostamnejadi

Journal of Cleaner Production, 2022, 379, 134803
DOI: 10.1016/j.jclepro.2022.134803

Zinc-mediated Allosteric Inhibition of Caspase-6

Elih M. Velázquez-Delgado and Jeanne A. Hardy

Journal of Biological Chemistry, 2012, 287, 36000
DOI: 10.1074/jbc.M112.397752

Structural and dynamics analysis of matrix metalloproteinases MMP-2 complexed with chemically modified tetracyclines (CMTs)

B.L. Marcial, S.F. Sousa, H.F. Dos Santos and M.J. Ramos

Journal of Biomolecular Structure and Dynamics, 2014, 32, 1907
DOI: 10.1080/07391102.2013.842186

Synthesis, crystal structure and DFT studies of a Zinc(II) complex of 1,3-diaminopropane (Dap), [Zn(Dap)(NCS)2][Zn(Dap)(NCS)2]n. The additional stabilizing role of S⋯π chalcogen bond

Mshari A. Alotaibi, Abdulrahman I. Alharthi, Wiktor Zierkiewicz, Muhammad Akhtar, Muhammad Nawaz Tahir, Muhammad Mazhar, Anvarhusein A. Isab and Saeed Ahmad

Journal of Molecular Structure, 2017, 1133, 271
DOI: 10.1016/j.molstruc.2016.11.085

Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4

Anson C.K. Chan, Kris M. Blair, Yanjie Liu, Emilisa Frirdich, Erin C. Gaynor, Martin E. Tanner, Nina R. Salama and Michael E.P. Murphy

Journal of Biological Chemistry, 2015, 290, 3622
DOI: 10.1074/jbc.M114.624734

Foliar Application of Iron and Zinc Affected Growth, Mineral Content and Essential Oil Profile in Origanum dubium Boiss

Antonios Chrysargyris and Nikolaos Tzortzakis

J Soil Sci Plant Nutr, 2025, 25, 10952
DOI: 10.1007/s42729-025-02847-5

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics

Antonio Rosato, Yana Valasatava and Claudia Andreini

IJMS, 2016, 17, 671
DOI: 10.3390/ijms17050671

Methanethiol Binding Strengths and Deprotonation Energies in Zn(II)–Imidazole Complexes from M05-2X and MP2 Theories: Coordination Number and Geometry Influences Relevant to Zinc Enzymes

Douglas P. Linder and Kenton R. Rodgers

J. Phys. Chem. B, 2015, 119, 12182
DOI: 10.1021/acs.jpcb.5b07115

Tweaking of Peripheral Moieties in Catalytic Amyloid for Modulating Hydrogel Strength and Hydrolase Activity

Soumya Patra, Nimisha A. Mavlankar, Lakshminarayan Ramesan, Ashmeet Singh and Asish Pal

Chemistry, 2023, 5, 1190
DOI: 10.3390/chemistry5020080

Zn(II) Binding and DNA Binding Properties of Ligand-Substituted CXHH-Type Zinc Finger Proteins

Miki Imanishi, Kazushi Matsumura, Shogo Tsuji, Tomohiro Nakaya, Shigeru Negi, Shiroh Futaki and Yukio Sugiura

Biochemistry, 2012, 51, 3342
DOI: 10.1021/bi300236m

A New Quantum Calibrated Force Field for Zinc–Protein Complex

Tong Zhu, Xudong Xiao, Changge Ji and John Z. H. Zhang

J. Chem. Theory Comput., 2013, 9, 1788
DOI: 10.1021/ct301091z

Chelation and Bridging of Zinc(II) by Tetradentate N2S2Donor Ligands: Similarities and Differences to Copper(I) and Copper(II) Systems

Johannes Schnödt, Monika Sieger, Thomas Schleid, Ingo Hartenbach and Wolfgang Kaim

Zeitschrift anorg allge chemie, 2010, 636, 385
DOI: 10.1002/zaac.200900373

A Pure Polyproline Type I‐like Peptoid Helix by Metal Coordination

Lieby Zborovsky, Alisa Smolyakova, Maria Baskin and Galia Maayan

Chemistry A European J, 2018, 24, 1159
DOI: 10.1002/chem.201704497

Zinc and manganese homeostasis closely interact in mammalian cells

Yukina Nishito, Yoshiki Kamimura, Shino Nagamatsu, Nao Yamamoto, Hiroyuki Yasui and Taiho Kambe

The FASEB Journal, 2024, 38
DOI: 10.1096/fj.202400181R

Updated understanding of the protein–DNA recognition code used by C2H2 zinc finger proteins

Xing Zhang, Robert M. Blumenthal and Xiaodong Cheng

Current Opinion in Structural Biology, 2024, 87, 102836
DOI: 10.1016/j.sbi.2024.102836

DNA-BSA interaction, cytotoxicity and molecular docking of mononuclear zinc complexes with reductively cleaved N2S2 Schiff base ligands

Saeedeh Asadizadeh, Mehdi Amirnasr, Farzaneh Fadaei Tirani, Alireza Mansouri and Kurt Schenk

Inorganica Chimica Acta, 2018, 483, 310
DOI: 10.1016/j.ica.2018.08.037

Interaction energies between metal ions (Zn2+ and Cd2+ ) and biologically relevant ligands

Emma Ahlstrand, Daniel Spångberg, Kersti Hermansson and Ran Friedman

Int. J. Quantum Chem., 2013, 113, 2554
DOI: 10.1002/qua.24506

Molecular Dynamics Study of Zn(Aβ) and Zn(Aβ)2

Lurong Pan, James C. Patterson and Jie Zheng

PLoS ONE, 2013, 8, e70681
DOI: 10.1371/journal.pone.0070681

Crucial role of the cGAS N terminus in mediating flowable and functional cGAS–DNA condensate formation via DNA interactions

Zhelin Jiang, Fan Shi, Juan Li, Rui Liu, Jinhua Zhou, Zhensheng Zhong, Chaowei Shi, Mingming Ma, ShengQi Xiang and Daxing Gao

Proc. Natl. Acad. Sci. U.S.A., 2025, 122
DOI: 10.1073/pnas.2411659122

Assessment of the effects of zinc on the growth and antioxidant enzymes in Scenedesmus ellipsoideus Chodat

Hediye Elif Kiliç, Hatice Tunca, Tuğba Ongun Sevindik and Ali Doğru

Oceanological and Hydrobiological Studies, 2019, 48, 270
DOI: 10.2478/ohs-2019-0024

Synthesis, X-ray structure, and DFT modeling of a new polymeric zinc(II) complex of 2-mercaptonicotinic acid (MntH), {[Zn(Mnt–Mnt)(en)]·H2O}n

Muhammad Akhtar, Ivelina Georgieva, Tsvetan Zahariev, Natasha Trendafilova, Tayyaba Ahmad, Aqeela Noor, Muhammad Nawaz Tahir, Muhammad Mazhar, Anvarhusein A. Isab and Saeed Ahmad

Monatsh Chem, 2019, 150, 219
DOI: 10.1007/s00706-018-2330-8

Wood production and nutritional and antioxidant status of field-grown Eucalyptus under a differential supply of lime and copper plus zinc

Antonio L. Florentino, Alexandre V. Ferraz, Marcia E.A. Carvalho, Nikolas S. Mateus, Liamara S. Masullo, Rafael C.R. Monteleone, Salete A. Gaziola, Ricardo A. Azevedo, José Lavres and José L.M. Gonçalves

Industrial Crops and Products, 2022, 175, 114192
DOI: 10.1016/j.indcrop.2021.114192

Designing Hydrolytic Zinc Metalloenzymes

Melissa L. Zastrow and Vincent L. Pecoraro

Biochemistry, 2014, 53, 957
DOI: 10.1021/bi4016617

Applications of biocompatible nanoparticles in plant biotechnology for enhanced secondary metabolite biosynthesis

Roghaieh Holghoomi and Abasalt Hosseinzadeh Colagar

Inorganic Chemistry Communications, 2024, 167, 112753
DOI: 10.1016/j.inoche.2024.112753