Leyuan
Chen
abc,
Aijiao
Yuan
ac,
Dapeng
Zhang
abc,
Wenjing
Xie
ac and
Hanyong
Peng
*ac
aState Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China. E-mail: hypeng@rcees.ac.cn
bSchool of Environment, Hangzhou Institution for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, China
cUniversity of Chinese Academy of Sciences, Beijing 100049, China
First published on 26th August 2024
Detecting β-estradiol (E2) in environmental monitoring is a complex task due to its status as a significant environmental contaminant. The detection methods require precision, sensitivity, and the ability to be conducted on-site without expensive instrumentation. Herein, we developed a novel approach using E2 aptamer assembled spherical nucleic acids (SNAs), which combines the sensitivity of fluorescence and the simplicity of colorimetry. Initially, a fluorescein (FAM)-labeled DNA aptamer is attached to the surface of gold nanoparticles (AuNPs) through hybridization with thiol-labeled DNA, resulting in fluorescence quenching. However, when E2 is present, the aptamer specifically binds to it, displacing from the thiol-DNA and releasing from the AuNP's surface. This leads to the recovery of fluorescence, allowing for quantitative detection of E2 by measuring the increase in fluorescence signal. Additionally, E2 detection can also be achieved visually using ultraviolet light. For colorimetric analysis, we introduce another set of AuNPs modified with thiol-DNA complementary to the DNA remaining on the surface of the previous AuNPs. When E2 triggers the release of the aptamer, the DNA on both AuNPs hybridized to each other, causing the aggregation of AuNPs and resulting in a distinct color change from red to purple. The detection limits for fluorescence and colorimetric analyses are 1 nM and 5 nM, respectively. We successfully applied this biosensing strategy to determine E2 concentrations in tap water and serum samples. Furthermore, our assay exhibits high selectivity towards E2 over other estrogens. Overall, this innovative approach provides an effective and versatile method for convenient on-site monitoring of E2.
The detection of E2 is crucial to prevent potential harm to the human body.13–15 Currently, methods such as liquid chromatography-tandem mass spectrometry (LC-MS/MS), enzyme-linked immunosorbent assay (ELISA), and in vitro bioassays are available for E2 detection.16,17 However, these techniques require skilled technicians, expensive instruments, and laboratory settings, making them unsuitable for portable and real-time detection.18 Consequently, there is an urgent need for alternative detection methods.
Aptamers, which are artificial single-stranded nucleic acid ligands, offer a promising solution.19 They can be selected from large libraries and used to target various molecules, including small organic compounds like E2.20–22 Aptamers have several advantages over antibodies, such as enhanced stability, lower cost, and programmable properties.23–27 They can be combined with different signaling platforms, making them highly suitable for detecting small and medium-sized molecules in environmental samples.
The assembly of the aptamer onto gold nanoparticles (AuNPs) can lead to the formation of spherical nucleic acids, which have attracted significant interest in the field of biosensing due to their distinctive characteristics.28 They possess a high specific surface area, exhibit good biocompatibility, can be controlled in size, possess catalytic properties, and exhibit complex optical characteristics. By utilizing fluorescence resonance energy transfer (FRET), AuNPs can quench fluorescence signals.29,30 Moreover, their aggregation can induce color changes due to the distance-dependent localized surface plasmon resonance (LSPR) property, which appear in the absorption spectrum as a redshift of the absorption peak along with a decrease in intensity.31,32
In this study, we developed a novel approach to detect E2, an environmental endocrine disruptor, through the development of a dual-mode analytical method. Our method utilizes E2 aptamer assembled spherical nucleic acids (SNAs) and incorporates the conformational change of the E2 aptamer along with complementary DNA modified AuNPs. As a result, we achieve significant responses in both fluorescence and colorimetric analyses. This innovative method offers rapid and accurate detection of E2, with a low detection limit and a wide linear range of response. Additionally, the colorimetric detection can be conveniently carried out using a portable UV-visible spectrophotometer, facilitating on-site detection. Overall, this technique provides a simple and efficient approach for detecting E2, demonstrating its potential for environmental monitoring as well as biological fluids detection.
The E2 standard was purchased from J&K Scientific Co., Ltd (Beijing, China), while Aladdin Reagent Co., Ltd (Shanghai, China) provided standards of E1, E3, EE2, and BPA. Analytes were dissolved in DMSO at a concentration of 5 mM to create stock solutions, which were stored at 4 °C in the absence of light. Prior to detection, working solutions with specific concentrations were prepared by diluting the stock solutions with DMSO to 25 μM and then further diluting them with the sensing buffer to achieve the desired target concentration. Purified water from a Milli-Q system (Millipore, Bedford, MA, USA) was used for all experiments.
The second type of SNA involved functionalizing the AuNPs with single strand (ss) DNA, a thiol-DNA complementary to the thiol-DNA on the first SNA. To achieve this, 500 μL of 20 nm AuNPs was combined with 6 μL of 100 μM ssDNA and incubated for 5 minutes in a 1.5 mL micro test tube. The molar ratio of DNA to AuNP was approximately 1200:
1. Next, 50 μL of 20% Tween 20 was added, followed by another 30 minutes incubation. Subsequently, 350 μL of 5 M NaCl was added, and the solution was subjected to 3 hours of salt aging with intermittent ultrasound treatment every hour. After salt aging, the mixture underwent centrifugation at 13
000 g for 20 minutes to remove the supernatant containing unconjugated DNA. This washing step, involving the addition of 500 μL of washing buffer (10 mM Tris–HCl + 100 mM NaCl + 0.05% Tween 20) to the precipitate, resuspension, centrifugation, and removal of the supernatant, was repeated three times. Finally, the functionalized AuNPs were resuspended in 250 μL of preserving buffer (20 mM HEPES + 100 mM NaCl) to achieve a final concentration of 2 nM.
To modulate the loading quantity of ssDNA on AuNPs, ssDNA was mixed with polyT at a ratio of 6:
n, where n represents values of 2, 4, 6, 7, 8, 10, and 16. The resulting mixture was then added to AuNPs. Following a 3 hours salt aging process, the mixture underwent washing steps and was subsequently stored in a preserving buffer.
The confirmation of DNA loading on the surface of AuNPs was validated through transmission electron microscopy (TEM) and energy-dispersive X-ray (EDX) mapping analyses (Fig. S1†), by comparing absorption spectra between DNA-AuNPs and bare AuNPs (Fig. S2†), and by assessing changes in fluorescence intensity of DNA-AuNPs before and after the introduction of mercaptoethanol (ME) (Fig. S3†).
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Scheme 1 Schematic description of the dual-mode biosensor for E2 detection based on the aggregation of AuNPs and recovery of fluorescence signal induced by aptamer. |
Initially, the fluorescence of the FAM-labeled aptamer is quenched when it assembles on the AuNPs. However, in the presence of E2, the dual-mode biosensor becomes activated. The aptamer specifically binds to E2, initiating a strand displacement reaction that releases the FAM-labeled aptamer from the dsDNA-AuNPs. This release generates a fluorescence signal that can be monitored in real-time.
Simultaneously, the remaining ssDNA-A on the dsDNA-AuNPs hybridizes with its complementary DNA on the ssDNA-B-AuNPs. This hybridization causes the aggregation of AuNPs, resulting in a distinct solution colour change from red to purple. Therefore, the biosensor enables the detection of an increase both in fluorescence signal and the A650/A525 ratio (where A650 and A525 represent the absorbance intensity at 650 nm and 525 nm, respectively).
The developed colorimetric-fluorescence dual-mode biosensor effectively translates target-specific recognition into the aggregation of AuNPs as a reporter and the fluorescence signal resulting from the release of the FAM-labeled aptamer from the AuNPs' surface. This biosensor exhibits potential for various environmental applications.
We proceeded to investigate the formation of AuNPs aggregates and the colorimetric reaction between ssDNA-A and ssDNA-B decorated AuNPs, based on the principle of base complementary pairing. To examine the impact of ionic strength, we varied the concentration of Mg2+ ions while maintaining the concentration of ssDNA-A-AuNPs and ssDNA-B-AuNPs at 2 nM. As depicted in Fig. 1A, the characteristic absorbance peak of AuNPs displayed a red shift and decreased intensity with increasing Mg2+ ion concentration from 5 mM to 45 mM. The colorimetric reaction between ssDNA-A and ssDNA-B was observed, leading to a change in the colour of the solution depending on the concentration of Mg2+ ions. Activation of the colorimetric reaction occurred when the Mg2+ ion concentration exceeded 20 mM.
Due to variations in the loading capacity of dsDNA and ssDNA on AuNPs, as well as incomplete reaction between E2 and dsDNA, the amount of ssDNA-B in the system was lower than that of ssDNA-A. To assess the performance of the colorimetric reaction between ssDNA-A-AuNPs and ssDNA-B-AuNPs, we utilized ssDNA-B-AuNPs with a lower proportion. The mixtures were subjected to a 30 minutes reaction in a buffer with a Mg2+ concentration of 60 mM, with the ssDNA-A-AuNPs solution serving as a negative control. As shown in Fig. 1B, the A650/A525 ratio and the colorimetric change were still distinguishable in the mixture, even when the concentration of ssDNA-B-AuNPs was only 0.1 times that of ssDNA-A-AuNPs. The position of the absorption peak and the A650/A525 ratio demonstrated a positive correlation with the amount of ssDNA-B-AuNPs in the mixture, indicating the feasibility of quantitative detection of E2 using the colorimetric method.
Furthermore, we explored the reaction efficiency of E2 and the aptamer by monitoring the fluorescence kinetics of the reaction between E2 and dsDNA-AuNPs. Upon the release of the FAM-labeled aptamer from dsDNA-AuNPs in the presence of E2, the fluorescence signal of FAM was restored (Fig. 1C). The intensity of fluorescence recovery increased with higher E2 concentrations. Changes in circular dichroic (CD) spectra of dsDNA after addition of estradiol also implied effective binding of E2 and aptamer (Fig. S5†).
Next, we focused on optimizing the reaction conditions for the detection of E2 using dsDNA-AuNPs. The efficiency of fluorescence intensity recovery in the mixture was monitored using the (F1 − F0)/F0 value, where F1 represents the fluorescence intensity of the test sample and F0 represents the fluorescence intensity of the negative control. To begin, we examined the influence of Mg2+ ion concentration on E2 detection. Fig. 2A demonstrates that the maximum recovery efficiency was achieved at a Mg2+ ion concentration of 60 mM. Conversely, the concentration of Na+ had minimal effect on the fluorescence intensity recovery efficiency within the range of 0 to 250 mM, as shown in Fig. 2B. Furthermore, we investigated the impact of different surfactants, such as Tween 20 and Tween 80, on the reaction (Fig. 2C). Interestingly, the addition of surfactants was found to have an adverse effect on the reaction. Hence, the inclusion of surfactants in the buffer was deemed unnecessary.
Lastly, we explored the concentration of dsDNA-AuNPs within the range of 0.125 to 0.5 nM (Fig. 2D). It was observed that the recovery efficiency increased with higher concentrations of dsDNA-AuNPs. Based on these results, a concentration of 0.5 nM was determined to be the appropriate concentration for dsDNA-AuNPs.
Initially, we investigated the impact of DNA loading amount on AuNPs and its effect on the colorimetric reaction. By synthesizing dsDNA-AuNPs and ssDNA-A-AuNPs with varying DNA loading capacities, we evaluated their detection efficiency. Based on the fluorescence intensity results (Fig. S6†), we observed that reducing the DNA loading capacity of dsDNA-AuNPs had minimal effect on the fluorescence intensity recovery efficiency. However, when the loading capacity of ssDNA-A-AuNPs was reduced to 1/8, the fluorescence recovery efficiency increased to nearly double that of the original sample. Therefore, we prepared dsDNA-AuNPs with the highest achievable loading capacity and tested their colorimetric reaction performance against ssDNA-A-AuNPs with various loading capacities. Fig. 3A demonstrated that the A650/A525 ratio remained similar in samples with and without the presence of E2 when the loading capacity of ssDNA-A-AuNPs was reduced to 1/2 or 1/4. However, a noticeable difference in the A650/A525 ratio was observed between samples with and without E2 when the loading capacity of ssDNA-A-AuNPs was reduced to 1/8. Further reduction in the loading capacity to 1/10 or 1/16 led to significant decreases in the intensities of the A650/A525 ratio in samples with and without E2. To quantify this difference, we calculated the E1/E0 value, where E1 represents the A650/A525 value of the sample in the presence of E2, and E0 represents the A650/A525 value of the negative sample without E2. It was observed that the E1/E0 value increased initially and then decreased with decreasing loading capacity. When the ssDNA-A-AuNPs loading capacity was reduced to 1/8 of the original, the E1/E0 value reached a maximum value of 1.6.
Subsequently, we analyzed the optimal concentration of Mg2+ in the sensing buffer using AuNPs with optimized loading efficiency. The results showed that the addition of E2 did not significantly alter the solution color when the concentration of Mg2+ ranged from 0 to 60 mM (Fig. 3B). The solution color transitioned from pink to lavender when the Mg2+ concentration increased to 80 mM, and the biosensor exhibited good detection performance. However, both samples with and without the presence of E2 exhibited an evident color change as the concentration of Mg2+ continued to increase beyond 90 mM.
Furthermore, we investigated the effect of Na+ concentration in the sensing buffer. As depicted in Fig. 3C, both samples with and without the presence of E2 displayed a decrease in the A650/A525 ratio with increasing Na+ concentration. The E1/E0 value exhibited an increase within the range of Na+ concentration between 150 and 250 mM, indicating a significant difference between samples with and without the presence of E2. Based on these findings, we determined 200 mM to be the appropriate Na+ concentration.
Furthermore, a noticeable color change from pink to light pink and eventually to purple was observed as the E2 concentration increased (inset of Fig. 4B), indicating a colorimetric response within the E2 concentration range of 0 nM to 10 μM. The limit of detection (LOD), which was determined when the signal change caused by E2 was three times the standard deviation of the control samples, was as low as 5 nM for E2. The dual-mode biosensor also exhibited a linear A650/A525 response within the E2 concentration range of 10 to 500 nM.
Subsequently, the fluorescence signal was monitored under the same conditions. As shown in Fig. 4B, a strong positive correlation was observed between the detected fluorescence signal and the added E2 concentrations within the linear range of 0 to 250 nM. The LOD was calculated to be 1 nM. A semi-quantitative detection of E2 was performed by monitoring the fluorescence change under ultraviolet lamp irradiation. As depicted in the inset of Fig. 4D, the solution displayed a bright green fluorescence at an E2 concentration of 10 μM. The green fluorescence of the solution remained observable as the E2 concentration decreased to 100 nM. However, when the E2 concentration dropped below 50 nM, it became challenging to discern the green fluorescence of the solution under ultraviolet irradiation. Comparing the results to other previously reported biosensors (Table S2†), both of these methods exhibited competitiveness in terms of sensitivity and efficiency for detecting E2.
We proceeded with testing tap water and FBS samples spiked with E2 (Table 1). Our assay revealed recovery rates ranging between 98.1% and 107.0%, indicating the biosensor's precise detection of the spiked E2 levels. The relative standard deviations (RSD) for these measurements ranged from 3.8% to 6.2%, based on three replicates (n = 3). These results demonstrate the feasibility of the biosensor for the detection of E2 in complex sample matrices, such as environmental water and biological fluids. Furthermore, we conducted a 14 days stability assessment of the biosensor (Fig. S9†). The results demonstrated that there was no self-aggregation within the 14 days timeframe, and the fluorescence signal recovery efficiency remained consistently robust. This observation underscores the substantial practical application potential of the biosensor.
Samples | Added (nM) | Found (nM) | RSD (%) | Recovery (%) |
---|---|---|---|---|
Tap water | 10 | 10.56 | 6.2 | 105.6 |
75 | 75.92 | 3.8 | 101.2 | |
FBS | 60 | 64.18 | 6.2 | 107.0 |
400 | 392.56 | 4.3 | 98.1 |
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ay01283f |
This journal is © The Royal Society of Chemistry 2024 |