Muhammad Shafiq
Bin Mohd Yusof
,
Yong Liang
Lim
and
Zhi-Heng
Loh
*
Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore. E-mail: zhiheng@ntu.edu.sg
First published on 16th August 2021
The ultrafast dynamics triggered by the photodetachment of the tyrosinate dianion in aqueous environment shed light on the elementary processes that accompany the interaction of ionizing radiation with biological matter. Photodetachment of the tryosinate dianion yields the tyrosyl radical anion, an important intermediate in biological redox reactions, although the study of its ultrafast dynamics is limited. Here, we utilize femtosecond optical pump–probe spectroscopy to investigate the ultrafast structural reorganization dynamics that follow the photodetachment of the tyrosinate dianion in aqueous solution. Photodetachment of the tyrosinate dianion leads to vibrational wave packet motion along seven vibrational modes that are coupled to the photodetachment process. The vibrational modes are assigned with the aid of density functional theory (DFT) calculations. Our results offer a glimpse of the elementary dynamics of ionized biomolecules and suggest the possibility of extending this approach to investigate the ionization-induced structural rearrangement of other aromatic amino acids and larger biomolecules.
In this study, we focus on tyrosine (Tyr), an amino acid with a phenolic side chain. Tyrosine participates in biological activities such as protein phosphorylation,7–10 DNA repair,11–14 and photoreception.15 A key intermediate in many of these processes is the tyrosyl radical (Tyr˙), whose involvement in proton-coupled electron transfer (PCET) has been the subject of extensive experimental and theoretical studies.11,13–19 Early microsecond flash photolysis and nanosecond laser experiments have elucidated the formation of the tyrosyl radical via the triplet state of tyrosine and its subsequent bimolecular reactions.20–22 Ultraviolet resonance Raman23,24 and FTIR spectroscopies25 have identified the characteristic vibrational frequencies of the tyrosyl radical, both in aqueous solution and in a peptide matrix.26–28
While numerous studies have unraveled the dynamics of the hydrated electron produced by the photoionization of aqueous solutes,29–35 investigations of the ultrafast dynamics of the accompanying radical species are relatively limited. Here, building upon our earlier work on the photodetachment of aqueous phenoxide,36 we aim to elucidate the ultrafast vibrational wave packet dynamics of the tyrosyl radical anion (Tyr˙−) triggered by the photodetachment of the tyrosinate dianion (Tyr2−; Fig. 1) in aqueous solution. When driven by an ultrashort laser pulse, photodetachment triggers ultrafast vibrational wave packet dynamics involving vibrational modes along which the equilibrium geometries before and after electron ejection are displaced.36 Vibrational modes that appear in the wave packet dynamics therefore encode structural reorganization. In our experiment, vibrational coherences will be detected by near-ultraviolet transient absorption spectroscopy, performed with ∼10 fs time resolution. This time-domain approach complements energy-resolved measurements of the Franck–Condon progression by photoelectron spectroscopy. For amino acids in aqueous solution, however, their Franck–Condon progression is obfuscated by the ∼1 eV-wide, inhomogeneously broadened valence photoelectron bands.6
Fig. 1 Structure of the tyrosinate dianion (Tyr2−). The carbon, hydrogen, oxygen and nitrogen atoms are in gray, white, red and blue, respectively. |
Aside from its relevance to radiation chemistry and biological redox reactions, the choice of the tyrosine for the present study is also motivated by several practical considerations. First, the estimated vertical ionization energy of the tyrosinate dianion (∼7.1 eV)6,37 is lower compared to those of liquid water (11.2 eV)38–41 and aqueous hydroxide (9.2 eV).42 When driving photodetachment in the strong-field limit, the lower vertical ionization energy of the tyrosinate dianion favors its photodetachment and minimizes contributions from the photodetachment of aqueous hydroxide and the solvent to the transient absorption signal. Second, the dianion form is more water-soluble (60.0 mM at pH 13) than the neutral form (2.7 mM at isoelectronic point),43 hence further increasing the contribution from the photodetachment of tyrosinate to the transient absorption signal. Third, the absorption signature of the tyrosyl radical at ∼400 nm22,44,45 is located away from the strong absorption peak of the hydrated electron byproduct at ∼720 nm,46 thus enabling a clear view of the tyrosyl radical absorption spectrum evolving in time due to vibrational wave packet motion.
Here, we present the ultrafast vibrational wave packet dynamics induced by the photodetachment of the tyrosinate dianion in aqueous solution. We identify the vibrational modes of the tyrosyl radical anion along which structural reorganization occurs upon photodetachment. Our experimental results are complemented by DFT calculations of vibrational frequencies of the aqueous tyrosyl radical anion. This study provides further insights into the ultrafast structural dynamics that accompany the interaction ionization radiation with biological matter.
The transform-limited pulses, which function as the strong-field ionizing pump, are directed to the sample. The ionizing pump pulses are focused onto the sample by a 50 cm focal length concave mirror. The beam waist (1/e2 radius) of the pump at the sample target is 120 μm. A maximum pulse energy of 25 μJ is directed to the tyrosine solution, yielding a peak intensity of 2.0 × 1013 W cm−2. An optical delay stage line, driven by a piezo translation stage (Physik Instrumente, N-664.3A), is positioned in the ionizing pump beam path to provide a variable time delay between pump and probe pulses in 5 fs steps.
The remaining output from the chirped mirror compressor passes through a pair of wedges (Femtolasers, OA124), follow by a 50 μm-thick Type 1 beta-barium borate (BBO) crystal (Casix, θ = 29.0°) to generate the UV probe via second harmonic generation. The broadband UV probe spans 360 nm to 460 nm (Fig. S1(b), ESI†). A pair of dichroic beamsplitters (Layertec, 109433) placed after the BBO crystal removes the residual fundamental beam. The UV beam is then split off by a reflective neutral density filter (Newport, FRQ-ND05) to produce the probe and reference pulses. The reflected UV probe is focused onto the sample by a 15 cm focal-length off-axis parabolic reflector (Thorlabs). The focused UV probe at the sample target has a beam waist (1/e2 radius) of 42 μm and a pulse energy of 17 nJ. The peak intensity of the UV probe is 5.2 × 1010 W cm−2.
A slit nozzle (Metaheuristics, Type L) is used in conjunction with a peristaltic pump (Cole-Parmer, 07528-10) and a pulse dampener to produce a microjet of the tyrosinate dianion solution for experiments. The volume flow rate of 92 mL min−1 translates to a vertical flow rate of approximately 8.5 mm ms−1, sufficiently high to ensure that a fresh volume of the tyrosinate dianion solution is exposed to each ionizing pump pulse. A liquid jet of 7 μm thickness is produced, which yields a sizeable differential absorption signal (ΔA ∼ 0.1), while minimizing the temporal broadening of the pulses in the liquid jet due to dispersion. In addition, a thin liquid jet limits the group-velocity mismatch between the pump and probe to <1 fs, making its effect on the time resolution negligible.
A synchronized optical chopper is placed in the ionizing pump beam path before the sample to modulate the repetition rate of the ionizing pump at 0.5 kHz. The probe beam that is transmitted through the microjet is focused into a 300 mm spectrograph (Princeton Instruments, Acton SP2300). The spectrograph is equipped with a 600 grooves per mm grating blazed at 500 nm and a 1024-pixel silicon (Si) photodiode array detector (Stresing, S8381-1024Q) with a read-out rate of 1 kHz, which allows simultaneous acquisition of probe spectra obtained with and without the ionizing pump pulse. The reference UV pulses are focused into an identical spectrograph, which is equipped with a similar grating and photodiode array operating at 1 kHz repetition rate. Referenced detection reduces noise caused by shot-to-shot fluctuations of the probe beam. The Si photodiode array detectors are interfaced to desktop computers for automated data acquisition.
L-Tyrosine (Sigma-Aldrich, ≥98% HPLC) and sodium hydroxide (VWR Chemicals, 98.9% pellets) are used as received. Since L-tyrosine has relatively low solubility in water (2.7 mM at its isoelectronic point),43L-tyrosine is dissolved and sonicated in sodium hydroxide solution to produce a 150 mM solution at pH 14. Given the phenol side chain pKa of 10.07,49 we expect >99.9% deprotonation of the phenolic OH at pH 14. That is, tyrosine exists in our experiments in the dianionic form (Tyr2−).
Fig. 2 Time-resolved differential absorption spectrum of the photodetached aqueous tyrosinate dianion as a function of pump–probe time delay. |
Previous studies have shown that 4.68 eV (265 nm) photoexcitation of tyrosine to the S1 (ππ*) state yields the tyrosyl radical via a two-photon process involving the lowest-energy triplet state of tyrosine as an intermediate.22 In the present study, however, we discount the possibility that the tyrosyl radical anion is formed via the electronically excited states of the tyrosinate dianion. This is evident from the pump-power dependence measurements, which show the photodetachment occurs directly via a three-photon process (Fig. 3 and Section S1, ESI†). While the vertical ionization energy of the tyrosinate dianion is unknown, we note that tyrosine and phenol have identical vertical ionization energies of 7.8 eV.6 As such, we expect the vertical ionization energies of the tyrosinate dianion and phenoxide to be similar; the latter is reported to be 7.1 eV,37 with the photoelectron band extending to <6 eV binding energy. Considering that the bottom of the conduction band of liquid water resides ∼1 eV below the vacuum level,54 the total energy input of 5.9 eV that is associated with a three-photon photodetachment process is sufficient to remove an electron from the tyrosinate dianion and inject it into the conduction band of liquid water.
Global fitting of the time-resolved ΔA spectra over the 370–455 nm probe wavelength range and 120 fs after time-zero to the function:
ΔA(λ,t) = ΔA0(λ) + ΔA1(λ)(e−t/τd1 − e−t/τr1) + ΔA2(λ)(e−t/τd2) −1, | (1) |
The formation and subsequent decay of the hydrated electron is modeled by sequential first-order kinetics (see the second term in eqn (1)). Hydrated electron formation involves the trapping of the electron that is initially injected into the conduction band by photodetachment55 followed by vibrational cooling; this entire process can be modeled by first-order kinetics.29–35 Since the hydrated electron depopulation occurs via geminate recombination, a process that exhibits nonexponential decay behavior,29,56 the exponential decay constant that is extracted from our analysis should be regarded as merely an approximation to the decay of the hydrated electron population by geminate recombination and observed within a very narrow (<4 ps) time-delay window. Moreover, in view of an earlier finding that electron–ion recombination dynamics involving solutes in aqueous solution is considerably slower than the diffusion limit,57 which suggests negligible recombination between tyrosyl radical anions and hydrated electrons on the few-picosecond timescale in our experiments, we employ the same time constants as those obtained from aqueous NaOH in our analysis. While a detailed analysis of the geminate recombination dynamics lies beyond the scope of the present work, a future study that varies the concentration of the Tyr2− dianion solute and extends the pump–probe measurements to >0.1 ns time delays would allow one to disentangle the relative contributions of the geminate recombination channels that involve the hydroxyl radicals and the tyrosyl radical anions.
Extrapolating the ΔA(λ,t) time traces (Fig. 4(a)) collected for the photodetached tyrosinate dianion to time zero reveals an offset ΔA0(λ), which indicates the formation of the tyrosyl radical anion immediately upon strong-field photodetachment (Fig. 4(b), in red). This offset is noticeably smaller for the time traces for photodetached aqueous sodium hydroxide obtained under similar experimental conditions (Fig. 4(b), in blue), consistent with the fact that the hydroxyl radical, produced by the photodetachment of aqueous hydroxide, does not exhibit any appreciable absorption in the >400 nm region (εOH = 30 M−1 cm−1 at 400 nm).58 The wavelength-dependent offset ΔA0(λ) that is obtained for the tyrosinate dianion corresponds to the absorption spectrum of the tyrosyl radical anion at the Franck–Condon region, generated immediately upon photodetachment, prior to vibrational cooling. Compared to the differential absorption spectra for the tyrosyl radical reported in the literature,22,44,45 the additional broadening of ΔA0(λ) towards the long-wavelength side is suggestive of a vibrationally excited tyrosyl radical anion that is produced immediately upon photodetachment. On the other hand, ΔA0(λ) of the sodium hydroxide sample shows a gradual increase with decreasing probe wavelength, following the absorption spectral signature of the hydroxyl radical.58
Global analysis using eqn (1) gives τd2 = 0.93 ± 0.02 ps. Based on previous experimental results that reveal the stability of tyrosyl radical with respect to dissociation,59 we exclude the possibility that the decay of the ΔA signal arises from photofragmentation. The appearance of the decay associated spectrum ΔA2(λ) is suggestive of the decay of the ΔA signal in the long-wavelength region (λ > 420 nm) and the sharpening of the 400 nm and 413 nm absorption maxima of the Tyr˙− radical spectrum. As such, we ascribe τd2 to vibrational relaxation. A similar analysis performed on photodetached phenoxide anions in aqueous solution yields a vibrational relaxation timescale of 1.02 ± 0.03 ps,36 suggesting that the amino acid backbone induces a small but noticeable increase in the vibrational relaxation. Due to the limited range of time delays (∼4 ps) sampled in our experiments, however, we cannot rule out the possible existence of slower vibrational relaxation pathways.
Since ΔA1(λ) tracks the formation of the hydrated electron and its subsequent decay by geminate recombination, it should follow the absorption spectrum of the hydrated electron. Using the relation:
ΔA1(λ) = εe(λ)ceL, | (2) |
ΔA0(λ) = [εTyr(λ)cTyr + εOH(λ)cOH]L, | (3) |
To analyze the vibrational wave packet dynamics quantitatively, we compute the spectral first-moment 〈E(t)〉 time trace, given as
(4) |
The oscillatory nature of the spectral first-moment time trace arises from vibrational wave packet motion of the tyrosyl radical anion. Wave packet motion along the vibrational mode Qi requires photodetachment to project the vibrational probability density of Tyr2− vertically onto the potential energy curve of Tyr˙−, and for the potential energy surfaces of Tyr2− and Tyr˙− to be displaced along Qi. From the Franck–Condon region of the Tyr˙− potential, temporal evolution of the coherent superposition of vibrational eigenstates leads to vibrational wave packet motion. This wave packet motion in turn modulates the probe transition energy of the Tyr˙− anion radical, giving rise to the observed oscillations in the first-moment time trace. It is important to note that vibrational wave packet motion can be initiated by such a displacive mechanism only when the equilibrium geometries of Tyr2− and Tyr˙− are displaced along a given vibrational mode Qi. The vibrational modes can be identified by their characteristic frequencies, in turn obtained from the fast-Fourier transform (FFT) power spectrum of the first-moment time trace (Fig. 5(b), in red). These frequencies and their relative FFT powers are summarized in Table 1.
Experimental | Calculated frequency (cm−1) | Assignment | |||||
---|---|---|---|---|---|---|---|
FFT Analysis | Time-domain analysis | ||||||
Frequency (cm−1) | Power (norm.) | Frequency (cm−1) | Amplitude (meV) | Dephasing Time (ps) | Phase (π rad) | ||
476 | 6.0 × 10−2 | 483 ± 1 | 0.45 ± 0.06 | 0.90 ± 0.14 | 1.06 ± 0.04 | 482 | 6a |
825 | 1.9 × 10−1 | 816 ± 2 | 7.29 ± 0.84 | 0.19 ± 0.01 | 0.77 ± 0.04 | 832 | 1 |
978 | 6.8 × 10−2 | 1000 ± 3 | 2.19 ± 0.46 | 0.25 ± 0.03 | 0.74 ± 0.07 | 994 | 19a |
1166 | 9.1 × 10−2 | 1172 ± 1 | 0.41 ± 0.06 | 1.30 ± 0.37 | 0.54 ± 0.06 | 1185 | 8a |
1211 | 1.3 × 10−1 | 1210 ± 1 | 1.03 ± 0.13 | 0.65 ± 0.10 | 0.30 ± 0.05 | 1240 | 13 |
1516 | 1 | 1515 ± 1 | 2.01 ± 0.09 | 0.77 ± 0.06 | 1.69 ± 0.02 | 1520 | 20a |
1606 | 1.9 × 10−1 | 1601 ± 1 | 1.11 ± 0.09 | 0.73 ± 0.10 | 0.60 ± 0.03 | 1626 | 9a |
1552 | 8.1 × 10−1 | 1554 ± 1 | 0.40 ± 0.03 | 3.67 ± 0.55 | 0.45 ± 0.01 | O2 | |
2324 | 7.1 × 10−1 | 2328 ± 1 | 0.47 ± 0.03 | 4.01 ± 0.45 | 0.56 ± 0.01 | N2 |
A control experiment performed with aqueous NaOH (pH 14) under similar photodetachment conditions confirms that the oscillatory features observed in the first-moment time trace originate from photodetached tyrosinate dianion. The FFT power spectrum of photodetached aqueous NaOH is shown in Fig. 5(b), in blue. Here, the only observed frequencies are 1554 cm−1 and 2328 cm−1, which correspond to the stretching frequencies of oxygen (O2) and nitrogen (N2), respectively.61,62 These frequencies, also present in the FFT power spectrum of the photodetached tyrosinate dianion, are due to ISRS of N2 and O2, which in turn arise from the experiments being performed in air. The estimated vibrational frequency of the OH˙ radical, produced by photodetachment of OH−, is ∼3880 cm−1,63 beyond the high-frequency cut-off of our experiment. Based on the results of the control experiment, we conclude that the remaining seven vibrational frequencies reported in Table 1 are associated with the tyrosyl radical anion.64,65
Aside from FFT, the first-moment time-trace can also be analyzed in the time domain by fitting it to a sum of exponentially damped cosine functions,
(5) |
It is interesting to compare the photodetachment-induced vibrational wave packet dynamics of the tyrosyl radical anion and the phenoxyl radical. The vibrational wave packet dynamics triggered by the photodetachment of aqueous phenoxide is characterized by an FFT power spectrum that is strongly peaked at 527 cm−1. This vibrational frequency, assigned to the benzene CCC bend, also dominates the Franck–Condon progression observed in the gas-phase photodetachment spectrum of phenoxide.68 On the other hand, the largest FFT power observed in the photodetachment-induced vibrational coherence of the tyrosyl radical anion is associated with the C–O stretch at 1515 cm−1 (Fig. 5(b), in red); in comparison, the FFT power of the corresponding CCC bending mode in the tyrosyl radical anion, downshifted to 483 cm−1, is >10× weaker. Aside from changes in the relative FFT power, the vibrational modes at 816 and 1000 cm−1 of the tyrosyl radical anion also exhibit dephasing times that are ∼3× shorter than those of the corresponding modes of the phenoxyl radical. This faster dephasing is suggestive of anharmonic coupling of these benzene ring modes to the amino acid backbone of tyrosine, a subject for future investigations.
The displacement vectors of the vibrational modes that contribute to the first-moment time trace are largely localized on the phenoxide moiety (Fig. 6). This result can be rationalized by considering the electronic character of the orbital from which the electron is ejected. Strong-field processes preferentially eject the most weakly bound electrons from molecules. Within a molecular orbital picture, this implies that the electron that lies in the highest occupied molecular orbital (HOMO) of the tyrosinate dianion has the highest probability of being removed by strong-field photodetachment. The calculated HOMO is primarily localized on the phenoxide sidechain (Fig. 7). Removal of an electron from the HOMO therefore leads to vibrational wave packet motion encoding primarily the structural rearrangement of the phenoxide sidechain, as seen from the few-picometer changes in the calculated C–O and C–C bond lengths of microhydrated Tyr2− and Tyr˙− (Table 2). In addition to the phenoxide moiety, the HOMO also bears a significant albeit minor contribution from the α and β carbon atoms, which explains the calculated changes in the C–C bond distances involving the amino acid backbone; the C–C stretching character is present in the vibrational modes with frequencies 832, 1240, and 1626 cm−1. While the change in the C–O bond length is comparable to that calculated at the same level of theory for the photodetachment of phenoxide,36 and changes in the C–C bond lengths differ from those calculated for phenoxide, suggesting that the amino acid backbone influences the relative contributions of the various vibrational modes to the structural reorganization. This result in turn provides a possible explanation for the qualitatively different appearance of the FFT power spectra associated with vibrational wave packet motion of the phenoxyl radical36 and the tyrosyl radical anion (Fig. 5(b)).
Bond | Bond length/pm | Difference/pm | Bond length/pm | Difference/pm | ||
---|---|---|---|---|---|---|
Tyrosinate dianion | Tyrosyl radical anion | Phenoxide anion | Phenoxyl radical | |||
C1–C2 | 155.2 | 156.3 | 1.1 | |||
C2–C3 | 155.7 | 158.8 | 3.1 | |||
C3–C4 | 151.2 | 148.5 | −2.7 | |||
C4–C5 | 140.1 | 141.9 | 1.8 | 141.7 | 144.8 | 3.1 |
C5–C6 | 139.5 | 137.1 | −2.4 | 139.3 | 137.2 | −2.1 |
C6–C7 | 141.3 | 144.4 | 3.1 | 139.8 | 141.1 | 1.3 |
C7–C8 | 141.7 | 144.5 | 2.8 | 139.8 | 141.1 | 1.3 |
C8–C9 | 139.1 | 136.8 | −2.3 | 139.3 | 137.2 | −2.1 |
C9–C4 | 140.3 | 142.3 | 2.0 | 141.7 | 144.8 | 3.1 |
C7–O10 | 132.9 | 127.3 | −5.6 | 132.6 | 126.8 | −5.8 |
O10–O23 | 269.8 | 289.0 | 19.2 | |||
O10–O24 | 269.7 | 289.0 | 19.3 | |||
O10–O25 | 268.9 | 283.8 | 14.9 |
Structural changes that are induced by photodetachment are not confined to the covalent framework of the amino acid itself. According to the DFT calculations, the intermolecular O⋯O distance increases from 2.69–2.70 Å in the microhydrated tyrosinate dianion to 2.84–2.89 Å in the microhydrated tyrosyl radical anion. These O⋯O distances lie within the range of 2.7–3.0 Å that is characteristic of hydrogen bonding.69,70 The increase in the intermolecular O⋯O distances can be attributed to the weakening of the hydrogen bond caused by the removal of electron density on the phenoxide oxygen. The large changes in the intermolecular distance upon photodetachment should trigger coherent hindered translational motion, typically overdamped in liquid water.71,72 Our DFT calculations predict that these intermolecular motions are characterized by vibrational frequencies of ∼130–160 cm−1 (Table S2, ESI†), coinciding with a band observed in the low-frequency region of the FFT power spectrum (Fig. 5(b), inset). Future investigations will aim to elucidate the ultrafast solvation dynamics that accompany the photodetachment process.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/d1cp02975d |
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