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Ewerton Cristhian Lima de Oliveira, Juliana Auzier, Gabriel Pereira Coelho, Lidiane Diniz do Nascimento, Anderson Henrique Lima e Lima, Caio Marcos Flexa Rodrigues, Anton De Spiegeleer, Evelien Wynendaele, Claudomiro Sales, Bart De Spiegeleer and Kauê Santana

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Progress and future of the computational design of antimicrobial peptides (AMPs): bio-inspired functional molecules

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Digital Discovery, 2024, 3, 9
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Digital biology approach for macroscale studies of biofilm growth and biocide effects with electron microscopy

Konstantin S. Kozlov, Daniil A. Boiko, Elena V. Detusheva, Konstantin V. Detushev, Evgeniy O. Pentsak, Anatoly N. Vereshchagin and Valentine P. Ananikov

Digital Discovery, 2023, 2, 1522
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Towards best practices in low-dimensional semi-supervised latent Bayesian optimization for the design of antimicrobial peptides

Jyler Menard and R. A. Mansbach

Mol. Syst. Des. Eng., 2026
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Generative models for antimicrobial peptide design: auto-encoders and beyond

Lukas Beierle, Julian Hahnfeld, Alexander Goesmann, Reihaneh Mostolizadeh and Franz Cemič

BioData Mining, 2026, 19
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Antibacterial mechanism of the novel lipopeptide M3 against Listeria monocytogenes and its application in fish preservation

Chenhao Zhang, Mengsheng Tang, Sivakumar Manickam, Xiaohu Luo, Di Ren, Jian Shen, Jie Yang and Yanan Liu

Food Control, 2026, 181, 111678
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AI-Driven Antimicrobial Peptide Discovery: Mining and Generation

Paulina Szymczak, Wojciech Zarzecki, Jiejing Wang, Yiqian Duan, Jun Wang, Luis Pedro Coelho, Cesar de la Fuente-Nunez and Ewa Szczurek

Acc. Chem. Res., 2025, 58, 1831
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iAMP-EmGCN: A new design for identifying antimicrobial peptides based on BERT and Graph Convolutional Network

Wenxuan Xing, Jie Zhang, Chen Li and Gaifang Dong

Expert Systems with Applications, 2025, 283, 127811
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Machine learning-enabled design features of antimicrobial peptides selectively targeting peri-implant disease progression

Kyle Boone, Natalia Tjokro, Kalea N. Chu, Casey Chen, Malcolm L. Snead and Candan Tamerler

Front. Dent. Med, 2024, 5
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Harnessing Machine Learning Approaches for the Identification, Characterization, and Optimization of Novel Antimicrobial Peptides

Naveed Saleem, Naresh Kumar, Emad El-Omar, Mark Willcox and Xiao-Tao Jiang

Antibiotics, 2025, 14, 1263
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Artificial intelligence-driven antimicrobial peptide discovery

Paulina Szymczak and Ewa Szczurek

Current Opinion in Structural Biology, 2023, 83, 102733
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ConoGPT: Fine-Tuning a Protein Language Model by Incorporating Disulfide Bond Information for Conotoxin Sequence Generation

Guohui Zhao, Cheng Ge, Wenzheng Han, Rilei Yu and Hao Liu

Toxins, 2025, 17, 93
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Towards Safer Antimicrobial Peptide Therapeutics: A Predictive–Generative Framework Targeting ESKAPE Pathogens

Zubia Rashid, Hania Ahmed, Kashif Saleem and Muhammad Razi Uddin Siddiqui

Probiotics & Antimicro. Prot., 2026
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Reinforcement learning-driven exploration of peptide space: accelerating generation of drug-like peptides

Qian Wang, Xiaotong Hu, Zhiqiang Wei, Hao Lu and Hao Liu

Briefings in Bioinformatics, 2024, 25
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Design of Highly Potent Antibiofilm, Antimicrobial Peptides Using Explainable Artificial Intelligence

Karina Pikalyova, Tagir Akhmetshin, Alexey Orlov, Evan F. Haney, Noushin Akhoundsadegh, Jiaying You, Robert E. W. Hancock, Dragos Horvath, Gilles Gérard Marcou, Artem Cherkasov and Alexandre Varnek

J. Chem. Inf. Model., 2026, 66, 744
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AI-driven discovery and design of antimicrobial peptides

Xintian Shen, Youxiang Wang, Peng Zhang and Jian Ji

Sci. China Technol. Sci., 2025, 68
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TaiChiNet: PCA-based Ying-Yang dilution of inter- and intra-BERT layers to represent anti-coronavirus peptides

Kewei Li, Shiying Ding, Zhe Guo, Yusi Fan, Hongmei Liu, Yannan Sun, Gongyou Zhang, Ruochi Zhang, Lan Huang and Fengfeng Zhou

Expert Systems with Applications, 2025, 282, 127786
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MOFormer: navigating the antimicrobial peptide design space with Pareto-based multi-objective transformer

Li Wang, Xiangzheng Fu, Jiahao Yang, Xinyi Zhang, Xiucai Ye, Tetsuya Sakurai, Xiangxiang Zeng and Yiping Liu

Briefings in Bioinformatics, 2025, 26
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A conditional denoising VAE-based framework for antimicrobial peptides generation with preserving desirable properties

Weizhong Zhao, Kaijieyi Hou, Yiting Shen, Xiaohua Hu and Jonathan Wren

Bioinformatics, 2025, 41
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