Discovering potential cancer driver genes by an integrated network-based approach

Kai Shi, Lin Gao and Bingbo Wang

Molecular BioSystems, 2016, 12, 2921
DOI: 10.1039/C6MB00274A

Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability

Yulan Deng, Shangyi Luo, Chunyu Deng, Tao Luo, Wenkang Yin, Hongyi Zhang, Yong Zhang, Xinxin Zhang, Yujia Lan, Yanyan Ping, Yun Xiao and Xia Li

Briefings in Bioinformatics, 2019, 20, 254
DOI: 10.1093/bib/bbx109

A pan‐cancer atlas of cancer hallmark‐associated candidate driver lncRNAs

Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan, Gaoming Liao, Liwen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao and Xia Li

Molecular Oncology, 2018, 12, 1980
DOI: 10.1002/1878-0261.12381

A novel method to identify and characterize personalized functional driver lncRNAs in cancer samples

Xuan Zheng, Feng Li, Hongying Zhao, Yongjuan Tang, Ke Xue, Xiaomeng Zhang, Weixin Liang, Rui Zhao, Xingyu Lv, Xinyu Song, Chunlong Zhang, Yanjun Xu and Yunpeng Zhang

Computational and Structural Biotechnology Journal, 2023, 21, 2471
DOI: 10.1016/j.csbj.2023.03.041

Identifying Key Somatic Copy Number Alterations Driving Dysregulation of Cancer Hallmarks in Lower-Grade Glioma

Yao Zhou, Shuai Wang, Haoteng Yan, Bo Pang, Xinxin Zhang, Lin Pang, Yihan Wang, Jinyuan Xu, Jing Hu, Yujia Lan and Yanyan Ping

Front. Genet., 2021, 12
DOI: 10.3389/fgene.2021.654736

Identifying core gene modules in glioblastoma based on multilayer factor-mediated dysfunctional regulatory networks through integrating multi-dimensional genomic data

Yanyan Ping, Yulan Deng, Li Wang, Hongyi Zhang, Yong Zhang, Chaohan Xu, Hongying Zhao, Huihui Fan, Fulong Yu, Yun Xiao and Xia Li

Nucleic Acids Research, 2015, 43, 1997
DOI: 10.1093/nar/gkv074

Dissecting the Functional Mechanisms of Somatic Copy-Number Alterations Based on Dysregulated ceRNA Networks across Cancers

Yanyan Ping, Yao Zhou, Jing Hu, Lin Pang, Chaohan Xu and Yun Xiao

Molecular Therapy Nucleic Acids, 2020, 21, 464
DOI: 10.1016/j.omtn.2020.06.012

Identifying the driver miRNAs with somatic copy number alterations driving dysregulated ceRNA networks in cancers

Renjie Dou, Shaobo Kang, Huan Yang, Wanmei Zhang, Yijing Zhang, Yuanyuan Liu, Yanyan Ping and Bo Pang

Biol Direct, 2023, 18
DOI: 10.1186/s13062-023-00438-x

Identifying the personalized driver gene sets maximally contributing to abnormality of transcriptome phenotype in glioblastoma multiforme individuals

Jinyuan Xu, Bo Pang, Yujia Lan, Renjie Dou, Shuai Wang, Shaobo Kang, Wanmei Zhang, Yuanyuan Liu, Yijing Zhang and Yanyan Ping

Molecular Oncology, 2023, 17, 2472
DOI: 10.1002/1878-0261.13499

Cooperative genomic alteration network reveals molecular classification across 12 major cancer types

Hongyi Zhang, Yulan Deng, Yong Zhang, Yanyan Ping, Hongying Zhao, Lin Pang, Xinxin Zhang, Li Wang, Chaohan Xu, Yun Xiao and Xia Li

Nucleic Acids Res, 2017, 45, 567
DOI: 10.1093/nar/gkw1087