Porphyrin–DNA conjugates: porphyrin induced adenine–guanine homoduplex stabilization and interduplex assemblies

Gevorg Sargsyan and Milan Balaz

Org. Biomol. Chem., 2012, 10, 5533
DOI: 10.1039/c2ob25710f

Solvent-induced chirality inversion involving supramolecular helix transformation and color-tunable fluorescence of a C6-symmetric hexakis(phenylethynyl)benzene derivative

Koichi Sakajiri, Takeshi Sugisaki, Keiichi Moriya and Shoichi Kutsumizu

Org. Biomol. Chem., 2009, 7, 3757
DOI: 10.1039/b907912b

DNA as supramolecular scaffold for functional molecules: progress in DNA nanotechnology

Thomas J. Bandy, Ashley Brewer, Jonathan R. Burns, Gabriella Marth, ThaoNguyen Nguyen and Eugen Stulz

Chem. Soc. Rev., 2011, 40, 138
DOI: 10.1039/B820255A

Preparation of Ru(ii)@oligonucleotide nanosized polymers as potential tumor-imaging luminescent probes

Geng-Nan Yu, Jun-Chao Huang, Li Li, Ruo-Tong Liu, Jie-Qiong Cao, Qiong Wu, Shuang-Yan Zhang, Cheng-Xi Wang, Wen-Jie Mei and Wen-Jie Zheng

RSC Adv., 2018, 8, 30573
DOI: 10.1039/C8RA05454A

C8-Guanine modifications: effect on Z-DNA formation and its role in cancer

V. Vongsutilers and P. M. Gannett

Org. Biomol. Chem., 2018, 16, 2198
DOI: 10.1039/C8OB00030A

Increased duplex stabilization in porphyrin-LNA zipper arrays with structure dependent exciton coupling

Daniel G. Singleton, Rohanah Hussain, Giuliano Siligardi, Pawan Kumar, Patrick J. Hrdlicka, Nina Berova and Eugen Stulz

Org. Biomol. Chem., 2016, 14, 149
DOI: 10.1039/C5OB01681A

Chirality of a rhodamine heterodimer linked to a DNA scaffold: an experimental and computational study

P. S. Rukin, K. G. Komarova, B. Fresch, E. Collini and F. Remacle

Phys. Chem. Chem. Phys., 2020, 22, 7516
DOI: 10.1039/D0CP00223B

The effect of complex stoichiometry in supramolecular chirality transfer to zinc bisporphyrin systems

Juan Etxebarria, Anton Vidal-Ferran and Pablo Ballester

Chem. Commun., 2008, 5939
DOI: 10.1039/b812819g

Breakdown of Exciton Splitting through Electron Donor–Acceptor Interaction: A Caveat for the Application of Exciton Chirality Method in Macromolecules

Jimmy Joy, Rijo T. Cheriya, Kalaivanan Nagarajan, Anil Shaji and Mahesh Hariharan

J. Phys. Chem. C, 2013, 117, 17927
DOI: 10.1021/jp403431w

Structural Studies on Porphyrin–PNA Conjugates in Parallel PNA:PNA Duplexes: Effect of Stacking Interactions on Helicity

Alessandro Accetta, Ana G. Petrovic, Rosangela Marchelli, Nina Berova and Roberto Corradini

Chirality, 2015, 27, 864
DOI: 10.1002/chir.22521

Functionalized DNA nanostructures for light harvesting and charge separation

Bo Albinsson, Jonas K. Hannestad and Karl Börjesson

Coordination Chemistry Reviews, 2012, 256, 2399
DOI: 10.1016/j.ccr.2012.02.024

Self‐Assembly of Chiral Plasmonic Nanostructures

Xiang Lan and Qiangbin Wang

Advanced Materials, 2016, 28, 10499
DOI: 10.1002/adma.201600697

Synthesis of 6-N-(benzothiazol-2-yl)deoxyadenosine and its exciton-coupled circular dichroism

Yoshiaki Masaki, Akihiro Ohkubo, Kohji Seio and Mitsuo Sekine

Bioorganic & Medicinal Chemistry, 2010, 18, 567
DOI: 10.1016/j.bmc.2009.12.009

DNA as Supramolecular Scaffold for Porphyrin Arrays on the Nanometer Scale

Leslie-Anne Fendt, Imenne Bouamaied, Sandra Thöni, Nicolas Amiot and Eugen Stulz

J. Am. Chem. Soc., 2007, 129, 15319
DOI: 10.1021/ja075711c

Circular Dichroism of Neutral Zinc Porphyrin–Oligonucleotide Conjugates Modified with Flexible Linker

Akira Onoda, Masahiro Igarashi, Satoshi Naganawa, Kiyomi Sasaki, Shinya Ariyasu and Takeshi Yamamura

Bulletin of the Chemical Society of Japan, 2009, 82, 1280
DOI: 10.1246/bcsj.82.1280

Molecular Engineering of Guanine-Rich Sequences: Z-DNA, DNA Triplexes, and G-Quadruplexes

Osman Doluca, Jamie M. Withers and Vyacheslav V. Filichev

Chem. Rev., 2013, 113, 3044
DOI: 10.1021/cr300225q

Nanoarchitectonics with Porphyrin Functionalized DNA

Eugen Stulz

Acc. Chem. Res., 2017, 50, 823
DOI: 10.1021/acs.accounts.6b00583

Synthesis, structure and thermal stability of fully hydrophobic porphyrin–DNA conjugates

Takashi Murashima, Kazuyuki Hayata, Yumi Saiki, Jun Matsui, Daisuke Miyoshi, Takashi Yamada, Toshifumi Miyazawa and Naoki Sugimoto

Tetrahedron Letters, 2007, 48, 8514
DOI: 10.1016/j.tetlet.2007.09.147

Functionalized Nanostructures: Redox-Active Porphyrin Anchors for Supramolecular DNA Assemblies

Karl Börjesson, Joanna Wiberg, Afaf H. El-Sagheer, Thomas Ljungdahl, Jerker Mårtensson, Tom Brown, Bengt Nordén and Bo Albinsson

ACS Nano, 2010, 4, 5037
DOI: 10.1021/nn100667b

Porphyrins as spectroscopic sensors for conformational studies of DNA

Milan Balaz, Klaus Bitsch-Jensen, Angela Mammana, George A. Ellestad, Koji Nakanishi and Nina Berova

Pure and Applied Chemistry, 2007, 79, 801
DOI: 10.1351/pac200779040801

Role of Environmental Factors on the Structure and Spectroscopic Response of 5′‐DNA–Porphyrin Conjugates Caused by Changes in the Porphyrin–Porphyrin Interactions

Angela Mammana, Gennaro Pescitelli, Tomohiro Asakawa, Steffen Jockusch, Ana G. Petrovic, Regina R. Monaco, Roberto Purrello, Nicholas J. Turro, Koji Nakanishi, George A. Ellestad, Milan Balaz and Nina Berova

Chemistry A European J, 2009, 15, 11853
DOI: 10.1002/chem.200902029

Synthesis of new building blocks for use in supramolecular DNA architectures

Thomas Rühl and Eugen Stulz

Supramolecular Chemistry, 2010, 22, 103
DOI: 10.1080/10610270903304418

Supramolecular Helical Columnar Structures Formed by Hydrogen-Bonded Disk-Like (Phenylethynyl)benzene Derivatives with l-Alanine Pendant Groups: Helix Stability and Supramolecular Helical Sense Inversion

Koichi Sakajiri, Takahiro Hirama, Keiichi Yasuda, Shoichi Kutsumizu and Junji Watanabe

Bulletin of the Chemical Society of Japan, 2013, 86, 940
DOI: 10.1246/bcsj.20130105

Interactions of a Tetraanionic Porphyrin with DNA: from a Z-DNA Sensor to a Versatile Supramolecular Device

Alessandro D’Urso, Angela Mammana, Milan Balaz, Andrea E. Holmes, Nina Berova, Rosaria Lauceri and Roberto Purrello

J. Am. Chem. Soc., 2009, 131, 2046
DOI: 10.1021/ja808099u

Sequence and linker dependent chiral dimerization of DNA–porphyrin conjugates

Gevorg Sargsyan, Brianna L. MacLeod, Urice Tohgha and Milan Balaz

Tetrahedron, 2012, 68, 2093
DOI: 10.1016/j.tet.2012.01.021

Significantly Enhanced DNA Thermal Stability Resulting from Porphyrin H‐Aggregate Formation in the Minor Groove of the Duplex

Adam W. I. Stephenson, Niels Bomholt, Ashton C. Partridge and Vyacheslav V. Filichev

ChemBioChem, 2010, 11, 1833
DOI: 10.1002/cbic.201000326

Determination of the Absolute Configuration of Side Chains of Basic Amino Acid Residues Using the Water-Soluble Porphyrin-Based Exciton Chirality Method

Shingo Hattori, Kengo Akagawa, Kazuaki Kudo and Kazuyuki Ishii

J. Phys. Chem. B, 2016, 120, 10280
DOI: 10.1021/acs.jpcb.6b07925

Vibrational and electronic circular dichroism study of the interactions of cationic porphyrins with (dG‐dC)10and (dA‐dT)10

Jakub Nový and Marie Urbanová

Biopolymers, 2007, 85, 349
DOI: 10.1002/bip.20654

Synthesis of β‐Pyrrolic‐Modified Porphyrins and Their Incorporation into DNA

Adam W. I. Stephenson, Ashton C. Partridge and Vyacheslav V. Filichev

Chemistry A European J, 2011, 17, 6227
DOI: 10.1002/chem.201003200

Plasmon-Induced Circular Dichroism of a Chiral Molecule in the Vicinity of Metal Nanocrystals. Application to Various Geometries

Alexander O. Govorov

J. Phys. Chem. C, 2011, 115, 7914
DOI: 10.1021/jp1121432

3,3′-Diethylthiatricarbocyanine Iodide: A Highly Sensitive Chiroptical Reporter of DNA Helicity and Sequence

Jung Kyu Choi, Alessandro D’Urso, Mitch Trauernicht, Murtaza Shabbir-Hussain, Andrea E. Holmes and Milan Balaz

IJMS, 2011, 12, 8052
DOI: 10.3390/ijms12118052

A Histone-Like Protein Induces Plasmid DNA to Form Liquid Crystals in Vitro and Gene Compaction in Vivo

Shiyong Sun, Mingxue Liu, Faqin Dong, Shenglan Fan and Yanchen Yao

IJMS, 2013, 14, 23842
DOI: 10.3390/ijms141223842

Chirality as a tool in nucleic acid recognition: Principles and relevance in biotechnology and in medicinal chemistry

Roberto Corradini, Stefano Sforza, Tullia Tedeschi and Rosangela Marchelli

Chirality, 2007, 19, 269
DOI: 10.1002/chir.20372

Synchronized Chiral Induction between [5]Helicene–Spermine Ligand and B–Z DNA Transition

Kensuke Kawara, Genichiro Tsuji, Yosuke Taniguchi and Shigeki Sasaki

Chemistry A European J, 2017, 23, 1763
DOI: 10.1002/chem.201605276

Chiroptical Detection of Condensed Nickel(II)-Z-DNA in the Presence of the B-DNA Via Porphyrin Exciton Coupled Circular Dichroism

Jung Kyu Choi, Gevorg Sargsyan, Murtaza Shabbir-Hussain, Andrea E. Holmes and Milan Balaz

J. Phys. Chem. B, 2011, 115, 10182
DOI: 10.1021/jp2047213

Helix–helix transition of poly(β-phenylpropyl l-aspartate) embedded in stable helical poly(γ-phenylethyl glutamate) matrix

Koichi Sakajiri, Koji Satoh, Chu-Chun Yen, Masatoshi Tokita and Junji Watanabe

Polymer, 2011, 52, 5053
DOI: 10.1016/j.polymer.2011.09.008

Specific Induced Circular Dichroism and Enhanced B to Z Transitions of Duplexes Stabilized by Chromophore‐Linked Alkynylnucleoside Residues

Kazuhisa Fujimoto, Sayaka Aizawa, Ikko Oota, Junya Chiba and Masahiko Inouye

Chemistry A European J, 2010, 16, 2401
DOI: 10.1002/chem.200902882