Aakash
Kumar
*ab and
Dilip
Gersappe
*ab
aDepartment of Materials Science and Chemical Engineering, Stony Brook University, Stony Brook, NY 11794, USA. E-mail: aakash.kumar@stonybrook.edu
bInstitute for Advanced Computational Science, Stony Brook University, Stony Brook, NY 11794, USA. E-mail: dilip.gersappe@stonybrook.edu
First published on 27th October 2025
Examination of binding of cellulose to ice using ab initio modeling reveals that new C–O bonds are formed on the basal ice surfaces, where some of the O atoms are exposed at the surface due to missing H bonds. Further analysis suggests that the cellulose unit binds in such a way as to form a tetrahedral arrangement at the ice surface, evidenced by a geometric measure of tetrahedrality. This hypothesis is further validated for both primary and secondary prismatic planes. This leads us to conclude that in the case of cellulose molecules, binding at ice is dependent on preserving its tetrahedral bonding arrangement. Our findings suggest that the idea of tetrahedrality is very widely applicable to coordination ranging from water to ice-binding proteins, highlighting a design criterion for novel ice-binding/antifreeze proteins/materials.
Design, System, ApplicationAntifreeze proteins (AFPs), found in cold-adapted organisms such as arctic fish and bacteria, have the ability to bind to ice and inhibit its growth. These proteins can serve as a source of bio-inspiration for developing new antifreeze materials aimed at preventing infrastructure damage caused by freeze–thaw cycles. This is of paramount importance since the AFPs derived from these organisms are not suited for large-scale applications due to their limited availability, synthesis challenges, and high production costs. A promising alternative lies in the use of cellulosic biopolymers, which are abundant, environment friendly, and possess water retention similar to AFPs. Ab initio modeling offers a pathway to explore this bioinspired design strategy by providing a molecular-level understanding of the interactions of cellulose with ice, and more importantly whether ice-binding is possible. In this work, we provide a first of its kind first-principles probe into the nature of the interaction of cellulose with the ice surface by considering various basal and prismatic planes. We identify a key geometrical descriptor that can provide a qualitative and quantitative picture of the cellulose–ice binding leading to a framework that could be utilized to design sustainable antifreeze materials. |
In nature, several organisms such as bacteria9 and Arctic fish10 survive extreme cold by preventing ice formation even under sub-zero conditions. They achieve this by producing protein molecules that bind to specific planes of ice crystals, thereby inhibiting their growth. Understanding these interactions has been a key focus in the design of novel antifreeze materials.11,12 Building on this foundation, our work aims to uncover the principles behind designing novel antifreeze biopolymers that mimic this natural behavior. Typically, antifreeze glycoproteins (AFGPs)13 consist of sugar derivatives such as polysachharide units connected by glycosidic bonds. In general, a mechanistic understanding of antifreeze proteins (AFPs) remains far from being completely understood, although various models have been put forth to explain how the ice-growth is inhibited.14
The widespread use of AFGPs is limited by challenges in their synthesis and issues related to scalability.13 To overcome these limitations, the design of AFGP analogs must incorporate both the use of naturally abundant materials and environmentally friendly processes. Sustainability—guided by the principles of the circular economy15—is a key consideration in this approach, emphasizing the use of materials that can be safely recycled back into the environment.15 One possible candidate, cellulose, (C6H10O5)n, containing the β (1–4) glycosidic bond between their glucopyranose rings, has recently shown to possess ice recrystallization inhibition16 as well as ice nucleation activity.17 As a potential antifreeze material design strategy promoting sustainability, we therefore focus on cellulose, which is the most abundant biopolymer on the planet, can be recovered from agricultural waste, and is a great prototype for the circular economy18 for various applications ranging from biological19 to electronics.20
In this work, we focus on the interaction of cellulose with ice to gain a fundamental understanding of how cellulosic materials could potentially be designed to act as ice nucleating/antifreeze agents. Ice, the solid phase of water, is one of the most widely studied materials, and even to this date, an understanding of its structure is far from complete, with new ice phases being reported by researchers regularly.22 However, hexagonal ice (Ih, sometimes also denoted as Ih), remains the most widely observed and studied. Therefore, we focus on investigating the binding of cellulose with hexagonal ice.
Previous ab initio modeling studies have focused on water adsorption on bulk cellulose substrates,23 but to the best of our knowledge the behavior of cellulose adsorption on ice/water has not been given much attention. Studies of pure ice surfaces24 as well as metal and inorganic molecules such as NH3 (ref. 25) adsorption on the ice surface have been carried out and also point to the importance of proton order/disorder at the ice surface as investigated by Buch et al.26 While the amphiphilic nature of cellulose has been discussed in the literature for some time,27 Alqus et al.28 conducted a thorough investigation of the amphiphilicity of cellulose and its binding to water in the presence of graphene using molecular dynamics simulations. They found that the –CH– abundant face (100) remained relatively intact with their interface with graphene, while a significant rearrangement was observed for the –OH dominant face (010), such that the reoriented cellulose again presented –CH– groups to the graphene sheet, strongly outlining the partly hydrophobic nature of cellulose and providing an indirect evidence of its amphiphilicity. Recently, Bruel et al.29 have experimentally validated the amphiphilic nature of cellulose to be connected to its anisotropy in the case of cellulose nanocrystals (CNCs). Nanocellulose have already shown to be active ice recrystallization inhibition (IRI) agents16 with potential applications as cryoprotectants in food (e.g. ice cream30) industry, as well as tissue engineering.31
While there is enough evidence about the potential of cellulose to inhibit ice-growth, the exact mechanism of its antifreeze behavior is very poorly understood. Nanocrystalline cellulose containing beta glycosidic units have –OH groups attached to the pyranose ring similar to commonly used and well-studied antifreeze agents, e.g. polyvinyl alcohol (PVA). PVA is known to recognize and bind to the prismatic ice planes inhibiting ice recrystallization.32,33 As a first step to explore the antifreeze behavior of cellulose, we present a first study of cellulose binding to ice-surfaces. Through this work, we also aim to develop a preliminary framework to explore the binding characteristics of antifreeze/ice-nucleating agents on ice surfaces towards building a model that would include hydration in subsequent work.
Cellulose exists in nature in its most stable form Iβ, which is composed of H-bonded chains of D-glucopyranose units. In cellulose Iβ, there are two distinct chains, each of them forming a sheet of parallel chains (Fig. 1a), that stack together to give the 3D monoclinic crystal structure, space group P1121. The other allotrope, Iα consists of one unique chain that stacks to form the 3D triclinic crystal structure.
![]() | ||
| Fig. 1 (a) Relaxed cellulose Iβ unit cell, and (b) the H-bond network present in the cellulose sheet and the cellulose unit (right) extracted and the atomic labeling shown as in Wada et al.21 C, H, and O atoms are shown in brown, pink, and red colors as presented in the legend in the top right. | ||
In studies on ice, the question of proton order/disorder has been often addressed in several modeling studies in the last two decades.24,26 Pan et al.24 elucidated that the distribution of the energetics of the various proton/disordered ice surfaces spanned more than an order of magnitude greater than that of the bulk ice, due to the sensitivity of the charge–charge interactions of the dangling –OH bonds, which was also argued by Fletcher.39 In this work, we extend the question to the role of adsorbents, and ask: are the antifreeze properties related to the dangling –OH bonds on the ice surface? Are van der Waals (vdW) interactions the most important in deciding the nature of binding of such antifreeze agents? We find that besides vdW bonding due to new H bonds between cellulose and ice, new non-covalent ionic C–O bonds are equally important in deciding the strong hydrophilic binding between cellulose and ice surfaces. We also note that excess protons on the ice surface impede this bond formation, and also lead to rejection of protons, and in some cases water molecules, from the ice surface.
We focus on whether the concentration of protons at the surface impacts the binding of cellulose to the ice basal surface. For this investigation, we include the Fletcher surface,39 which is the striped surface (Fig. 2a) that is the most stable until a critical temperature (30 K for basal planes), when the disordered surface becomes more stable. In addition, we also consider the fully hydroxylated basal surface where all the H bonds of the terminating O atoms are satisfied, to compare it to the pristine basal surface, with O atoms missing H bonds in the out-of-plane direction. Finally, we also discuss the binding of cellulose to prismatic planes, and compare it to the observed behavior for the basal plane. We generalize our findings to argue that cellulose can serve as an antifreeze agent, and being a naturally occurring polymer, can find critical applications in sustainable solutions to thwart the infrastructure damage posed by irregular freeze–thaw cycles across the Arctic region.
It has been established that the microscopic structural properties of water are connected to its second shell.40 Russo et al.41 found that the local translation order of the second shell can be captured by considering the directional intermolecular H bonds, suggesting the tetrahedral ordering of water to be central to this structural characterization. More recently Klatt et al.42 demonstrated that the local density fluctuations in liquid water and its higher order moments, all detect tetrahedrality, which essentially is a many-body property. Given the role of tetrahedrality in describing water properties and anomalies, we apply this idea to explore the binding of cellulose to ice surfaces. We show that tetrahedrality can not only detect this binding process but can also be used to quantify the binding energies for ice surfaces.
For the hexagonal ice (Ih), we use a 16 water molecule orthorhombic supercell as presented by Morrison et al.37 We choose this supercell to be able to include the inherent proton disorder in bulk ice Ih using a relatively larger cell that has a zero net dipole moment. This structure also presents the terminating H-atoms in the ‘up’ position, that has been experimentally detected to be the case for the basal plane of ice Ih using vibrational spectroscopy,55 and most recently by direct visualization of the basal (0001) surface of ice Ih using atomic-resolution imaging.56 The kinetic energy cut-off of the plane-wave expansion was 900 eV. For the relaxation of the supercell geometry, a Γ-centered Monkhorst–Pack grid of 8 × 8 × 8 k-points was used. The optimization was continued until the total energy change of the supercell for the SCF cycle was less than 10−5 eV and the norm of the forces on each atom was less than 0.01 eV Å−1. The ice–cellulose interfaces were optimized at constant volume with the cellulose unit on the relaxed ice surfaces having a vacuum length of 25 Å normal to the interface, with an energy cut-off of 900 eV with the convergence criteria of total energy change of SCF cycle at 10−5 eV and the norm of the forces on each atom less than 0.01 eV Å−1 at the Γ K-point for the evaluation of the low-energy configurations for all cases. The various basal and prismatic surfaces were constructed by a 2 × 2 repetition of the optimized ice Ih supercell in the in-plane direction and containing 3–4 bilayers (section 3.1.1) in the out-of-plane direction to the surface with vacuum. We used the fletcher surface from Engel et al.57 to create the ice interface with cellulose.
| Eihetero = Eice + Ecellulose + Eibind | (1) |
Similarly, we can compute the binding energy of cellulose for a different configuration j as,
| Ejhetero = Eice + Ecellulose + Ejbind | (2) |
It can be seen from eqn (1) and (2) that the relative binding energy between two positions i and j can be expressed as
| Eihetero − Ejhetero = Eibind − Ejbind | (3) |
In other words, the total energy difference between two configurations of cellulose on an ice surface is equal to their binding energy difference.
| PBE-D (Li23 2011) | PBE-D2 (Bučko35 2011) | PBE-D2 (Kubicki36 2013) | PBE-D3 (this work) | Experiment34 | |
|---|---|---|---|---|---|
| a Φ is defined as O5′–C1′–O1–C4. b Ψ as C1′–O1–C4–C5. c χ as O6–C6′–C5′–O5′. d χ′ as O6–C6′–C5′–C4′. | |||||
| a (intersheet)(Å) | 7.85 | 7.57 | 7.55 | 7.82 | 7.78 |
| b (interchain)(Å) | 8.18 | 8.14 | 8.14 | 8.16 | 8.20 |
| c (intrachain)(Å) | 10.47 | 10.39 | 10.40 | 10.41 | 10.38 |
| γ(°) | 96.6 | 96.5 | 96.4 | 96.6 | 96.5 |
| Φ(°)a | 95, 95 | 93, 94 | 93, 94 | 94, 94 | 99, 89 |
| Ψ(°)b | 144, 143 | 143, 145 | 143, 145 | 143, 144 | 142, 147 |
| χ(°)c | 164, 165 | 168, 165 | — | 167, 165 | 170, 158 |
| χ′(°)d | 78, 77 | 74, 77 | — | 75, 76 | 70, 83 |
| PBE-D3 | |
|---|---|
| a (Å) | 8.70 |
| b (Å) | 7.53 |
| c (Å) | 7.11 |
![]() | (4) |
From Fig. 3, it can be seen that the surface energy is rapidly converged within 2–3 bilayers for all ice surfaces, and increasing the number of bilayers does not provide an improvement in the accuracy of the surface energy. The ice basal (0001) surface energy is around 14 meV Å−2, within the predicted range of 13–15 meV Å−2 by other PBE results in the literature.24 The slight oscillation seen in the case of the prismatic surfaces around 16–17 meV Å−2 is due to the different configurations of the H atoms on the two surfaces for different number of bilayers in the ice slab. We note that this is an extremely small variation. Therefore, we use 3 bilayers of basal and primary prismatic planes to construct the adsorbate for the cellulose unit in the present work. In the case of the secondary prismatic surface, the odd and the even number of bilayers lead to a switching of orientations of the surface H atoms such that in the first case (odd number of bilayers) some O atoms do not have out-of-plane H atoms, while in the second case (even number of bilayers) all O atoms have some out-of-plane H atoms. Therefore, for the secondary prismatic ice slab, we choose 4 bilayers to ensure both the surfaces in the supercell have similarly oriented H atoms in both in-plane and out-of-plane directions.
The binding energy change for the three basal surface configurations are shown in Fig. 4c–e, where the darker regions suggest greater binding between the cellulose and the ice surface. The configurations with the highest relative binding energies for various translations for each of the ice surfaces are annotated by numbers. The range of the binding energy difference is ∼3 eV for the fletcher (c) and the pristine (d) basal surfaces, whereas it spans about 20 eV for the fully hydroxylated (e) surface as depicted in Fig. 4b. We find that the structures with the highest relative binding energy (structures 1–6) all show the formation of a C1(cellulose)–O (ice) bond at the interface (Fig. 5a), resulting in a configuration that is ∼3 eV lower in energy than the other relaxed configurations of cellulose for different translations on the ice surface. Furthermore, we find that this C–O bond formation facilitates the formation of a tetrahedral geometry at the cellulose–ice interface as portrayed in Fig. 5b. As water and ice both have tetrahedral geometry, we postulate that the affinity of cellulose to the ice surface is associated with its ability to retain the tetrahedral coordination of ice by forming this bond. Electronic density of states (DOS) of one of the preferred binding configurations (structure 5) shows that the cellulose unit dopes electrons uniformly in the valence band region, including right at the valence band edge (Fig. S1).
Upon further examination of configurations of the highest relative binding energy for the latter case (structures 7 and 8), we find that the dissociation of the surface layers/cellulose in the form of H atoms and molecules (Fig. S2) takes place. It is important to note that Buch26 had also pointed out that an all proton terminated ice Ih surface should be unlikely based on their molecular dynamics simulations, and our findings suggest the same to hold even in the case of a cellulose molecule in the process of binding to it.
This explains the binding of cellulose unit to the fletcher and the pristine (partially hydroxylated) basal surface, where new H-bonds are seen. Specifically, we note the formation of 4–5 H bonds in each of their most stable configurations, where 3 H bonds are formed with the O atoms from cellulose, while 1–2 H-bonds form with the O atoms present on the ice surface (Table S1). While we observe the formation of new H-bonds between cellulose and ice surface in all our basal surfaces, it is noted that the hydroxylated surface do not lead to the stable cellulose–ice bound configurations, as they prohibit the formation of tetrahedral coordination between the adsorbed cellulose and the ice surface, as observed for the fletcher and the pristine surfaces, where the presence of O atoms (lacking a H bond above) at the surface enables the formation of this geometry (Fig. 5).
On the contrary, in the case of fully hydroxylated ice Ih (0001), we observe dissociation of this surface which suggests that it is thermodynamically more favorable for cellulose to bind to the partially hydroxylated ice surfaces than to the fully hydroxylated one where no unbonded O atoms exist. Thus it can be concluded that the binding of cellulose is dependent on both a) the ability to form new H-bonds and b) the formation of tetrahedral coordination via the C1(cellulose)–O(ice) bond when possible (Fig. 5). It should be pointed out that the same binding mechanisms have been demonstrated to be active in the case of several AFPs.65
0) and Fig. 6d for the secondary prismatic (
2
0) planes. For both prismatic planes, we again observe that the configurations associated with the largest relative binding of cellulose show the formation of a new C–O bond at the interface. Furthermore, as in the case of the basal planes, we note the formation of 5–6 H bonds (Table S1). The range of the binding energy difference is of the same order as in the case of basal surfaces, suggesting that cellulose might possess a relatively equal degree of affinity with the prismatic ice surfaces.
However, a closer examination of the preferred binding configurations (structures 9–12) reveals that the formation of this new C–O bond is accompanied by a release of a water molecule (Fig. S3) that was not observed in the case of basal planes. One plausible reason for this observation could be a different mechanism of ice-binding where some water molecules are displaced to aid the process, as in the case for the AFP in the bacterium Marinomonas primoryensis (MpAFP) binding on the primary prism planes shown by Davies.66 Another possible reason for this phenomenon may be the destabilization of the ice surface by the hydrophobic part of cellulose, and therefore attributed to the greater exhibition of the amphiphilic nature of cellulose on prismatic than basal planes. It is interesting to note that for proteins that bind to multiple planes, slight changes in their ice-binding characteristics can be consequential in ice-shaping as seen to be the case for MpAFP that binds to both basal and prismatic planes,67 and ice morphologies resulting from different ice growth kinetics on the basal and the prismatic planes as was noted in the case of Fragilariopsis cylindrus.68 Therefore, we believe cellulose binding to ice should lead to varying ice-growth patterns depending on the proportion of binding on the basal and the prismatic planes. Importantly, our calculations suggest that cellulose binding on both basal and prismatic planes are energetically favored, with the mechanism of ice-binding appearing to be more complex for the prismatic planes.
We observe that a tetrahedral coordination is formed around the interfacial C–O bond at the interface between the C and H atoms of cellulose and O and H atoms of ice as shown in Fig. 5b. To quantify this binding characteristic, we compute the degree of tetrahedrality q, as discussed by Errington and Debenedetti69 originally based on the parameter introduced by Chau and Hardwick.70 The degree of tetrahedrality is expressed as
![]() | (5) |
Ψjk corresponds to the angles around the C atom with its neighbors j and k. For all these configurations, q is almost 1 suggesting a near-tetrahedron geometry around the cellulose–ice interface. For comparison, we also relaxed 4, 6, and 8 water molecules on the (0001) surface and noticed the average q to be very close to 1. These are presented in Fig. 7. Interestingly, Nutt and Smith71 had noted that the hydration water near the ice-binding face of the antifreeze protein of the spruce budworm, Choristoneura fumiferana can rearrange to enhance the local tetrahedrality to facilitate the ice-binding.
![]() | ||
| Fig. 7 Computed values of the degree of tetrahedrality q for the configurations with the highest relative binding energy from Fig. 4 and 6. | ||
In several AFPs found in cold-adapted organisms, anchored clathrate motifs were determined to form between the AFP and the ice-binding surfaces in the cases of the bacteria Marinomonas primoryensis,9 and the insect Tenebrio molitor.72,73 Furthermore, it has been established that the hydration water at the ice binding surface of antifreeze protein has an enhanced tetrahedral geometry that has also been seen in the hydration water of hydrophobic groups of alcohols.74 In the case of the antifreeze protein, however, the tetrahedral character is much more pronounced than in the case of alcohols and, is ice-like.75 In the case of the AFP found in ocean pout, the tetrahedral water cluster at the hydrophobic region of the ice-binding surface was experimentally determined by joint neutron and X-ray diffraction,76 further supporting the principal argument of tetrahedrality. From an energetic analysis, however, it is difficult to establish this mechanism as ab initio calculations employed in the present work are limited by the system size that they can explicitly model thus prohibiting us from including water molecules in our model. This is primarily due to the fact that any atomistic model that includes water molecules needs to carefully account for the statistics associated with the configuration of the water layer. We do aim to fill this gap in our next work where we are developing a model that accounts for the entropy of water molecules on top of the ice surface. In the view of these established results, we strongly suggest that the enhanced tetrahedral geometry observed at the cellulose–ice interfaces when the hydrophobic face of cellulose presents itself to the various ice planes, is an indirect evidence of the favored tetrahedral coordination of the hydration/interfacial water at the AFP–ice interface, especially prominent in the case of cellulose binding to prismatic planes leading to displacement of a water molecule. Therefore, our results are a first ab initio validation of this phenomenon.
Our findings pave a way towards the design principles of cellulose based antifreeze materials inspired by arctic organisms, and suggest that cellulose binds to ice in order to preserve its tetrahedral bonding (ice-like) pattern. As cellulose also exhibits a dominant network of H-bonds, as in the case of water and ice, it explains the natural affinity between ice and cellulose to bind that extends the tetrahedral bonding in ice; even though cellulose is considered an amphiphilic material possessing both hydrophilic and hydrophobic groups. As hydrophobic components are commonly found in the AFPs/AFGPs that bind to ice, we believe this to be the case in cellulose and propose that the degree of tetrahedrality could be a critical design parameter for sustainable antifreeze materials.
Supplementary information: density of states of the ice surface without and with cellulose adsorbed, relaxed ice–cellulose structures showing dissociation of molecules on the basal ice plane, ice–cellulose structures for prismatic plane, H-bond analysis. See DOI: https://doi.org/10.1039/d5me00137d.
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