Cecilia
Wetzl
ab,
Sergi
Brosel-Oliu
c,
Marco
Carini
a,
Desiré
Di Silvio
a,
Xavi
Illa
cd,
Rosa
Villa
cd,
Anton
Guimera
cd,
Elisabet
Prats-Alfonso
*cd,
Maurizio
Prato
*aef and
Alejandro
Criado
*ag
aCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramón 194, 20014, Donostia-San Sebastián, Spain. E-mail: mprato@cicbiomagune.es
bUniversity of the Basque Country, UPV-EHU, 20018 San Sebastián, Spain
cInstituto de Microelectrónica de Barcelona, IMB-CNM (CSIC), Campus UAB, Bellaterra, Spain. E-mail: elisabet.prats@csic.es
dCentro de Investigación Biomédica en Red de Bioingeniería, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, Spain
eIkerbasque, Basque Foundation for Science, Bilbao, Spain
fDipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, Trieste, Italy
gUniversidade da Coruña, CICA – Centro Interdisciplinar de Química e Bioloxía, Rúa as Carballeiras, 15071 A Coruña, Spain. E-mail: a.criado@udc.es
First published on 19th September 2023
In the last decade, solution-gated graphene field effect transistors (GFETs) showed their versatility in the development of a miniaturized multiplexed platform for electrophysiological recordings and sensing. Due to their working mechanism, the surface functionalisation and immobilisation of receptors are pivotal to ensure the proper functioning of devices. Herein, we present a controlled covalent functionalisation strategy based on molecular design and electrochemical triggering, which provide a monolayer-like functionalisation of micro-GFET arrays retaining the electronic properties of graphenes. The functionalisation layer as a receptor was then employed as the linker for serotonin aptamer conjugation. The micro-GFET arrays display sensitivity toward the target analyte in the micromolar range in a physiological buffer (PBS 10 mM). The sensor allows the in-flow real-time monitoring of serotonin transient concentrations with fast and reversible responses.
It is worth noting that Szunerits et al. proposed to control covalent grafting and obtain functional GFET-based cardiac troponin sensors using a protected aryl diazonium salt to induce monolayer-like functionalisation.25,28,29 The use of bulky groups that hinder the disruption of graphene lattices was extensively studied by the work of De Feyter's group, where the fine-tuning of the graphene functionalisation was obtained by grafting aryl diazonium salts bearing tert-butyl groups by electrochemistry.23
In this work, we developed a new strategy based on molecular design and electrochemical triggering to functionalize micro-GFET arrays in a controlled and stable manner, obtaining a monolayer-like functionalisation. Our synthesized diazonium salts, bearing a maleimide moiety, were then employed as linkers to anchor our receptor, a serotonin stem-loop aptamer (Fig. 1). The peculiarity of this oligonucleotide chain family is the capability of selectively binding serotonin, with a dissociation constant of 30 nM,30 and then change their conformation upon recognition. The so-produced conformation allows for the detection of small molecules by charge-sensitive devices such as GFETs. Indeed, the transduction methodology of these devices is based on the so-called field effect, thus the capability of the channel material (i.e., graphene) of changing its electrical conductivity upon the application of an external electric field. Accordingly, while the detection of charged macromolecules as proteins is relatively easy, the recognition of small molecules is still an open challenge. This receptor has already been tested in different sensor architectures such as metal oxide FETs31 and glass nanopipettes32,33 to enable the fast and reversible real-time monitoring of the neurotransmitter. Additionally, similar oligonucleotides have been recently employed to develop a GFET-based sensor for dopamine and serotonin.20,34 This proof of concept validated the possibility of employing covalent functionalisation and aptameric recognition for the co-detection of dopamine and serotonin under physiological conditions. To obtain a functional device for the real-time neurotransmitter monitoring, still some further implementations are required. Among the others, the use of a multichannel array working in flow conditions and capable of recording in a reversible manner has not yet been reported.
Fig. 1 Schematic of the aptamer conjugation on functionalized GFETs (mMAL-GFETs) and subsequent serotonin recognition. |
In this work, we aimed to go a step closer to the obtention of a new platform for biomarker real-time monitoring with enhanced performances combining our innovative and controlled covalent functionalisation strategy, the micro-GFET array technology and the aptameric recognition system.
To avoid the dendritic growth of the aryl diazonium salt moieties and obtain monolayer-like functionalisation, we designed an aryl diazonium salt bearing two methyl groups in the meta-position to the diazonium. The utilisation of bulky groups in these positions was proved to be efficient to prevent the oligomerisation of the aryl diazonium salts.23 Additionally, our salt includes a maleimide group in the para position, employed for the aptamer conjugation by the thiol–maleimide Michael addition click reaction. To assess the efficiency of our molecular design in preventing the oligomerisation of the diazonium salt, we performed a comparative study of 4-(N-maleimido)-3,5-dimethylbenzenediazonium tetrafluoroborate salt (mMAL-DS) and 4-(N-maleimido)-benzenediazonium tetrafluoroborate salt (MAL-DS)-functionalised graphenes (Fig. 2). The reaction was performed on the graphene prepared by chemical vapour deposition and deposited on silicon oxide (SiO2/CVDg). The aryl diazonium salt solution (20 mM in water) was added dropwise to the SiO2/CVDg substrate soaked in water at r.t. It is worth noting that the occurrence of this spontaneous reaction could be attributed to impurities originating from the polymers employed in the transistor fabrication process, as well as the polar adsorbates on SiO2.37 Thus, in this electron transfer reaction, these substances facilitate the transfer of electrons from the occupied states of graphenes to the occupied states of the reacting species. After the reaction, the features of the functionalisation layer were evaluated by a combination of AFM and Raman spectroscopy analyses. First, by an AFM scratching experiment, we calculated the height of the functionalisation layer on the two substrates. This technique involves scratching the surface of the substrate with the AFM tip in a “contact mode” experimental setup, removing graphenes from the surface in a controlled way. By studying the height profile of the image and comparing the graphene with bare silicon oxide, the height of the functionalisation layer can be calculated. Indeed, since the height of the bare graphene is approximately 1.14 nm (Fig. S1†), we calculated the height of the two functionalised materials by subtraction, which resulted in heights of 0.20 nm and 2.58 nm for mMAL-DS-functionalised graphenes (SiO2/CVDg-mMAL) and MAL-DS-functionalised graphenes (SiO2/CVDg-MAL), respectively (Fig. 3A). This experimental evidence confirms the formation of a monolayer for the methylated salt and a multilayer for the unmethylated one. This result highlights the importance of the linker length for the sensing application. Indeed, as mentioned above, under physiological conditions, λD is almost 1 nm. Thus, the use of our molecularly designed mMAL-DS allows for anchoring the receptor within this distance, while the use of the unhindered MAL-DS would result in the receptor lying outside of the sensitive area of graphene transistors. Additional information could be obtained by performing AFM in the tapping mode. In previously published works,23 a remarkable change in the roughness (height distribution) of the substrate was associated with the dendritic growth of the functionalisation layer, while the monolayer-like functionalisation resulted in a retained roughness or minimal change.2 Therefore, the roughness of AFM images for pristine and functionalised samples using mMAL-DS, MAL-DS and 4-nitrobenzenediazonium tetrafluoroborate (NO2-DS) was compared. NO2-DS was chosen as a highly reactive aryl diazonium salt that is likely to form oligomers on the surface.23,38 The comparison presented in Fig. S2† showed that, while functionalisation with MAL-DS and NO2-DS induced a significant increase in the surface roughness compared to the pristine graphene, SiO2/CVDg-mMAL samples retained almost the same roughness. This result confirms our previous assumptions about oligomerisation.
Fig. 2 Schematic of the functionalisation using mMAL-DS (right) and MAL-DS (left) leading to monolayer-like and dendritic-like functionalisation, respectively. |
Raman spectroscopy is a powerful technique in the study of chemical modification of graphenes. Usually, the increase in the D band with respect to the G band (ID/IG) is associated with the carbon hybridisation change from sp2 to sp3 within the lattice and is a common way to evaluate the material covalent functionalisation. In our samples, the increase in the D band suggests that the functionalisation degree of the two substrates is similar, with an ID/IG ratio of 0.16 and 0.18 for SiO2/CVDg-mMAL and SiO2/CVDg-MAL, respectively (Fig. 3B). However, the Raman spectra of the SiO2/CVDg-MAL showed two extra peaks at 1400 and 1450 cm−1, typically obtained when using other “unprotected” salts, like the phenyl acetic diazonium salt (COOH-DS) or NO2-DS that are most likely forming oligomers during the functionalisation (Fig. S3†).38 The origin of these extra peaks is not completely understood nor extensively studied in the literature and our hypothesis is that it could be related to some stretching modes of the polyphenyl-like oligomers.39 Indeed, these peaks did not appear on the SiO2/CVDg-mMAL spectrum, where oligomerisation was prevented. The XPS analysis performed on the functionalised samples also corroborated the introduction of the maleimide groups by an increase in the N atomic percentage for both functionalisation (Fig. S4 and Table S1†). This outcome aligns with the previously reported findings.40 Furthermore, looking at the high-resolution C 1s spectra, an increase in the component associated with the N–CO bond at 288.1 eV is noticed, related to the introduction of imides onto the surface.
Certainly, the electrochemical method's control is highly adjustable, which allows reaching a degree of functionalization equivalent to that observed in the case of the free electrochemical strategy. After a comparative analysis of the data obtained by XPS and Raman spectroscopy in relation to electrochemical and free electrochemical modifications of graphenes, a consistent indication of similar functionalization is observed. XPS spectroscopy reveals congruent levels of N 1s content (a difference in the nitrogen content after functionalization, 1.2 (Table S1†) and 1.6 at% (Table S2†), for the electrochemical-free strategy and electrochemical reduction through CA for 250 seconds, respectively). Likewise, Raman spectroscopy demonstrates analogous manifestations of sp3 defects (ID/IG is 0.16 (Fig. 3F) and 0.19 (Fig. S6A†), for the electrochemical-free strategy and electrochemical reduction through CA for 250 seconds, respectively).
To fully characterize our system, the number of available maleimide groups immobilized on the surface of GFETs was quantified by conjugation with a ferrocene redox mediator derivative bearing a terminal thiol. This methodology is widely used in the surface coverage study of different electrochemical systems.28,42 Indeed, the concentration of conjugated ferrocene can be calculated taking advantage of its electroactivity by performing CV on the functionalised electrode (Fig. S9†). For our system, we calculated a surface coverage of 2.6 × 10−11 mol cm−2, that is comparable to other reported functionalised GFETs.25
Once corroborated our functionalisation on macro-GFETs, we translated it to the more complex system of the micro-GFET array, composed of 48 channels divided into two groups of 24 (Fig. 5A), in which graphene channels are 50 × 50 μm2 in area. The functionalisation set up is analogous to the one employed for macro-GFETs, with 24 channels of the micro-GFET connected as the working electrode in a three-electrode configuration. For this system, we found that by applying a reduction potential of −0.5 V vs. Ag/AgCl (KCl 3 M) for 100 seconds, a good compromise between the functionalisation degree and electronic property preservation is achieved. After grafting, the transfer curve recorded on the functionalised device (mMAL-GFET) resulted in a slight right shift due to p-doping typical of aryl diazonium grafting (Fig. 5C),25,28 with no remarkable changes in the mobility of graphenes (Fig. S10†). The maleimide group introduced on the graphene surface of the micro-GFET obtained by electrochemical functionalisation was subsequently utilized to conjugate the serotonin stem-loop aptamer. The conjugation process involved the typical reaction between the thiol moiety introduced at the 5′ ends of the aptamer chain and the maleimide on the surface. Thus, the aptamer was pre-treated with a tris(2-carboxyethyl)phosphine (TCEP) reducing agent to ensure the availability of free thiols. Additionally, before the incubation, the aptamer was refolded by 10 minutes heating at 90 °C followed by cooling at r.t. The aptamer was then diluted to a 1 μM final concentration in 10 mM PBS and incubated on the graphene surface overnight. The unreacted maleimide sites remaining after the incubation were blocked using a 2-mercaptoethanol solution to ensure that no reactive species is left on the surface. The transfer curves recorded after the conjugation and blocking (APT-GFETs) resulted in a negative shift of the Dirac point (Fig. 5C). As previously described, the transport characteristics of graphene in a solution-gated GFET are led by the graphene/electrolyte interface. In the case of aptamer conjugation, predicting the doping sense becomes complicated due to the adsorption of DNA and counter ions on graphenes, as well as the morphology of DNA chain. In particular, the n-doping registered in our case is typical of single-stranded DNA chains. This is because the non-hybridized nucleosides freely interact with graphenes, competing with the phosphate group for doping.43 Additionally, in the case of single-stranded DNA possessing a hairpin loop, such as in our study, the interaction of the nucleosides prevails, resulting in a left shift of the transfer curve, as observed in most reported cases.25,34,43 Moreover, in the case of aptamer conjugation, the modification does not alter the electronic properties of the micro-GFET.
During the measurements, the device current was constantly recorded while changing the flowing solution. The experiment involved recording the current between the source and the drain (IDS) vs. time at a fixed polarisation voltage (VGS). For our system, we selected a potential of 0 V vs. Ag/AgCl (KCl 3 M) since the transfer curve exhibited greater reliability and stability in the hole domain as opposed to the electron domain. The calibration was carried out by injecting serotonin at a concentration ranging between 1 μM and 500 μM in 10 mM PBS alternated with PBS injections, using a flow injector. Upon addition of serotonin, an increase in current at VGS = 0 V was recorded. This increment in current is associated with a positive shift of the transfer curve, indicating p-doping caused by the aptamer conformational change. This behaviour is in accordance with the described recognition mechanism, where the binding of the analyte straightens the folded aptamer and drives it away from the graphene surface (Fig. 6A).30 Since the introduction of the aptamer induced a negative shift to the Dirac point of micro-GFETs, the recognition event was characterized by a positive shift because of the straightening of the oligonucleotide. The recorded signal is then calibrated by employing the micro-GFET channel transfer curve recorded before the time plot to pass from current (IDS) vs. time to voltage (VGS) vs. time (Fig. 6B). This calibration procedure is convenient, as it helps to eliminate the variations associated with different current levels and resistance for each channel.
The calibrated response of a micro-GFET array is included in Fig. 6C (and Fig. S12†). Here, the response given by the subsequent addition of serotonin at different concentrations alternated with 10 mM PBS injection evidenced the reversible nature of the recognition system. This reversibility of the binding is possible thanks to the labile interaction between the receptor and the serotonin, with a reported dissociation constant of 30 nM in solutions.30 From the calibrated time plot (IDSvs. time), we extracted the voltage values corresponding at the end of the plateau for each addition before injecting the next solution. Thus, analysing all the channels, the dot plot presented in Fig. 6D was constructed. This result demonstrates the power of working with the micro-GFET array, where a statistically significant result is obtained by a single experiment. Due to inhomogeneity in the fabrication characteristic and current drift of the different channels, the response has a wide SD, affecting the quality of the measure. Additionally, it is worth mentioning that SD remarkably increased after the addition of the higher concentration of serotonin. This suggests that not complete reversibility is produced after saturation.
The signal from each GFET was then normalized by subtracting the PBS signal intensity recorded before each addition to construct the calibration curve (Fig. 6E). The calibration exhibited a typical binding-to-saturation behaviour that was fit using a sigmoid function. The signal is proportional to the concentration of serotonin, reaching a plateau at 500 μM and is reversed by the addition of 10 mM PBS. The sensitivity (S) of the sensor, which is defined as ΔIDS/ΔVGS, was calculated as the slope of the linear regression of the linear portion of the calibration curve (1–100 μM). This value was employed, along with the noise (σ, standard deviation of the blank), to calculate the limit of detection (LOD), which resulted to be of 11.4 μM (see ESI†). To confirm that the recorded signal is attributed to the aptamer–serotonin interaction, we conducted a control experiment by modifying a micro-GFET array with a scrambled sequence of the serotonin aptamer (sAPT-GFET). This scrambled sequence has already been tested and described to have low serotonin recognition efficiency.30,32 As shown in Fig. 6E, the signal produced by the scrambled sequence interaction is negligible compared to the correct sequence, thus confirming the recognition conformational change mechanism. To additionally assess the reversibility and stability of our system, we performed a random addition experiment. Here, we added the serotonin solution in a random order using the same setup and operating method of the standard calibration, instead of an increasing manner as previously done (Fig. 6F). Our sensor demonstrated the ability to record signals proportional to the concentration in a random manner when operating below the saturation limit (500 μM). This confirms the recovery of the receptor's starting conformation upon the addition of PBS after recognition.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d3nr04153k |
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