Issue 10, 2019

Single cell transcriptomics: moving towards multi-omics

Abstract

As the basic units of life, cells present dramatic heterogeneity which, although crucial to an organism's behavior, is undetected by bulk analysis. Recently, much attention has been paid to reveal cellular types and states at the single-cell level including genome, transcriptome, epigenome or proteome—based on sequencing and immunological methods, etc. Among these approaches, transcriptomic analysis provides knowledge of the molecular linkages between genetic information and the proteome, leading to a comprehensive understanding of biological processes and diseases. Compared to single-dimensional inspection, multi-dimensional analysis combines the transcriptome with other “omics” to enable a comprehensive understanding of single-cell processes and functions. Moreover, compared to separate observations or single snapshots, spatial dimension and lineage time tracing can provide a more multifaceted understanding of the micro-environment and dynamic processes. In this review, we will introduce current transcriptomic analysis methods, as well as their combination with other omics methods including genomic, proteomic, and epigenetic approaches. Multi-dimensional analysis using these approaches for spatial positioning and lineage tracing applications will be reviewed. The future perspectives of single-cell multi-omics analysis based on the transcriptome will also be discussed.

Graphical abstract: Single cell transcriptomics: moving towards multi-omics

Article information

Article type
Minireview
Submitted
25 ستمبر 2018
Accepted
19 فرؤری 2019
First published
21 فرؤری 2019

Analyst, 2019,144, 3172-3189

Single cell transcriptomics: moving towards multi-omics

Y. Song, X. Xu, W. Wang, T. Tian, Z. Zhu and C. Yang, Analyst, 2019, 144, 3172 DOI: 10.1039/C8AN01852A

To request permission to reproduce material from this article, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements