Daisy R. S.
Pooler
,
Daniel
Doellerer
,
Stefano
Crespi
and
Ben L.
Feringa
*
Stratingh Institute for Chemistry, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands. E-mail: b.l.feringa@rug.nl
First published on 8th March 2022
Molecular motors are essential components of artificial molecular machines, which can be used to manipulate and amplify mechanical motion at the nanoscale to create machine-like function. Since the discovery of light-driven rotary molecular motors, the field has been widely developed, including the introduction of molecular motors based on oxindole by our group in 2019. The rotational properties of molecular motors, e.g. absorption wavelength, quantum yield and rotation speed, often critically depend on substituent effects. Up to now, the substituent effects of oxindole-based molecular motors have not yet been investigated. Herein, we present a family of oxindole-based molecular motors functionalised at three different positions on the motor core, with either CN or OMe groups. The motors prepared in this work retain the favourable features of oxindole-based motors, i.e. simple synthesis and visible light addressability. We find that functionalisation has substantial effects on the absorption wavelength of the motors, meanwhile the rotation speed is unaffected. Furthermore, we found that functionalisation of the oxindole molecular motors increases their quantum efficiency considerably in comparison to previous motors of their class.
Here, we describe a family of oxindole motors fitted with electron-withdrawing and -donating substituents at three different positions of the motor core (Scheme 1A). The R1 and R2 sites were selected as they are directly conjugated with the central olefinic axle of rotation, and therefore are expected to have major influence on the photochemical and thermal properties of the motors.43 The R3 site offers conjugation to the oxindolic amide and shows potential as a convenient anchoring point of the motor for integration into larger functional systems. The effect of using different upper halves on the rotational properties of oxindole motors is described in our original work,40 however substituent effects have not yet been investigated. We expect electron-withdrawing and -donating groups to influence the absorption wavelength of the oxindole motors, potentially red-shifting them further into the visible region of the electromagnetic spectrum.30,43 We chose to investigate CN and OMe groups as electron-withdrawing and -donating groups, respectively, as they have been shown to be tolerable functional groups in fluorene-based molecular motors.30,42
Scheme 1 A) Oxindole-based molecular motors 1–9 investigated in this study; (B) four-step rotation cycle of the motors. |
To this end, we developed motors 1–3 based on a 5-membered naphthalene upper half, with the substituents in conjugation with the central olefinic bond. The five-membered ketones with functionalisation in the 6-position were more synthetically viable than the six-membered ketones, making them more readily accessible which will facilitate utilisation of the resulting motors for various applications. Motors 4–9 were fitted with a six-membered ring naphthalene-derived upper half, as it is reported that oxindole motors with this core have thermal half-lives in the region of multiple days.40 The novel oxindole lower half provides an attractive handle for further functionalisation; we decided to focus our attention on substitution at the 5-position of the oxindole, due to its interaction with the central double bond through resonance, affording motors 4–6. Unlike our previously reported oxindole motors,40,41 the current design features a non-methylated amide group on the oxindole lower half, which can be further functionalised to generate N-arylated oxindole motors 7–9.
All of the new motors 1–9 follow a four-step rotation cycle typical of oxindole-based molecular motors, consisting of two endergonic photochemical E–Z isomerisation (PEZ) steps and two exergonic thermal helix inversion (THI) steps (Scheme 1B, vide infra).40,41
The calculated relative energy barriers for both of the THI steps in DMSO are presented in Table 1. Similarly to previously reported oxindole motors,40 motors 1–3 with a five-membered ring in the upper half have by trend lower barriers than motors 4–9, fitted with six-membered rings in the upper half. This difference arises from the smaller five-membered ring imposing less steric hindrance in the fjord region of the motor, lowering the energy barrier required for the upper and lower halves to slide past each other during the THI.15 There is no significant effect of substitution in the R1, R2, or R3 positions on the thermal barriers. Collectively, the THI barrier of the ZM → ZS transition is lower than that of the EM → ES transition because in the first case the upper half needs to slide over the carbonyl group of the oxindole lower half, which is less sterically demanding than the phenyl ring on the opposite side. This result is in agreement with previously reported barriers for oxindole motors.40,41 The computed thermochemistry suggests that motors 1–9 will follow the unidirectional rotation cycle as is typical for oxindole motors and other overcrowded alkene-based motors.15,40,41 The simulated UV-Vis spectra (see Table 1, ESI and Table S15†) for the stable states of motors 1–9 in all solvents (DMSO, CH2Cl2 and MeOH) exhibit broad bands with absorption maxima centred between 370–450 nm, extending further into the visible region (up to >600 nm in the case of ES-3). For the corresponding metastable states, the absorption maxima are red-shifted by around 30–50 nm, due to both a destabilisation of the HOMOs of the metastable states in comparison to the HOMOs of the stable states, and a stabilisation of the LUMOs of the metastable states in comparison to that of the stable states (Fig. 1 and ESI†). In general, motors with five-membered rings in their upper halves (1–3) have absorption maxima at longer wavelengths in comparison to motors with six-membered upper halves (4–9) – owing to the increased rigidity of the five-membered ring, which improves conjugation. Indeed, this is supported by motor 1 having a smaller HOMO–LUMO gap than motors 4 and 7 (see ESI†). Functionalisation of the motors either at the upper half or at the oxindole lower half with OMe or CN groups causes a substantial red-shift (up to 40 nm), in comparison to unsubstituted parent motors 1 and 4. N-Arylated motors 7–9 have similar absorption bands, showing almost no effect from functionalisation with either an electron-withdrawing or -donating moiety; presumably, this result is due to the ability of the N-aryl bond to rotate freely, which can disrupt any potential conjugation with the central double bond axle.45
Fig. 1 Optimised structures and Frontier orbitals of ES-1 and ZM-1. Calculated with DFT at the PBE0/def2-TZVP level with the SMD DMSO solvent model. |
Motor | Z M → ZS ΔG‡calc/kcal mol−1 | E M → ES ΔG‡calc/kcal mol−1 | E S calc. λmax/nm | Z M calc. λmax/nm |
---|---|---|---|---|
1 | 12.1 | 16.7 | 412 | 451 |
2 | 12.2 | 16.6 | 415 | 451 |
3 | 12.9 | 16.9 | 452 | 490 |
4 | 27.2 | 30.6 | 388 | 440 |
5 | 27.7 | 29.0 | 401 | 449 |
6 | 26.2 | 30.0 | 406 | 457 |
7 | 27.1 | 30.9 | 396 | 445 |
8 | 27.2 | 30.8 | 395 | 444 |
9 | 27.3 | 30.3 | 396 | 447 |
Solutions of the ES compounds in EtOAc (∼1 mM) were irradiated with 365 nm light until a photostationary state (PSS) was reached, to obtain the Z isomers of motors 1–9 (see ESI†). For motors 1–3, the ZS isomer was readily formed after irradiation and could be isolated by flash column chromatography (motor 1), or preparative HPLC (motor 3, see ESI†). Due to poor solubility of motor 2, bulk irradiation and isolation of the ZS isomer was not possible. As a result of the higher activation barriers for the THI step in motors 4–9, as predicted by our preliminary calculations, irradiation formed the ZM isomer. Subsequent heating of the samples in EtOAc to reflux for 2 h in the dark afforded the ZS isomers, which could be subsequently isolated by flash column chromatography (for motors 4 and 7) or preparative HPLC (for motors 5, 6, and 9). For motor 8, the ZS isomer could not be obtained in pure form due to degradation after the prolonged heating required for the THI step to occur.
Single crystals of CN substituted motors ES-3, ES-6 and ES-9 suitable for X-ray diffraction were grown via slow evaporation of MeOH into a saturated solution of the corresponding motor in CHCl3 (see Fig. 2 and ESI†). The structures obtained have C(O)–N and CC bond lengths typical for oxindole motor compounds.41 The X-ray structures were compared with DFT optimised structures (Table 2). A root mean squares deviation was performed to compare the X-ray structures with the DFT simulated structures, in all cases the value was under 0.4 Å. ES-3 has a lower value due to the rigidity of the five-membered ring in the upper half, which may also contribute to the increased conjugation and red-shift observed for motors 1–3. Conversely, ES-6 and ES-9 possess six-membered rings in their upper halves which can pucker, resulting in multiple possible conformers; this is where the deviation in the RMSD originates from (see ESI, Fig. S5†).
Fig. 2 ORTEP images (ellipsoid probability at 50%) of X-ray crystal structures of motors ES-3, ES-6 and ES-9. |
Motor | C(O)–N distance/Å | CC distance/Å | Dihedral anglea/° | RMSD/Å |
---|---|---|---|---|
Values of the computationally optimised structures are shown in brackets.a Dihedral = ABCD in Scheme 2. | ||||
E S-3 | 1.360 (1.381) | 1.360 (1.358) | 33.07 (35.24) | 0.0869 |
E S-6 | 1.368 (1.384) | 1.363 (1.360) | 53.91 (47.41) | 0.306 |
E S-9 | 1.403 (1.402) | 1.358 (1.360) | 47.60 (47.33) | 0.264 |
The calculated and experimental values for C(O)–N and CC bond lengths of all the motors are in good agreement. For ES-6, the dihedral angle in the X-ray structure is 5° larger than in the computed structure, which is possibly due to packing effects in the crystalline solid. It would be expected that the dihedral angle in solution would be more similar to its computationally simulated value and to the values observed for ES-9, as the two compounds have similar steric demand in the fjord region.
Upon irradiation of a sample of the stable E isomer of motor 4 (ES-4) with a 365 nm LED in DMSO at room temperature, a bathochromic shift occurs with a clear isosbestic point (Fig. 3A). We assign this observation to the formation of the metastable Z isomer, ZM-4. Subsequent heating of the sample to 60 °C forms the stable Z isomer, ZS-4, accompanied by a hypsochromic shift in the absorption maximum. Further irradiation of the sample induces a second bathochromic shift, signifying formation of the metastable E isomer, EM-4, and finally upon heating to 100 °C, a second hypsochromic shift indicates the formation of the stable E isomer (ES-4) once again, completing the 360° rotation of the motor. The same experiments were carried out for motors 5–9 indicating that all of the compounds act as unidirectional motors (see ESI, Fig. S32–S37†).
Due to the low thermal barriers for the THI conversion in oxindole motors with upper halves containing five-membered rings,40,41 the metastable states of motors 1–3 were not observable with UV-Vis while irradiating at room temperature. When irradiating the ES isomer with 365 nm light, we recorded a small bathochromic shift of ES1–3 upon irradiation. This observation indicates formation of the ZS isomer at the PSS. The ZS form of the motors is slightly red-shifted in comparison to the ES isomer, according to simulated absorption spectra (see ESI, Fig. S29 and S31†) and our previous studies.40,41 Irradiation of motor 2 in THF (λ = 365 nm) also showed a small bathochromic shift while reaching the PSS (see ESI, Fig. S30†).
Next, the photochemical and thermal isomerisation behaviour of motors 1–9 were investigated by 1H NMR spectroscopy (Fig. 3B and ESI, Fig. S14†). Upon irradiation of a sample of ES-4 in DMSO-d6 with 395 nm light at room temperature, a new set of signals appeared. A substantial shift of the protons of the methyl group (Ha) and of the allylic proton (Hb) was observed (see Fig. 3A for atom labelling), allowing identification of the newly formed metastable Z isomer, ZM-4, in the photochemical E–Z isomerisation (PEZ) step. The sample was irradiated until no further spectral changes were observed, yielding a PSS with a 52:48 ES-4:ZM-4 distribution. The sample was then heated to 70 °C, resulting in the disappearance of the peaks corresponding to the ZM-4 isomer and an appearance of a new set of peaks, indicating the formation of the stable Z isomer (ZS-4) following the exergonic thermal helix inversion (THI) step. The NMR sample was irradiated once again with 395 nm light and a fourth state was revealed, corresponding to formation of the metastable E isomer, EM-4, with nearly quantitative conversion of ZS-4 → EM-4 (PSS395 = 4:96, ZS-4:EM-4). Upon heating to 100 °C, the initial isomer ES-4 was reformed, signifying the second THI step of the rotation cycle and a full 360° unidirectional rotation. Similar rotation cycles were observed for motors 5–9 at irradiation wavelengths ranging from between 395–420 nm, depending on the absorption band of the motor (see ESI, Fig. S14–S19†).
Owing to the low activation barriers for the THI steps in motors 1–3, it was necessary to carry out low temperature NMR experiments at −90 °C in CD2Cl2 to observe the metastable states. Under constant irradiation of the ES isomer, the first new set of peaks that arise correspond to the ZM isomer. The calculated barrier for the ZM → ZS transition in motors 1–3 is ∼12 kcal mol−1, a barrier which is so low that even at −90 °C the ZM isomer was observed to undergo THI to form the ZS state (see ESI, Fig. S12 and S13†). This phenomenon has been previously reported in the case of oxindole motors with five-membered rings in their upper halves.40,41 Once the ZS isomer has been formed in the NMR sample, constant irradiation allows the second metastable state, EM, to arise. Consequently, in the case of motors 1 and 3, a four-component PSS is obtained. After heating the sample to −45 °C, both metastable isomers are converted back to their stable counterparts; this event includes the reformation of the initial ES state, hence a full 360° rotation has occurred. Due to poor solubility in CD2Cl2 and THF-d8 at low temperatures, NMR irradiation experiments were not possible for motor 2.
Additional NMR irradiation experiments were carried out in DMSO for motors 1–9 at wavelengths close to the end of their respective π → π* absorption bands, to assess motor operation at longer wavelengths. The PSS ratios at these wavelengths are presented in Table 3. For motors 1–3, 505 nm light was used, improving the PSS ratios for these motors in comparison to irradiation at 365 nm. Motors 4–6 were irradiated with 455 nm light, and 7–9 with 420 nm light. Although with lower PSS ratios than when irradiating near the absorption maximum (ca. 365 nm), motors 4–9 operate under visible light illumination.
Motor | PSS365 (ES:ZS) | PSS505 (ES:ZS) |
---|---|---|
1 | 75:25 | 59:41 |
2 | 64:36 | 61:49 |
3 | 69:31 | 44:56 |
Eyring analysis was performed to determine the activation parameters for the THI steps motors 1–9, and the data is compiled in Table 4. For motors 4–9, the rates of the THI steps were determined by following the decay in absorbance of the absorption band of the metastable state in toluene (λ = 400–450 nm, see ESI†). For motors 1 and 3, low temperature 1H NMR in d4-methanol was employed to follow the rate of conversion of the metastable states to their corresponding stable states (see ESI†). The rate of THI was followed at five temperatures in each case, after which the rate constants obtained for the decay at each temperature were used to calculate the activation parameters using the linearised Eyring equation (see ESI†). All experimentally measured barriers follow qualitatively the same trend as calculated by DFT. As anticipated from calculations and previous studies on oxindole motors,40,41 the EM → ES transition is the rate-determining step in the rotational cycle.
Motor | Z M → ZS ΔG‡/kcal mol−1 | E M → ES ΔG‡/kcal mol−1 |
---|---|---|
Barriers for motors 1 and 3 determined by low temperature NMR in d4-methanol. Barriers for motors 4–9 determined by UV-Vis spectroscopy in toluene.a ZM isomers could not be sufficiently populated at −90 °C to monitor conversion to the ZS state.b ZS could not be obtained in pure form due to degradation after prolonged heating required for the THI step to occur. | ||
1 | —a | 17 ± 1 |
3 | —a | 16 ± 1 |
4 | 23.5 ± 0.3 | 25.8 ± 0.5 |
5 | 23.3 ± 0.2 | 26.4 ± 0.2 |
6 | 23.2 ± 0.6 | 24.0 ± 0.5 |
7 | 23.6 ± 0.4 | 25.5 ± 0.7 |
8 | 23.9 ± 0.1 | —b |
9 | 23.9 ± 0.4 | 26.0 ± 0.1 |
Motors 4–9 follow a clear trend for both THI steps, with small fluctuations in the barriers between each compound (<2 kcal mol−1). The thermal half-lives of the barriers at 293.15 K equate to multiple hours (6–20 h) for the ZM → ZS transitions, and multiple days (13–64 d) for the EM → ES transitions. The single outlier is the barrier from EM-6 → ES-6, which has a slightly shorter half-life at 293.15 K of 27 h, which interestingly coincides with the larger dihedral angle found in the crystal structure of ES-6. Overall, this trend demonstrates that substitution of electron-withdrawing or -donating groups at the 5-position or installing aryl groups on the amide functionality of oxindole has little to no effect on the THI barriers for these compounds.
Motors 1 and 3 have considerably lower THI barriers than for motors 4–9 because of the decreased degree of steric demand in the fjord region of these motors. The experimental barriers for these motors for the EM → ES THI steps are around 17 kcal mol−1, a result that is in agreement with the calculated thermal barriers and that is also similar to the experimentally obtained barriers of structurally related oxindole motors.40,41 Calculated barriers for the ZM → ZS barriers are approximately 12 kcal mol−1; due to these low activation energies, experimental derivation of the barriers was challenging. Even at −90 °C, the ZM states could not be sufficiently populated to follow conversion to the corresponding stable ZS state. As the rate limiting step of the rotation cycle is indeed the EM → ES THI step, the half-lives of motors 1 and 3 are found to be on the scale of milliseconds at 293.15 K.
The quantum yields (QYs) of motors 1–9 were determined using the method of Stranius and Börjesson,49 following the evolution of both components of the photostationary distribution upon irradiation (λ = 365 nm) of a sample of known concentration in UV-Vis at room temperature. In the case of motors 1–3, the concentration of the metastable states at room temperature is negligible. Therefore the measured QY is approximated as a forwards ES → ZS transition and a backwards ZS → ES transition, neglecting the contribution of the metastable states.41 Due to their longer thermal half-lives, the forwards and backwards photoreactions for all states in the rotation cycle of motors 4–9 can be measured. The QYs of motors 1–9 are shown in Table 5, which are generally higher than previously reported oxindole motors.40,41 In all cases, the photoreactions of the ZS isomers are more efficient than for the ES isomers. It has to be noted that the introduction of a free amide functionality in motor 4 doubles the QY for the ES → ZM step (from 2.3%–6.7%) and increases six-fold for the ZS → EM step (from 2.1%–12.9%), in comparison to the previously reported parent motor – fitted with an N-Me group at the amide.40N-Arylated motors 7–9 do not possess much higher QYs for the ES → ZM step than previously reported structurally similar oxindole motors,40 however the values for the ZS → EM step increases up to nine-fold. Interestingly, the CN functionalised motors have higher QYs than their unsubstituted counterparts and OMe functionalised motors have lower QYs than their unsubstituted counterparts. Such trends were also found for fluorene-based molecular motors,42 and confirms the computational prediction that having electron withdrawing groups in conjugation with the central alkene bond increases the isomerisation quantum yields.50
Motor | Quantum yield, φ (%) | |||||
---|---|---|---|---|---|---|
E S → ZS | E S → ZM | Z M → ES | Z S → ES | Z S → EM | E M → ZS | |
1 | 6.7 | — | — | 16.9 | — | — |
2 | 10.1 | — | — | 14.9 | — | — |
3 | 10.8 | — | — | 22.5 | — | — |
4 | — | 6.7 | 1.6 | — | 12.9 | 3.1 |
5 | — | 5.3 | 1.8 | — | 11.4 | 1.6 |
6 | — | 7.3 | 1.7 | — | 18.2 | 3.4 |
7 | — | 3.9 | 1.2 | — | 17.8 | 1.4 |
8 | — | 3.2 | 1.0 | — | — | — |
9 | — | 3.2 | 1.4 | — | 16.1 | 0.9 |
Footnote |
† Electronic supplementary information (ESI) available. CCDC 2143239, 2143240 and 2143164. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/d2qo00129b |
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