Alaa A.-M. Abdel-Aziza,
Adel S. El-Azab
a,
Simone Brogi
b,
Rezk R. Ayyad
*c,
Hamad M. Alkahtani
a,
Hatem A. Abuelizz
a,
Ibrahim A. Al-Suwaidana and
Abdulrahman M. Al-Obaida
aDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P. O. Box 2457, Riyadh 11451, Saudi Arabia
bDepartment of Pharmacy, University of Pisa, Via Bonanno 6, 56126 Pisa, Italy
cDepartment of Pharmaceutical Chemistry, Faculty of Pharmacy, Al-AzharUniversity, Cairo, Egypt. E-mail: rezkayyad.222@Azhar.edu.eg
First published on 12th July 2024
Antitumor activity using 59 cancer cell lines and enzyme inhibitory activity of a newly synthesized pyrazoline-linked 4-methylsulfonylphenyl scaffold (compounds 18a–q) were measured and compared with those of standard drugs. Pyrazolines 18b, 18c, 18f, 18g, 18h, and 18n possessed significant antitumor activity, with a positive cytotoxic effect (PCE) of 22/59, 21/59, 21/59, 48/59, 51/59, and 20/59, respectively. The cancer cell lines HL60, MCF-7, and MDA-MB-231 were used to measure the IC50 values of derivatives 18c, 18g, and 18h via the MTT assay method, and the results were compared with those of reference drugs. Derivatives 18g and 18h showed potent and broad-spectrum antitumor activities against HL60 (IC50 of 10.43, 8.99 μM, respectively), MCF-7 (IC50 of 11.7 and 12.4 μM, respectively), and MDA-MB-231 (IC50 of 4.07 and 7.18 μM, respectively). Compound 18c exhibited strong antitumor activity against HL60 and MDA-MB-231 cell lines with IC50 values of 8.43 and 12.54 μM, respectively, and moderate antitumor activity against MCF-7 cell lines with an IC50 value of 16.20 μM. Compounds 18c, 18g, and 18h remarkably inhibited VEGFR2 kinase (IC50 = 0.218, 0.168, and 0.135 μM, respectively) compared with the reference drug sorafenib (IC50 = 0.041 μM). Compounds 18g and 18h effectively inhibited HER2 kinase (IC50 = 0.496 and 0.253 μM, respectively) compared with erlotinib (IC50 = 0.085 μM). Compound 18h inhibited EGFR kinase (IC50 = 0.574 μM) with a potency comparable with that of the reference drug erlotinib (IC50 = 0.105 μM). Pyrazolines 18c, 18f, and 18h arrested the S/G2 phase of the cell cycle in HL-60 cells. In addition, derivatives 18c, 18f, and 18h revealed lower Bcl-2 protein expression anti-apoptotic levels and higher Bax, caspase-3, and caspase-9 expression levels. Molecular docking studies of derivative 18h into the binding sites of EGFR, HER2, and VEGFR2 kinases explored the interaction mode of these pyrazoline derivatives and their structural requirements for antitumor activity.
In addition, inhibition of these receptor tyrosine kinases initiates apoptosis in leukemia and breast and lung cancers.36–44 Various VEGFR2, EGFR, and HER2 inhibitors are potent antitumor agents used to treat cancer.45–50 Erlotinib (I), imatinib (II), afatinib (III), sorafenib (IV), and lapatinib (V) are FDA-approved receptor tyrosine kinase inhibitors used for the treatment of various types of cancers (Fig. 1).45–50 Moreover, another aspect of some cancer cells is the overexpression of the COX-2 isozyme, and in particular, it was found to be overexpressed in lung, colon, prostate, hepatocellular, ovarian, gastric, and breast cancers, indicating that the COX-2 enzyme could represent a promising drug target for possible antitumor therapy.51,52 In some cases, this antitumor effect via COX-2 inhibition may proceed through apoptosis.53 Accordingly, cancer-associated selective COX-2 inhibitors such as celecoxib (VI) can be used for tumor prevention, and they have also been reported to exhibit activity against prostate tumors in various experimental models of cancer (Fig. 2).54,55
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Fig. 2 Reported antitumor pyrazole, benzenesulfonyl compounds (VI–XIV), and the designed pyrazole-linked benzenesulfonyl derivatives (18a–q). |
On the other hand, compounds incorporating pyrazole and pyrazoline scaffolds possess a variety of biological activities, such as anti-inflammatory, antioxidant, antibacterial, antiviral, and antitumoral activities, including those in lung, liver, colorectal, and breast.56–65 Moreover, pyrazoline scaffolds are fundamental for the inhibition of several biological targets, such as carbonic anhydrase, COX-2, EGFR, and HER2, indicating their valuable importance in cancer treatment.54–61,66–70 A wide range of compounds incorporating pyrazoles and reduced form pyrazolines have been reported as potent antitumor agents used to prevent cancer.61–70 Examples of these compounds are diarylpyrazolines (VII), triarylpyrazolines (VIII), crizotinib (IX), ibrutinib (X), axitinib (XI), and pazopanib (XII), which exhibit excellent anticancer and tyrosine kinase inhibition activities (Fig. 2).56,71–74 Meanwhile, compounds containing methylsulfonyphenyl fragments like arenesulfonylhydrazone (XIII) and vismodegib (XIV), have been identified as promising antitumor agents against lung, colon, and liver cancers (Fig. 2).33,75,76 The mechanism underlying some of these anticancer agents has been studied using COX-2, EGFR, and HER2 inhibition assays, as well as apoptosis induction testing.33,36–44,53
According to the aforementioned rationale, a series of pyrazoline derivatives (compounds 18a–q), incorporating a 4-methylsulfonylbenzene nucleus (Fig. 2), was synthesized. In vitro antitumor activities and the structure–activity relationship (SAR) were studied using 59 human cancer cell lines. The inhibitory activity of the most promising compounds against EGFR, HER2, and VEGFR2 kinases, in addition to the COX-2 enzyme, was evaluated. Furthermore, an apoptosis and cell cycle analysis of the most active compounds in the HL-60 cell line was performed. The relationship between Bcl-2 and Bax gene expression and caspase-3 and caspase-9 activation was studied. Molecular docking of target kinase inhibitors was performed to predict their mode of interaction in the binding pockets of EGFR, HER2, and VEGFR2 tyrosine kinases.
Compound no. | PCEa | Cancer cell line assaysb (10.0 μM in one dose, GI%) | MGc% |
---|---|---|---|
a PCE: positive cytotoxic effect; the ratio between the number of cell lines with percentage growth inhibition >10% and the total cell lines.b MGI%: mean growth inhibition percent.c MG%: mean growth percent. | |||
18a | 11/59 | Leukemia (HL-60(TB), 32%; K-562, 19%; MOLT-4, 32%; SR, 13%), non-small cell lung (A549/ATCC, 18%; EKVX, 11%; NCI-H226, 11%; NCI-H522, 18%), melanoma (MALME-3M, 11%; UACC-257, 14%), renal (UO-31, 12%) | 98.11 |
18b | 22/59 | Leukemia (HL-60(TB), 22%; K-562, 32%; MOLT-4, 17%; RPMI-8226, 11%), NSC lung (A549/ATCC, 13%; EKVX, 21%; HOP-62, 29%; NCI-H226, 15%; NCI-H522, 27%), colon (HCT-116, 26%; HT29, 13%), CNS (SNB-75, 13%), melanoma (UACC-62, 14%), ovarian (SK-OV-3, 26%), renal (CAKI-1, 18%; UO-31, 32%), prostate (PC-3, 22%), breast (MCF7, 13%; MDA-MB-231/ATCC, 11%; BT-549, 14%; T-47D, 31%; MDA-MB-468, 12%) | 92.03 |
18c | 21/59 | Leukemia (HL-60(TB), 46%; K-562, 33%; MOLT-4, 39%; RPMI-8226, 20%), NSC lung (A549/ATCC, 32%; EKVX, 15%; HOP-62, 26%; NCI-H522, 48%), colon (COLO 205, 22%; HT29, 19%), CNS (SNB-75, 14%; U251, 12%), melanoma (UACC-257, 32%), ovarian (OVCAR-8, 20%; SK-OV-3, 14%), renal (CAKI-1, 22%; UO-31, 20%), prostate (PC-3, 17%), breast (MCF7, 11%; BT-549, 14%; T-47D, 24%) | 90.58 |
18d | 18/59 | Leukemia (HL-60(TB), 57%; K-562, 32%; MOLT-4, 37%), non-small cell lung (A549/ATCC, 24%; EKVX, 16%; HOP-62, 29%; NCI-H322M, 14%; NCI-H522, 43%), colon (HT29, 14%), CNS (U-251, 17%), melanoma (UACC-257, 37%), ovarian (OVCAR-8, 15%; SK-OV-3, 13%), renal (CAKI-1, 14%; TK-10, 12%; UO-31, 27%), breast (BT-549, 15%; T-47D, 17%) | 93.02 |
18e | 15/59 | Leukemia (HL-60(TB), 48%; K-562, 29%; MOLT-4, 35%; RPMI-8226, 12%), non-small cell lung (EKVX, 12%; HOP-62, 14%; NCI-H226, 12%; NCI-H522, 15%), colon (HCT-116, 17%), CNS (SNB-75, 18%), renal (CAKI-1, 17%; UO-31, 22%), prostate (PC-3, 15%), (MCF7, 13%; T-47D, 17%) | 94.18 |
18f | 21/59 | Leukemia (HL-60(TB), 14%; MOLT-4, 30%; RPMI-8226, 18%), NSC lung (A549/ATCC, 16%; EKVX, 13%; HOP-62, 12%; NCI-H226, 17%; NCI-H522, 37%), colon (HCT-116, 20%; HT29, 12%), CNS (SNB-75, 20%; U251, 11%), melanoma (SK-MEL-2, 11%; UACC-257, 26%; UACC-62, 12%), renal (CAKI-1, 16%; UO-31, 24%), prostate (PC-3, 28%), breast (MCF7, 11%; T-47D, 16%; MDA-MB-468, 15%) | 93.80 |
18g | 48/59 | Leukemia (HL-60(TB), 66%; K-562, 80%; MOLT-4, 56%; SR, 50%), NSC lung (A549/ATCC, 43%; EKVX, 25%; HOP-62, 26%; NCI-H23, 12%; NCI-H322M, 12%; NCI-H460, 17%; NCI-H522, 73%), colon (COLO 205, 33%; HCT-116, 37%; HCT-15, 45%; HT29, 15%; KM12, 37%; SW-620, 25%), CNS (SF-268, 11%; SF-295, 30%; SNB-19, 13%; SNB-75, 30%; U251, 23%), melanoma (LOX IMVI, 16%; MALME-3M, 14%; M14, 32%; MDA-MB-435, 76%; SK-MEL-2, 33%; SK-MEL-28, 23%; SK-MEL-5, 38%; UACC-257, 40%; UACC-62, 36%), ovarian (IGROV1, 23%; OVCAR-3, 24%; OVCAR-4, 22%; NCI/ADR-RES, 38%; SK-OV-3, 26%), renal (786-0, 22%; A498, 16%; ACHN, 12%; CAKI-1, 43%; UO-31, 26%), prostate (PC-3, 33%), breast (MCF7, 52%; MDA-MB-231/ATCC, 14%; HS 578T, 15%; BT-549, 27%; T-47D, 32%; MDA-MB-468, 45%) | 72.98 |
18h | 51/59 | Leukemia (CCRF-CEM, 41%; HL-60(TB), 73%; K-562, 55%; MOLT-4, 62%; RPMI-8226, 16%; SR, 30%), NSC lung (A549/ATCC, 45%; EKVX, 41%; HOP-62, 47%; NCI-H226, 15%; NCI-H23, 12%; NCI-H322M, 48%; NCI-H460, 54%; NCI-H522, 55%), colon (COLO 205, 20%; HCT-116, 35%; HCT-15, 56%; HT29, 20%; KM12, 21%), CNS (SF-268, 39%; SF-295, 23%; SNB-19, 17%; U251, 48%), melanoma (LOX IMVI, 34%; MALME-3M, 21%; M14, 29%; SK-MEL-2, 28%; SK-MEL-28, 11%; SK-MEL-5, 38%; UACC-257, 39%; UACC-62, 12%), ovarian (IGROV1, 28%; OVCAR-3, 35%; OVCAR-4, 22%; OVCAR-8, 41%; NCI/ADR-RES, 22%; SK-OV-3, 25%), renal (786-0, 33%; ACHN, 25%; CAKI-1, 33%; RXF 393, 29%; SN12C, 17%; TK-10, 25%; UO-31, 47%), prostate (PC-3, 21%; DU-145, 19%), breast (MCF7, 22%; MDA-MB-231/ATCC, 32%; BT-549, 19%; T-47D, 30%; MDA-MB-468, 17%) | 72.20 |
18i | 12/59 | Leukemia (HL-60(TB), 46%; MOLT-4, 28%), non-small cell lung (A549/ATCC, 35%; EKVX, 12%; HOP-62, 20%; NCI-H226, 13%; NCI-H522, 29%), colon (HT-29, 17%), melanoma (UACC-257, 36%), renal (CAKI-1, 23%; UO-31, 28%), breast (T-47D, 17%) | 96.46 |
18j | 10/59 | Leukemia (HL-60(TB), 35%; K-562, 13%; MOLT-4, 26%), non-small cell lung (A549/ATCC, 24%; EKVX, 12%; NCI-H226, 11%; NCI-H522, 14%), CNS (SNB-75, 12%), melanoma (UACC-257, 14%), breast (T-47D, 16%) | 97.16 |
18k | 12/59 | Leukemia (HL-60(TB), 18%; MOLT-4, 27%; RPMI-8226, 11%), non-small cell lung (A549/ATCC, 13%; NCI-H226, 14%; NCI-H522, 35%), colon (HT-29, 20%), CNS (SNB-75, 11%), melanoma (K-MEL-5, 14%), renal (UO-31, 15%), prostate (PC-3, 21%), breast (MDA-MB-468, 16%) | 97.49 |
18l | 14/59 | Leukemia (HL-60(TB), 47%; K-562, 18%; MOLT-4, 33%), non-small cell lung (A549/ATCC, 40%; HOP-62, 11%; NCI-H522, 34%), colon (HT-29, 19%), CNS (SNB-75, 11%), melanoma (UACC-257, 45%), renal (CAKI-1, 14%; UO-31, 16%), breast (MCF7, 11%; BT-549, 13%; T-47D, 11%) | 95.78 |
18m | 18/59 | Leukemia (HL-60(TB), 63%; K-562, 40%; MOLT-4, 48%), NSC lung (A549/ATCC, 20%; HOP-62, 17%; NCI-H226, 11%; NCI-H522, 13%), colon (COLO 205, 19%; HCT-116, 18%; HCT-15, 14%), CNS (SNB-75, 12%), ovarian (SK-OV-3, 16%), renal (A498, 14%; UO-31, 34%), prostate (PC-3, 15%), breast (MCF7, 16%; BT-549, 14%; T-47D, 22%) | 91.96 |
18n | 20/59 | Leukemia (HL-60(TB), 55%; K-562, 26%; MOLT-4, 38%), NSC lung (EKVX, 28%; HOP-62, 20%; NCI-H226, 14%; NCI-H522, 20%), colon (HCT-116, 18%; KM12, 12%), CNS (SNB-75, 15%), melanoma (SK-MEL-2, 18%; SK-MEL-5, 21%), ovarian (OVCAR-4, 12%), renal (CAKI-1, 15%; UO-31, 24%), prostate (PC-3, 15%), breast (MCF7, 65%; MDA-MB-231/ATCC, 12%; T-47D, 14%; MDA-MB-468, 36%) | 93.24 |
18o | 15/59 | Leukemia (HL-60(TB), 51%; K-562, 32%; MOLT-4, 40%; SR, 11%), NSC lung (A549/ATCC, 31%; HOP-62, 18%; NCI-H522, 43%), colon (HT29, 17%), CNS (SNB-75, 15%), melanoma (SK-MEL-5, 12%; UACC-257, 38%), renal (CAKI-1, 12%; UO-31, 19%), breast (BT-549, 11%; T-47D, 18%) | 94.17 |
18p | 11/59 | Leukemia (HL-60(TB), 31%; K-562, 23%), NSC lung (HOP-62, 26%; NCI-H226, 15%; NCI-H522, 13%), colon (HCT-116, 17%), CNS (SF-268, 11%), ovarian (SK-OV-3, 16%), renal (UO-31, 25%), breast (T-47D, 25%; MDA-MB-468, 13%) | 97.33 |
18q | 6/59 | CNS (SNB-75, 13%), renal (A498, 13%; CAKI-1, 13%; UO-31, 24%), breast (MCF7, 12%; MDA-MB-468, 12%) | 97.51 |
Imatinib | 20/59 | Leukemia (MOLT-4, 18%; PRMI-8226, 12.6%; SR, 14.6%), NSC lung (EKVX, 15.7%; NCI-H226, 10.6%; NCI-H23, 17.1%), colon (HCT-116, 18.6%; HCT-15, 11.5%; HT-29, 47.1%), CNS (SF-295, 15.1%; SF-539, 24.5%; U251, 10.6%), melanoma (LOX IMVI, 11.6%; SK-MEL-5, 22.3%), renal (A-498, 13.7%), prostate (PC-3, 10.6%; DU-145, 14.4%), breast (MDA-MB-231/ATCC, 11.2%; T-47D, 18.6%; MDA-MB-468, 29.1%) | 92.62% |
The broad-spectrum and selectivity of compounds 18a–q (Table 1) against the 59 cell lines showed that compounds 18b, 18c, 18d, 18e, 18f, 18g, 18h, 18m, 18n, and 18o had significant GI (>10–80%) against most of the cancer cell lines tested [leukemia, non-small cell lung cancer (NSCLC), melanoma, colon, CNS, ovarian, renal, prostate, and breast cancer] compared with imatinib (GI% < 10–47). Compounds 18b, 18c, 18d, 18f, 18g, 18h, 18m, and 18n showed significant antitumor activity against leukemia (GI% = 11–80), NSCLC (GI% = 11–73), colon cancer (GI% = 12–56), CNS cancer (GI% = 11–48), melanoma (GI% = 11–76), ovarian cancer (GI% = 12–41), renal cancer (GI% = 12–47), prostate cancer (GI% = 15–33), and breast cancer (GI% = 11–65). In contrast, the antitumor activity of imatinib was moderate against leukemia (GI% = 13–18), NSCLC (GI% = 11–17), colon cancer (GI% = 12–47), CNS cancer (GI% = 11–25), melanoma (GI% = 12–22), ovarian cancer (GI% < 10), renal cancer (GI% < 10–14), prostate cancer (GI% = 11–14), and breast cancer (GI% = 11–29).
Compd no. | Mean GI% | In vitro cytotoxicitya IC50 (μM) | Mean tumor selectivity indexb | ||||
---|---|---|---|---|---|---|---|
Leukemia | Breast cancer | HL-60 | MCF-7 | MDA-MB-231 | WI38 | ||
a IC50 value is the concentration of compound that inhibits 50% of the cancer cell growth after 48 h of drug exposure, as obtained from the MTT assay. Each value was shown as mean ± SD of three experiments.b Mean GI% and tumor selectivity index (WI38/HL60, MCF7, and MDA-MB-231). | |||||||
18c | 35 | 16 | 8.43 ± 1.7 | 16.2 ± 0.72 | 12.54 ± 0.56 | 34.81 ± 1.54 | 3.02 |
18g | 63 | 31 | 10.43 ± 0.68 | 11.7 ± 0.96 | 4.07 ± 0.18 | 26.19 ± 1.16 | 3.73 |
18h | 46 | 24 | 8.99 ± 0.4 | 12.48 ± 0.55 | 7.18 ± 0.32 | 40.9 ± 1.81 | 4.51 |
Afatinib | — | — | 6.50 ± 0.77 | 7.91 ± 0.66 | 8.05 ± 0.72 | 44.01 ± 1.9 | 5.93 |
Staurosporine | — | — | 5.191 ± 0.23 | 3.841 ± 0.17 | 5.814 ± 0.26 | 20.23 ± 0.9 | 4.21 |
DOX | — | — | 6.01 ± 0.2 | 4.77 ± 0.4 | 5.10 ± 0.31 | 7.12 ± 0.7 | 1.36 |
Compound no. | IC50a (μM) | |||
---|---|---|---|---|
COX-2 inhibition | EGFR inhibition | HER2 inhibition | VEGFR2 inhibition | |
a IC50 value is the compound concentration required to produce 50% inhibition. Each value was shown as mean ± SD of three experiments. | ||||
18c | 126.54 ± 8.23 | 1.120 ± 0.037 | 1.427 ± 0.047 | 0.218 ± 0.005 |
18g | 94.01 ± 4.41 | 1.015 ± 0.034 | 0.496 ± 0.016 | 0.168 ± 0.003 |
18h | 19.32 ± 0.72 | 0.574 ± 0.019 | 0.253 ± 0.008 | 0.135 ± 0.009 |
Celecoxib | 2.80 ± 0.079 | — | — | — |
Erlotinib | — | 0.105 ± 0.035 | 0.085 ± 0.003 | — |
Sorafenib | — | — | — | 0.041 ± 0.002 |
Additionally, these compounds exhibited inhibitory effects against COX-2 with IC50 in the 19.32–126.54 μM range. Compounds 18g and 18h showed the highest and most potent inhibitory activity against HER2 (IC50 = 0.496 and 0.253 μM, respectively) and VEGFR2 (IC50 = 0.168 and 0.135 μM, respectively) compared with erlotinib (HER2-IC50 = 0.085 μM) and sorafenib (VEGFR2-IC50 = 0.041 μM). The derivative 18h showed the highest EGFR inhibitory effect against EGFR (IC50 = 0.574 μM) compared to erlotinib (IC50 = 0.105 μM). Compound 18c was the least active against EGFR and HER2 (IC50 = 1.12 and 1.427 μM, respectively), whereas it was more effective against VEGFR2 (IC50 = 0.218 μM). On the other hand, compounds 18c, 18g, and 18h showed ineffective inhibitory activity against the COX-2 enzyme (IC50 = 126.54, 94.01, and 19.32 μM, respectively) compared with celecoxib (IC50 = 2.80 μM). It is clear that the compound with a 4-tolyl moiety fragment (compound 18g) and the derivative with a 2-hydroxyphenyl moiety (compound 18h) are more potent than the corresponding compound with a 4-fluorophenyl moiety (compound 18c).
Gene expression (fold change) | ||||
---|---|---|---|---|
Compound no. | Casp3 | Casp9 | Bax | Bcl2 |
18c | 7.453 | 5.158 | 4.413 | 0.184 |
18g | 3.945 | 4.386 | 3.054 | 0.252 |
18h | 5.559 | 2.799 | 2.154 | 0.423 |
Staurosporine | 7.594 | 5.456 | 6.104 | 0.249 |
Control | 1 | 1 | 1 | 1 |
![]() | ||
Fig. 5 Binding mode of compound 18h (grey sticks) within hEGFR (green cartoon PDB ID 1M17). In panel (A), the R-enantiomer is reported, and in panel (B), the S-enantiomer of the compound is reported. Residues in the binding sites are represented by thin sticks, and hydrogen bonds are shown as grey dotted lines. Images were generated using Maestro (Schrödinger, LLC, New York, 2020). |
This enantiomer established H-bonds with the backbone of Leu694 and the side chains of Thr766 and Thr830. In addition, hydrophobic contacts (van der Waals interactions) were observed with residues Phe699, Val702, and Leu820. This binding mode accounted for a docking score of −7.983 kcal mol−1. The S-enantiomer of compound 18h (S-18h) maintained the hydrophobic interactions found for compound R-18h, whereas the H-bond with the backbone of the reside Leu694 was not detected. However, the hydroxyl group was able to target the backbone of Arg817 by an H-bond, and another H-bond was observed with the side chain of Thr766 (Fig. 5B). The contact with the residues Thr830 found for R-18h was completely lost considering the molecule S-18h. This binding mode with only one interaction of difference in terms of the number of contacts compared with R-18h accounted for a docking score slightly different with respect to that found for R-18h (−7.772 kcal mol−1), hypothesizing that there is no present a significant stereoselectivity in terms of interaction with the selected target and the relevant inhibitory activity could be attributed to both enantiomers.
The docking output for both enantiomers of compound 18h, considering the drug target hHER2, is shown in Fig. 6. R-18h (Fig. 6A) established two H-bonds with the side chain of Lys753 and the backbone of Phe731. This latter residue was also targeted by a cation–π stacking.
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Fig. 6 Binding mode of compound 18h (grey sticks) within hHER2 (orange cartoon PDB ID 3RCD). In panel (A), the R-enantiomer is reported, and in panel (B), the S-enantiomer of the compound is reported. Residues in the binding sites are represented by thin sticks, hydrogen bonds are shown as black dotted lines, and the cation–π interaction and the π–π interaction as green and cyan dotted lines, respectively. Images were generated using Maestro (Schrödinger, LLC, New York, 2020). |
Additional hydrophobic contacts with residues Leu726, Val734, Leu852, and Phe1004 were also detected. The mentioned hydrophobic interactions and the cation–π stacking with Lys753 were also found when we considered S-18h (Fig. 6B). For this enantiomer, we observed the lack of two contacts found for R-18h and the replacement of those contacts with two other different interactions, i.e., Asn830 (H-bond) and Phe1004 (π–π stacking). There was no difference between the two enantiomers in terms of the number of contacts established within the selected binding site, and we observed only a slight variation in the docking scores (R-18h = −7.539 kcal mol−1; S-18h = −7.715 kcal mol−1), indicating a similar contribution to the activity of the racemic mixture from the two enantiomers.
Finally, the docking output for the drug target hVEGFR2 is shown in Fig. 7. Panel A illustrates the docking output for R-18h. The considered molecule established two π–π interactions with Phe918 and Phe1047 and H-bonds with the residue Arg1051. Additional hydrophobic contacts with Leu840, Gly922, and Leu1035 were detected. Considering S-18h, we found the same number of contacts described for compound R-18h with the same targeted residues, although the π–π interaction with Phe918, found for R-18h, was replaced by an additional π–π stacking with Phe1047. Due to the similar targeted residues and binding modes between R-18h and S-18h, we found very close docking scores (R-18h = −7.651 kcal mol−1; S-18h = −7.608 kcal mol−1), probably reflecting the lack of stereoselective interaction of 18h with the selected target. In summary, we can speculate about the importance of the contribution of both enantiomers in the significant inhibitory capacity of compound 18h against the selected proteins.
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Fig. 7 Binding mode of compound 18h (grey sticks) within hVEGFR2 (magenta cartoon PDB ID 4ASD). In panel (A), the R-enantiomer is reported, and in panel (B), the S-enantiomer of the compound is reported. Residues in the binding sites are represented by thin sticks, hydrogen bonds are shown as black dotted lines, and the π–π interaction as cyan dotted lines. Images were generated using Maestro (Schrödinger, LLC, New York, 2020). |
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra03902e |
This journal is © The Royal Society of Chemistry 2024 |