Issue 16, 2021

Antibody-powered DNA switches to initiate the hybridization chain reaction for the amplified fluorescence immunoassay

Abstract

Designing antibody-powered DNA nanodevice switches is crucial and fascinating to perform a variety of functions in response to specific antibodies as regulatory inputs, achieving highly sensitive detection by integration with simple amplified methods. In this work, we report a unique DNA-based conformational switch, powered by a targeted anti-digoxin mouse monoclonal antibody (anti-Dig) as a model, to rationally initiate the hybridization chain reaction (HCR) for enzyme-free signal amplification. As a proof-of-concept, both a fluorophore Cy3-labeled reporter hairpin (RH) in the 3′ terminus and a single-stranded helper DNA (HS) were individually hybridized with a recognition single-stranded DNA (RS) modified with Dig hapten, while the unpaired loop of RH was hybridized with the exposed 3′-toehold of HS, isothermally self-assembling an intermediate metastable DNA structure. The introduction of target anti-Dig drove the concurrent conjugation with two tethered Dig haptens, powering the directional switch of this DNA structure into a stable conformation. In this case, the unlocked 3′-stem of RH was implemented to unfold the 5′-stem of the BHQ-2-labeled quench hairpin (QH), rationally initiating the HCR between them by the overlapping complementary hybridization. As a result, numerous pairs of Cy3 and BHQ-2 in the formed long double helix were located in spatial proximity. In response to this, the significant quenching of the fluorescence intensity of Cy3 by BHQ-2 was dependent on the variable concentration of anti-Dig, achieving a highly sensitive quantification down to the picomolar level based on a simplified protocol integrated with enzyme-free amplification.

Graphical abstract: Antibody-powered DNA switches to initiate the hybridization chain reaction for the amplified fluorescence immunoassay

Supplementary files

Article information

Article type
Paper
Submitted
14 ៦ 2021
Accepted
09 ៧ 2021
First published
12 ៧ 2021

Analyst, 2021,146, 5067-5073

Antibody-powered DNA switches to initiate the hybridization chain reaction for the amplified fluorescence immunoassay

J. He, Z. Chen, H. Deng, R. Yuan and W. Xu, Analyst, 2021, 146, 5067 DOI: 10.1039/D1AN01045J

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