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1-((2,4-Dichlorophenethyl)Amino)-3-Phenoxypropan-2-ol Kills Pseudomonas aeruginosa through Extensive Membrane Damage

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Front. Microbiol., 2018, 9
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Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

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PLoS Genet, 2015, 11, e1005635
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Transcriptome analysis of hopanoid deficient mutant of Rhodopseuodomonas palustris TIE-1

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Microbiological Research, 2019, 218, 108
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Dynamics of the Saccharomyces cerevisiae Transcriptome during Bread Dough Fermentation

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Appl Environ Microbiol, 2013, 79, 7325
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PheNetic: network-based interpretation of molecular profiling data

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Nucleic Acids Res, 2015, 43, W244
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Integrative study ofArabidopsis thalianametabolomic and transcriptomic data with the interactive MarVis-Graph software

Manuel Landesfeind, Alexander Kaever, Kirstin Feussner, Corinna Thurow, Christiane Gatz, Ivo Feussner and Peter Meinicke

PeerJ, 2014, 2, e239
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Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

Razgar Seyed Rahmani, Tao Shi, Dongzhi Zhang, Xiaoping Gou, Jing Yi, Giles Miclotte, Kathleen Marchal and Jia Li

BMC Genomics, 2021, 22
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Semirings for probabilistic and neuro-symbolic logic programming

Vincent Derkinderen, Robin Manhaeve, Pedro Zuidberg Dos Martires and Luc De Raedt

International Journal of Approximate Reasoning, 2024, 171, 109130
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The Effect of Iodine-Containing Nano-Micelles, FS-1, on Antibiotic Resistance, Gene Expression and Epigenetic Modifications in the Genome of Multidrug Resistant MRSA Strain Staphylococcus aureus ATCC BAA-39

Oleg N. Reva, Ilya S. Korotetskiy, Monique Joubert, Sergey V. Shilov, Ardak B. Jumagaziyeva, Natalya A. Suldina and Alexandr I. Ilin

Front. Microbiol., 2020, 11
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Network-Based Analysis to Identify Drivers of Metastatic Prostate Cancer Using GoNetic

Louise de Schaetzen van Brienen, Giles Miclotte, Maarten Larmuseau, Jimmy Van den Eynden and Kathleen Marchal

Cancers, 2021, 13, 5291
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COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia: Table 1.

Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides and Kristof Engelen

Nucl. Acids Res., 2014, 42, D649
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Comparison of Transcriptional Responses and Metabolic Alterations in Three Multidrug-Resistant Model Microorganisms, Staphylococcus aureus ATCC BAA-39, Escherichia coli ATCC BAA-196, and Acinetobacter baumannii ATCC BAA-1790, on Exposure to Iodine-Containing Nano-micelle Drug FS-1

Ilya S. Korotetskiy, Sergey V. Shilov, Tatyana V. Kuznetsova, Aleksandr I. Ilin, Monique Joubert, Setshaba Taukobong, Oleg N. Reva and Pieter C. Dorrestein

mSystems, 2021, 6
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Probabilistic (logic) programming concepts

Luc De Raedt and Angelika Kimmig

Mach Learn, 2015, 100, 5
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Insufficient levels of the nrdAB‐encoded ribonucleotide reductase underlie the severe growth defect of the Δhda E. coli strain

Vignesh M. P. Babu, Mark Itsko, Jamie C. Baxter, Roel M. Schaaper and Mark D. Sutton

Molecular Microbiology, 2017, 104, 377
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Network-Based Analysis of eQTL Data to Prioritize Driver Mutations

Dries De Maeyer, Bram Weytjens, Luc De Raedt and Kathleen Marchal

Genome Biol Evol, 2016, 8, 481
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Augmenting subnetwork inference with information extracted from the scientific literature

Sid Kiblawi, Deborah Chasman, Amanda Henning, Eunju Park, Hoifung Poon, Michael Gould, Paul Ahlquist, Mark Craven and Andrey Rzhetsky

PLoS Comput Biol, 2019, 15, e1006758
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Role of spt23 in Saccharomyces cerevisiae thermal tolerance

Zhilong Lu, Yanling Wu, Ying Chen, Xiaoling Chen, Renzhi Wu, Qi Lu, Dong Chen and Ribo Huang

Appl Microbiol Biotechnol, 2022, 106, 3691
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The Crabtree Effect Shapes the Saccharomyces cerevisiae Lag Phase during the Switch between Different Carbon Sources

Gemma Perez-Samper, Bram Cerulus, Abbas Jariani, Lieselotte Vermeersch, Nuria Barrajón Simancas, Markus M. M. Bisschops, Joost van den Brink, Daniel Solis-Escalante, Brigida Gallone, Dries De Maeyer, Elise van Bael, Tom Wenseleers, Jan Michiels, Kathleen Marchal, Pascale Daran-Lapujade, Kevin J. Verstrepen and Fred M. Winston

mBio, 2018, 9
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IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations

Camilo Andres Perez-Romero, Bram Weytjens, Dries Decap, Toon Swings, Jan Michiels, Dries De Maeyer and Kathleen Marchal

Nucleic Acids Research, 2019, 47, W151
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