Luz
Diego
a,
Diego V.
Moreno
b,
David
Arias-Olivares
c and
Rafael
Islas
*d
aDoctorado en Fisicoquímica Molecular, Facultad de Ciencias Exactas, Universidad Andres Bello, Av. República 275, Santiago, 8370146, Chile
bLaboratorio de Química Computacional, Programa de Química, Universidad de Ciencias Aplicadas y Ambientales (U.D.C.A.), Calle 222 #55-37, Bogotá 111166, Colombia
cCenter of Applied Nanoscience (CANS), Facultad de Ciencias Exactas, Universidad Andres Bello, Av. República 275, Santiago 8370146, Chile
dDepartamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello, Av. República 275, Santiago, 8370146, Chile. E-mail: rafael.islas@unab.cl
First published on 21st October 2025
This study examines the SiE2M32+ and GeE2M32+ clusters (E = P, As, Sb; M = Ca, Sr, Ba) stabilized by 18-valence-electron (18ve). Twelve global minima exhibiting C2v symmetry were identified: six featuring a central silicon atom and six with a central germanium atom. All structures satisfy the geometric criteria for planar pentacoordination as defined by the IUPAC coordination concept. BOMD simulations at 298 and 600 K confirmed their kinetic stability. Using the central atom (Si or Ge) and the E2M32+ ring as fragments, the EDA–NOCV analysis reveals that the orbital interaction term (ΔEorb) constitutes the major contribution to stabilization. This is characterized by a dominant s(Si/Ge)–π(ring) coupling, accompanied by π reorganization, with no evidence of an independent Si/Ge–M σ bond. However, IQA analysis reveals that in SiP2M32+, all three Si–M interactions are repulsive, resulting in a planar dicoordinate silicon center. In SiAs2M32+ and GeP2M32+, electrostatic repulsion involving one metal atom (M) prevents the formation of true pentacoordination, resulting instead in planar tetracoordinate centers. Only GeAs2M32+ exhibits a genuine planar pentacoordinate germanium center, constituting the first confirmed example of this species stabilized by this specific electron count.
For silicon and germanium atoms, which are isoelectronic analogs of carbon, both theoretical and experimental studies have demonstrated the feasibility of planar tetracoordination. The first experimental evidence was obtained from gas-phase photoelectron spectroscopy of MAl4− (M = Si, Ge), reported by Wang et al.22 Subsequently, several ptSi and ptGe species have been synthesized in rigid or macrocyclic ligands.23–25 From a theoretical standpoint, numerous studies have reported structures featuring a ptSi or ptGe center identified either as global or local minima, stabilized under different criteria. These include systems with halogenated transition-metal ligands XM4Cl4 (X = Si, Ge; M = Ni, Pd, Pt);26 structures with 18ve as SiIn42−;27 pentaatomic structures with 14ve in Li3SiAs2−, HSiY3 (Y = Al, Ga), Ca3SiAl−, Mg4Si2−, C2LiSi and Si3Y2 (Y = Li, Na, K);28 planar triangular arrangements with D3h symmetry in X3Cu3+, X3Li3+ (X = Si, Ge) and X3M3 (X = C–Pb; M = Li–Cs) formed by three ptX units;29,30 fan-like structures with C2v symmetry in C2Si2Xq, XB2Be2 and XB2Bi2 (X = C, Si, Ge, Sn, Pb; q = +1, 0, −1);31–33 and, most recently, a ptSi in a rhombic arrangement in Si3Cu3− with 16ve.34 Despite progress in ptSi and ptGe, planar pentacoordinate silicon (ppSi) and germanium (ppGe) remain far less explored. Achieving planar pentacoordination is more challenging because the interactions between the central Si or Ge and neighboring metals are often weak or even repulsive, making it difficult to stabilize the system.
In 2020, the first ppSi and ppGe species were identified within the XMg4Y− (X = Si, Ge; Y = In, Tl) and SiMg3In2 systems.35 These designs were based on the “electronic localization” approach, which consists of replacing one or two peripheral atoms in XMg52− with more electronegative elements, to reduce electronic repulsion and strengthen X–Y bonding, thereby stabilizing the planar pentacoordinate center. In addition, several planar hypercoordinate configurations of silicon based on SiO3 units surrounded by alkali metals in SiO3M−, SiO3M2 and SiO3M3+ (M = Li, Na) have been described, where EDA–NOCV bonding analysis reveals that the high stability and planarity in these systems is due to dative interactions (M ← SiO3) mediated by the metal s, p and d vacant orbitals, and Si–O multiple bonds.36
Building on this context, the 18ve rule is used here as a design guideline for achieving planar pentacoordination. This rule has been widely applied to predict numerous planar pentacoordinate carbon (ppC) species.37–44 For instance, the CO2Li3+ cation has been reported to exhibit a global minimum with a ppC, when evaluated under the IUPAC coordination-number concept, along with interatomic distances and Wiberg bond indices.45 However, a subsequent IQA analysis showed electrostatic repulsion between C and Li, indicating a planar dicoordinate carbon.46 The same study extended the scope to CE2M3+ systems (E = S–Te; M = Li–Cs), identifying five global minima with a ppC, all consistent with 18ve. Following this principle, we extend the design by replacing carbon with Si and Ge, substituting chalcogens with pnictogens (E = P, As, Sb), and employing alkaline-earth metals (M = Be–Ba, Fig. 1). Systems containing Be or Mg exhibited imaginary vibrational modes and therefore did not correspond to real minima, while Ca, Sr, and Ba presented stable minima (see Tables S1 and S2). Unlike previous designs based on Mg and alkali metals, the heavier alkaline earth metals (Ca, Sr, Ba) offer a more favorable platform for 18ve-guided design with silicon or germanium centers. While all global minima satisfy the geometric criterion (IUPAC), only GeAs2M32+ fulfills the energetic IQA criterion for genuine pentacoordination.
The dynamical behavior of the system was explored through Born–Oppenheimer molecular dynamics (BOMD)59 simulations at 298 K and 600 K, carried out at the PBE0-D3/SDDAll level for 20 ps with a 1 fs time step. Since this program implements only a velocity-rescaling thermostat via the ADMP method,60 the simulations were run using the FULLSCF option to ensure equivalence with standard BOMD. All calculations were performed using the Gaussian 16.61
The electron distribution was evaluated using Wiberg bond indices (WBI)62 and natural population analysis (NPA),63 both implemented in NBO 7.0.64 For a more detailed analysis of the nature of the bonds, the adaptive natural density partitioning (AdNDP)65 method, implemented in Multiwfn, was used.66 These calculations were performed at the PBE0-D3/aug-cc-pVTZ level, and the graphical representations were generated using VMD 1.9.3.67,68
Interatomic interaction energies (Vint) were decomposed using the interaction quantum atoms (IQA) method.69 This approach partitions Vint between atomic basins into a Coulomb term VC (encompassing all classical electrostatic components) and an exchange–correlation term VXC (capturing purely quantum contributions, including Pauli repulsion and electron correlation), which are commonly associated with ionic and covalent bonding, respectively. By convention, Vint < 0 denotes attraction and Vint > 0 denotes repulsion. All IQA calculations were performed in AIMAll70 using wavefunctions generated at the PBE0-D3/aug-cc-pVTZ level.
Energy decomposition analysis (EDA) combined with ETS–NOCV was performed within the framework of relativistic density functional theory using the Amsterdam Density Functional (ADF 2024-103) code.71 The zeroth-order regular approximation (ZORA)72 was applied to account for scalar relativistic effects. Calculations were carried out using the PBE0-D3/TZVP73 level. All systems were fragmented following the same scheme: one fragment corresponds to the central atom, and the second fragment corresponds to the surrounding “ring”. The interaction energy was decomposed according to the Morokuma–Ziegler scheme into the following components:
| ΔEint = ΔEPauli + ΔEorb + ΔEelstat + ΔEdisp |
Single-point energy calculations were performed on these structures at the CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ level of theory, and their values are shown in Fig. S13. Although the energy corrections obtained with CCSD(T)//MP2 are slightly larger than those calculated with CCSD(T)//PBE0-D3, both theoretical levels agree that the global minimum corresponds to a structure with a Si or Ge center in a planar pentacoordinate environment. The diagnostic T1 values for all global minima are below the 0.02 threshold, validating the use of a single-reference formalism and lending confidence to the accuracy of the computed energies at the CCSD(T) level. The triplet isomers (3A′ state, Cs symmetry), shown in the last column of Fig. 2, lie between 16 and 33 kcal mol−1 above the singlet global minimum. Although some triplets present T1 values below 0.034, their high energy rules out that they compete in the relative stability of the system. Regarding the remaining six minima with Si and Ge centers in SiSb2M32+ and GeSb2M32+ (M = Ca, Sr, Ba), these correspond to local minima with energies 1.5 and 4 kcal mol−1 above the global minimum, respectively (see Fig. S14–S19).
To evaluate the kinetic stability of the proposed systems, four representative global minima were selected in total, two with a Si center and two with a Ge center, from the SiE2Ca32+ and GeE2Ca32+ families with E being P and As. BOMD simulations were then performed at 298 and 600 K. Videos included in the SI show that the structures tend to maintain their planarity, with flexible motions of the Ca atoms around the SiE2 and GeE2 fragment. At 600 K, more pronounced thermal fluctuations are observed, particularly in the Ca atoms, which occasionally deviate from the plane without inducing structural rearrangements or isomerization processes. These results support kinetic persistence at both room and moderately elevated temperatures.
All global minima of SiE2M32+ and GeE2M32+ (E = P, As; M = Ca, Sr, Ba) show that the Si/Ge–E distances remain remain constant as M increases and increase from P to As. Hereafter, the notation Si/Ge means “silicon or germanium”. The distances listed in Table 1 are shorter than the sums of the corresponding Pyykkö single-bond covalent radii (2.27 and 2.37 Å for Si–P and Si–As; 2.32 and 2.42 Å for Ge–P and Ge–As). Conversely, the Si/Ge–M1,2 and Si/Ge–M3 distances increase with the size of E and M. When compared to the Pyykkö covalent radii (2.87, 3.01 and 3.12 Å for Si–Ca, Si–Sr and Si–Ba; 2.92, 3.06 and 3.17 for Ge–Ca, Ge–Sr and Ge–Ba, respectively),78 it is observed that the Si/Ge–M1,2 distances are slightly larger, while for Si/Ge–M3 they are longer but shorter than the sum of the van der Waals radii.79
| PG | Gap | r Si−M1,2 | r Si−M3 | r Si−E | q(Si) | q(M1,2) | q(M3) | q(E) | WBISi−M1,2 | WBISi−M3 | WBISi−E | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SiP2Ca32+ | C 2v | 3.46 | 2.87 | 3.01 | 2.18 | −0.53 | +1.70 | +1.71 | −1.30 | 0.093 | 0.003 | 1.48 |
| SiP2Sr32+ | C 2v | 3.23 | 3.03 | 3.19 | 2.18 | −0.52 | +1.74 | +1.75 | −1.35 | 0.069 | 0.003 | 1.49 |
| SiP2Ba32+ | C 2v | 3.31 | 3.20 | 3.38 | 2.18 | −0.49 | +1.74 | +1.77 | −1.38 | 0.071 | 0.003 | 1.48 |
| SiAs2Ca32+ | C 2v | 3.16 | 2.87 | 3.06 | 2.29 | −0.73 | +1.69 | +1.70 | −1.17 | 0.070 | 0.004 | 1.48 |
| SiAs2Sr32+ | C 2v | 2.95 | 3.04 | 3.26 | 2.29 | −0.72 | +1.73 | +1.74 | −1.24 | 0.070 | 0.004 | 1.49 |
| SiAs2Ba32+ | C 2v | 3.14 | 3.21 | 3.45 | 2.29 | −0.68 | +1.73 | +1.75 | −1.26 | 0.072 | 0.005 | 1.49 |
| PG | Gap | r Ge−M1,2 | r Ge−M3 | r Ge−E | q(Ge) | q(M1,2) | q(M3) | q(E) | WBIGe−M1,2 | WBIGe−M3 | WBIGe−E | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GeP2Ca32+ | C 2v | 3.38 | 2.93 | 3.10 | 2.26 | −0.50 | +1.71 | +1.71 | −1.32 | 0.093 | 0.003 | 1.43 |
| GeP2Sr32+ | C 2v | 3.21 | 3.08 | 3.27 | 2.26 | −0.50 | +1.75 | +1.75 | −1.37 | 0.069 | 0.003 | 1.45 |
| GeP2Ba32+ | C 2v | 3.31 | 3.24 | 3.45 | 2.26 | −0.46 | +1.75 | +1.77 | −1.43 | 0.071 | 0.003 | 1.44 |
| GeAs2Ca32+ | C 2v | 3.17 | 2.93 | 3.15 | 2.37 | −0.69 | +1.70 | +1.70 | −1.20 | 0.070 | 0.004 | 1.44 |
| GeAs2Sr32+ | C 2v | 2.95 | 3.08 | 3.32 | 2.37 | −0.69 | +1.74 | +1.74 | −1.26 | 0.070 | 0.004 | 1.46 |
| GeAs2Ba32+ | C 2v | 3.05 | 3.26 | 3.52 | 2.37 | −0.65 | +1.73 | +1.75 | −1.29 | 0.072 | 0.005 | 1.45 |
Natural population analysis (NPA) reveals negative charges on the center Si/Ge and on E, balanced by positive charges on M1,2 and M3 (see Table 1). Generally, variations in the electronegativity of both E and the central atom influence the charge distribution: progressing from phosphorus (P) to arsenic (As) shifts electron density toward the central atom, whereas moving from Si to Ge directs charge density toward E. Notably, the charges on the metal sites (M) remain largely invariant across these changes.
The low WBI values for Si/Ge–M1,2 (0.07–0.09) and Si/Ge–M3 (0.003–0.005) indicated an insignificant covalent contribution (minimal overlap) with interactions dominated by electrostatic, whereas the high values for the Si/Ge–E (1.43–1.49) are consistent with strong two-center covalent bond. In line with the ppC systems reported by Leyva–Parra and co-workers, where C–E bonding is covalent and C–M interactions are weak and largely electrostatic, our Si/Ge-centered systems retain this pattern but the charge distribution changes: as C → Si → Ge, the center becomes less negative, E more negative, and M more positive. In addition, the Si/Ge–E bonds lengthen from P to As, and the Si/Ge–M interaction grows from Ca to Sr to Ba, while remaining weak and predominantly electrostatic.
According to the IUPAC coordination concept,80 the observed arrangement, supported by interatomic distances, NPA charges and WBI, fulfills the geometric criteria for planar pentacoordination at the central atoms. The nature and energetic contribution of the individual interactions are examined in detail in subsequent sections.
To probe the nature and strength of the interactions, energy decomposition analysis combined with natural orbitals for chemical valence (EDA–NOCV) was employed, using the Si/Ge center and the E2M32+ ring as fragments. The total interaction energy (ΔEint) ranges from −213.3 to −242.6 kcal mol−1 and is more stabilizing for Si than for Ge and for P than for As. The orbital term (ΔEorb) dominates the stabilization and contributes between 64 and 70% of the attractive interaction. The electrostatic term (ΔEelstat) accounts for between 30 and 36%, whereas dispersion (ΔEdisp) is minor. Pauli repulsion (ΔEPauli) tends to decrease along the series Si → Ge, P → As and Ca → Sr → Ba, consistent with more diffuse electron clouds in heavier atoms leading to reduced steric repulsion. Overall, lighter centers (Si) and pnictogens (P) enhance the orbital (covalent) component, while Si → Ge or P → As substitutions modestly increase electrostatic character; the effect of M (Ca → Sr → Ba) is minor (see Table 2).
| System | ΔEorb | ΔEelstat | ΔEdisp | ΔEPauli | ΔEint | %ΔEorb | %ΔEelstat |
|---|---|---|---|---|---|---|---|
| SiP2Ca32+ | −812.6 | −358.1 | 0.2 | 929.2 | −241.3 | 69 | 31 |
| SiP2Sr32+ | −806.6 | −353.4 | 0.2 | 917.2 | −242.6 | 70 | 30 |
| SiP2Ba32+ | −786.9 | −348.8 | 0.6 | 895.1 | −240.1 | 69 | 31 |
| SiAs2Ca32+ | −754.4 | −361.4 | 0.0 | 884.5 | −231.3 | 68 | 32 |
| SiAs2Sr32+ | −744.2 | −353.8 | 0.0 | 866.3 | −231.8 | 68 | 32 |
| SiAs2Ba32+ | −725.8 | −347.8 | 0.3 | 844.0 | −229.3 | 68 | 32 |
| GeP2Ca32+ | −712.8 | −363.4 | 0.2 | 855.6 | −220.6 | 66 | 34 |
| GeP2Sr32+ | −712.3 | −362.7 | 0.3 | 852.6 | −222.1 | 66 | 34 |
| GeP2Ba32+ | −699.5 | −359.9 | 0.7 | 837.9 | −220.7 | 66 | 34 |
| GeAs2Ca32+ | −671.6 | −369.8 | 0.0 | 828.2 | −213.3 | 64 | 36 |
| GeAs2Sr32+ | −666.7 | −365.4 | 0.1 | 817.9 | −214.1 | 65 | 35 |
| GeAs2Ba32+ | −653.7 | −360.6 | 0.5 | 801.3 | −212.5 | 64 | 36 |
Decomposition of ΔEorb into NOCV pairs (Fig. 4, shown for the representative SiP2Ca32+) yields four homologous contributions across the series. The first NOCV (∼40% of ΔEorb) represents a σ-bond between the s-orbital of the central atom and a π-orbital from the ring (mainly E atoms). The second (∼20%) corresponds to a π-orbital reorganization in both fragments, and the third (∼20%) to π-cloud formation via intrafragment reorganization. Together they recover ∼80% of ΔEorb. The fourth NOCV represents a center-ring electron-density reorganization rather than an independent two-center Si/Ge–M σ bond, thus enhancing overall cohesion. Polarization increases from Si to Ge but does not develop into a distinct two-center σ bond.
These findings again raise the question of what interaction links the Si/Ge center to M. To complement EDA–NOCV and apply an energy-based interatomic criterion, we next employ the Interacting Quantum the Atoms (IQA) framework. Table 3 summarizes the interatomic components for representative Tt–E, Tt–M1,2, and Tt–M3 pairs (Tt = Si or Ge). Across all global minima, Tt–E interactions are attractive and typically display a comparatively large VXC, except for the SiP2M32+ series, where Si–P is predominantly VC. Planar pentacoordination arises only when all five interactions (two Tt–E and three Tt–M) are attractive in IQA, a condition met only by GeAs2M32+, whose Ge–M interactions are largely Coulombic. By contrast, Tt–M behavior depends on both the pnictogen and the metal: in SiP2M32+, Si–M1,2 and Si–M3 are repulsive (dicoordination); in SiAs2M32+, Si–M1,2 becomes attractive with VXC > VC while Si–M3 remains repulsive (tetracoordination); in GeP2M32+, Ge–M1,2 is attractive with VC > VXC for light metals and shifts toward larger VXC as M becomes heavier, whereas Ge–M3 remains repulsive (tetracoordination); in GeAs2M32+, all three Ge–M interactions are attractive and predominantly Coulombic. Thus, IQA analysis shows that the specific Ge–M interactions enabling genuine pentacoordination are chiefly electrostatic, which reconciles the strong global orbital stabilization found by EDA–NOCV with the absence of a localized Tt–M two-center σ bond.
| SiP2Ca32+ | SiP2Sr32+ | SiP2Ba32+ | SiAs2Ca32+ | SiAs2Sr32+ | SiAs2Ba32+ | GeP2Ca32+ | GeP2Sr32+ | GeP2Ba32+ | GeAs2Ca32+ | GeAs2Sr32+ | GeAs2Ba32+ | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ΔEIQA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| V IntIQA (Tt − E) | −436.1 | −439.1 | −439.4 | −224.6 | −230.3 | −243.0 | −173.7 | −173.7 | −180.0 | −130.7 | −131.6 | −139.6 |
| V IntC (Tt − E) | −282.2 | −285.5 | −289.2 | −59.9 | −66.5 | −83.6 | −4.7 | −4.2 | −13.6 | 31.8 | 30.9 | 19.8 |
| V IntXC (Tt − E) | −153.9 | −153.6 | −150.2 | −164.7 | −163.8 | −159.4 | −169.0 | −169.5 | −166.4 | −162.5 | −162.5 | −159.4 |
| V IntIQA (Tt–M1,2) | 63.2 | 60.5 | 64.7 | −41.9 | −37.2 | −19.0 | −58.8 | −60.2 | −45.4 | −99.2 | −96.2 | −76.7 |
| V IntC (Tt–M1,2) | 86.4 | 83.8 | 89.5 | −15.4 | −11.2 | 8.2 | −36.2 | −37.3 | −20.9 | −74.3 | −71.5 | −50.5 |
| V IntXC (Tt–M1,2) | −23.2 | −23.3 | −24.8 | −26.5 | −26.0 | −27.3 | −22.6 | −22.9 | −24.5 | −25.0 | −24.7 | −26.2 |
| V IntIQA (Tt–M3) | 162.5 | 157.1 | 149.5 | 45.3 | 47.8 | 54.8 | 8.9 | 7.8 | 13.7 | −33.8 | −31.0 | −20.1 |
| V IntC (Tt–M1,2) | 168.6 | 162.6 | 155.6 | 53.8 | 55.3 | 62.8 | 17.0 | 15.4 | 22.1 | −24.6 | −22.6 | −11.0 |
| V IntXC (Tt–M1,2) | −6.1 | −5.5 | −6.1 | −8.5 | −7.5 | −7.9 | −8.1 | −7.6 | −8.4 | −9.2 | −8.4 | −9.1 |
| V IntIQA (E–M1,2) | −379.6 | −373.9 | −344.2 | −301.3 | −299.8 | −278.6 | −302.4 | −298.7 | −275.9 | −262.8 | −261.1 | −241.6 |
| V IntC (E – M1,2) | −315.9 | −313.0 | −274.5 | −242.2 | −242.7 | −213.3 | −238.7 | −238.2 | −206.9 | −202.9 | −203.6 | −176.1 |
| V IntXC (E–M1,2) | −63.7 | −60.9 | −69.7 | −59.1 | −57.1 | −65.3 | −63.7 | −60.5 | −69.1 | −59.9 | −57.5 | −65.5 |
| V IntIQA (E–M3) | −346.4 | −314.4 | −312.2 | −275.0 | −273.6 | −251.8 | −270.2 | −267.5 | −244.8 | −235.6 | −234.6 | −214.3 |
| V IntC (E–M1,2) | −301.6 | −297.5 | −263.3 | −232.4 | −231.6 | −205.2 | −225.9 | −224.0 | −196.5 | −193.0 | −192.6 | −167.8 |
| V IntXC (E–M1,2) | −44.8 | −43.9 | −48.9 | −42.6 | −42.0 | −46.6 | −44.3 | −43.5 | −48.3 | −42.5 | −42.0 | −46.5 |
Even when true planar pentacoordination at the center is not achieved, the structure remains bound because the E–M1,2 and E–M3 interatomic interactions, attractive and predominantly Coulombic, compensate for the lack of bonding between the center and some metals, thereby sustaining the planar geometry.
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