Open Access Article
K. Simmy
Joseph
a,
Brahmananda
Chakraborty
*bc and
Shweta
Dabhi
*a
aDepartment of Physical Science, P. D. Patel Institute of Applied Sciences, Charotar University of Science and Technology, CHARUSAT Campus, Changa, 388421, Gujarat, India. E-mail: shwetadabhi.phys@charusat.ac.in
bHigh Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, India. E-mail: brahma@barc.gov.in
cHomi Bhabha National Institute, Mumbai, 400085, India
First published on 1st October 2025
Growing worldwide environmental concerns linked to the overuse of fossil fuels and rising energy demands are driving a thorough and comprehensive search for clean, sustainable sources of energy. Water electrolysis has recently become a highly appealing method for achieving optimal energy conversion and storage. This study employs density functional theory to investigate the catalytic performance along with the electronic properties of pristine and adatom-doped transition metal (TMs = Sc, Pt, Co, Cr, and Au)-anchored holey graphyne (HGY). Among all considered candidates, Pt-doped HGY gives the best oxygen evolution reaction (OER) with the overpotential equivalent to 0.74 V. This catalyst is deemed optimal for further exploration of the OER mechanism. Through molecular dynamics (MD) simulations, the structural along with thermal stability of Pt@HGY has been confirmed. The convincing results motivate the use of Pt-anchored HGY as an efficient OER mechanism catalyst.
Two-dimensional (2D) materials possess intriguing characteristics, including a substantial surface area, excellent thermal as well as mechanical stability, and adjustable electronic properties, along with versatility in various research domains and applications such as gas sensors, spintronics, energy storage, etc.16,21,22 These attributes have contributed to their increasing popularity in recent times. Examples of these materials include porous carbon compounds like graphene, and transition metal dichalcogenides (TMDCs) such as MoS2, WS2, and VSe2, and hexagonal boron nitride, to name a few.14,15,17,20 Because of the previously described qualities, high sensitivity, selectivity, and quick recovery, 2D materials are now widely used as efficient catalysts to develop electrocatalytic processes.23 Graphene is an exceptionally desirable nanomaterial on account of its remarkable mechanical strength, and phononic and captivating electro-optical characteristics, as it is composed of carbon atoms arranged in the most stable 2D configuration. The characteristics exhibited by graphene have resulted in significant progress within the domains of contemporary chemistry and physics. The electrical structure of graphene, characterised by a zero-bandgap, imposes limitations on its use within the domain of semiconducting materials. Thereupon, it is crucial to identify avant-garde types of two-dimensional carbon allotropes that demonstrate peculiar semiconducting properties, for instance an appropriate energy bandgap and enhanced mobility.24–27 Graphene possesses a honeycomb lattice structure, while graphyne exhibits several geometrical configurations. At present, scholars have predominantly examined four unique geometries of graphynes, viz. a-, b-, g-, and 6,6,12-graphyne.28–30 The remarkable attributes of graphyne make them strong competitors to graphene, especially in specific applications. The design and coalescence of the anecdote carbon allotrope, namely holey graphyne (HGY), was inspired by this intriguing molecule, as reported. The atomic structure of HGY is characterised by the presence of uniform pores arranged in 6, 8, and 24 vertex rings. The rings are surrounded by acetylene connections of zero, two, and six, which are produced through sp–sp bonds. Two C atoms from the benzene ring are joined to 2 C atoms from the following octagon to provide a 50% sp to sp2 C ratio.31 It was previously found that HGY is composed of a p-type semiconductor that has elevated electron and Hall mobilities. At ambient temperature, the system exhibits a hole mobility of 2.13 × 109 cm2 V−1 s−1, an electron mobility of about 104 cm2 V−1 s−1, and a band gap of 1.0 eV.32 Then, in 2021, Gao et al. determined that the overall gravimetric density of Li-coated HGY could surge to 12.8% when they investigated its H2 storage capacity.33 An investigation conducted in 2022 by Xinghui et al. examined the stability, vibrational, and optical properties of HGY. The researchers discovered that HGY sheets synthesized with AB stacking are exceptionally crystalline. The semiconducting nature, non-linear sp bonding, and unique pi-conjugated structure of HGY make it very suitable for a wide range of applications.34 In their research, Juhee et al. investigated the adsorption and desorption properties of hydrogen (H) in the Ti-functionalized HGY system. It was also observed that the titanium atom exhibits an adsorption energy of −0.38 electron Volt per hydrogen atom, which allows it to gather seven H2 molecules. The outcome of this process yields a hydrogen gravimetric density of 10.52 weight percent.35 Subsequently, the H storage potential of HGY anchored with Sc as well as Y was examined by Mukesh et al. They discovered that the gravimetric densities could reach 9.80% and 9.34%.36 In a study conducted in 2023, Seetha et al. examined the detection of ammonia on HGY, decorated with Cu, Sc, and Pd. The results showed that among all the decorations, Sc-doped HGY was identified as the best NH3 sensor. At a temperature of 600 K, the sample demonstrated an adsorption energy of 1.49 eV, a notable charge transfer of 0.113e, and a recoverable time of 3.2 s.37 Darshil et al. conducted a study which showed that the HGY catalysts, doped with different TMs like Fe, Cr, and Co, exhibit a high level of activity for the HER with ΔG values as low as −0.21, −0.14, and −0.05 electron Volt.31 Manman et al. found that SACs buoyed by graphydiyne and holey graphyne are a potential option for the CO2RR after studying them using machine learning. By considering the complete elemental miscellany of metal sites across the periodic table, it was discovered that 25 catalysts could both successfully activate CO2 along with the HER.38 Muhammad et al. examined the potential of HGY for battery applications, and it was observed that compared to other carbonaceous materials (200–500 mAh g−1 for Na and 450–750 mAh g−1 for Li) and traditional graphite anodes (372 mAh g−1 for Li and <35 mAh g−1 for Na), Na (558 mAh g−1) was revealed to have much larger storage capacities.39 Bohayra examined the mechanical, electrical, and thermal characteristics of C and BN-HGY and discovered that the semiconducting C-HGY along with insulating NB-HGY system had moderate lattice thermal conductivity and ultrahigh negative thermal expansion coefficients.40 Yong et al. have examined a higher-order topological invariant connected to the material's C2 symmetry and proved that the ensuing corner modes materialize in nanoflakes that match the hitherto disclosed precursor structure.41 While initial theoretical reckoning of HGY have been documented for applications such as hydrogen storage, battery technology, and catechol detection; HGY's potential as a general water splitting mechanism involving certain transition metals with the OER remains unexplored.
In this study, we report using DFT simulations, an unprecedentedly potent way of oxygen evolution via pristine and transition metal (TM = Au, Co, Cr, Pt, and Sc) HGY monolayers. The utilisation of theoretical simulations aids in the clarification of the adsorption mechanism at the orbital level. These insights include favourable adsorption configurations, adsorption energy, bonding angle and distance, charge transfer, and binding energy. In light of theoretical considerations such as adsorption energy, Löwdin charge analysis and partial density of states, the phenomenon of charge transfer has been examined. Additionally, it has been observed that even at extremely high temperatures up to 500 K, the Pt element maintains its binding with HGY. These ab initio molecular dynamics simulations provide additional substantiation for the thermal stability of the system.
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| Fig. 1 (a) Top and (b) side view of HGY, and (c) pictorial depiction of HGY for OER activity with possible adsorption sites represented by pink circles. Colour scheme: silver C; pink OER activity. | ||
The scrutiny of pristine HGY and its function in the OER process of water splitting will be covered. O adsorption alone is not a reliable signal for forecasting OER reactions, according to a literature review. The entire activity of the OER, comprising OH, O, and OOH intermediates, has been distinctly surveyed in this research work. The adsorption geometries of HGY with the potential adsorption sites are shown in Fig. 1(c).
Fig. 1 shows the optimised geometry of the HGY monolayer from both (a) top view and (b) side perspectives. The optimal bond lengths (Å) along with the bond angles (°) of OER intermediates (O, OH, and OOH) adsorbed at various potential adsorption sites (P1–P9) on pristine HGY are summarized in Table S1. The lengths of the C–C bonds proximal to the binding site for O adsorption range from 1.21 to 1.32 Å, whereas those next to the binding site extend slightly up to 1.47 Å. The site-dependent lattice distortions caused by O anchoring are indicated by the large fluctuation in the C–C–O bond angles, which range from 61.9° at P4 to as high as 143.3° at P2 and P5. In accordance with molecular stability, the O–O (≈1.36–1.38 Å) and O–H (≈0.98 Å) bond lengths in the event of OOH adsorption stay almost constant across all locations. Disparities in adsorption strength and contact distance with the HGY surface are reflected in the O–C bond lengths, which range greatly from 2.47 Å (P1) to 3.10 Å (P9). The angular parameters likewise exhibit a substantial dependency on the adsorption site: the O–O–H angle is typically about 103°, the C–C–O angle ranges from 83.5° (P4) to 114.3° (P7), and the C–O–O angle ranges from 107.6° (P1) to 173.2° (P7). According to these findings, the inherent OOH geometry is maintained, although the binding orientation and HGY interaction differ considerably depending on the adsorption location.
Overall, the structural study shows that O adsorption results in localized bond distortions, while OOH adsorption, particularly at sites P7 and P9, produces greater fluctuations in adsorption distance along with angular distortion. The sensitivity of pristine HGY to intermediate binding is highlighted by its site-specific structural flexibility, which is essential for comprehending its catalytic action in the OER. Although stronger binding sites like P1 and P2 run the risk of over binding and impairing the reaction kinetics, they may effectively stabilize intermediates. On the other hand, OOH, the crucial intermediate in the OER, is frequently destabilized by weaker binding sites like P7 and P9, which lessens its catalytic significance.
In order to provide a detailed elucidation of the adsorption reaction mechanism, the HGY transition state was calculated. Initially, the reaction included a proton being transferred to an adsorbed OH molecule via a surface-adsorbed H2O molecule. A proton is released by the adsorbed hydroxide (OH), creating an adsorbed atomic oxygen. Adsorbed hydroperoxyl (OOH) is the result of this atomic oxygen's subsequent reaction with OH− (hydroxide). The adsorbed OOH and its original surface were transformed into molecular O2 in the fourth step. Fig. 2 illustrates the adsorption of OH on the slab and the genesis of *OOH by the adsorption of *O on OH, releasing energy in accordance with chemical principles. According to the Gibbs free energy diagram, spontaneity was not seen, however, since an external electric field was necessary to perturb the initial electric field balance and promote the movement of the adsorption group. The anaerobic HGY adsorbs species including *O and *OH, as well as *OOH, as depicted in Fig. 2. To ascertain the adsorption energies of the species *OH, *O, and *OOH, we individually attach each species to a different site, such as the top, hollow, and bridge of the carbon atom. Subsequently, we relax the geometry of the system, as illustrated in Fig. 1(c). The hollow sites are denoted by P6, P7, P8, and P9, while P3, P4, and P5 represent the bridge sites between the two carbon atoms, and P1 and P2 represent the C top sites.
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| Fig. 2 Schematic representation of the typical OER pathway for pristine HGY. Colour scheme: silver C; red O; green H. | ||
The OER is accomplished using procedures (5) to (9) from the SI. The free energy of the reaction was calculated for each individual step.
| ΔG = ΔE + ΔEZPE − TΔS + ΔGU + ΔGpH | (1) |
The symbol ΔE signifies the total energy change between the initial reactants and final products in a chemical process. The zero-point energy corrections are denoted by ΔZPE. ΔS denotes the alteration in vibrational entropy with respect to a particular temperature T. ΔGU is equivalent to −eU, where U denotes the electrode potential and e− signifies the fundamental charge. The correction for H+ free energy is expressed as ΔGpH.10
The overpotential, symbolised as η, is calculated by comparing the Gibbs free energy differences at each stage.
| ηOER = max{ΔG1, ΔG2, ΔG3, ΔG4}/e − 1.23 | (2) |
Fig. 3 illustrates the computed reaction energies associated with each OER process taking place at the active sites, as well as the excess potential of pristine HGY. For the purpose of assessment, the utmost reaction energies for the HGY sites were computed as follows: 3.09, 4.12, 2.64, 3.14, 4.12, 3.22, 3.80, 4.03, and 3.93 eV for P1, P2, P3, P4, P5, P6, P8, and P9 (step 3 from OH* to OOH*), and P7 (step 1 from * to OH*). The overpotential values for P1 to P9 are 1.86, 2.89, 1.41, 1.91, 2.89, 1.99, 2.57, 2.80, and 2.70 V, respectively. Following this, the OER activity declines in the subsequent order: P2 > P5 > P8 > P9 > P7 > P6 > P4 > P1 > P3. Inferring from the data from Fig. 3, the activity of the P3 site (bridge site 1) for the OER surpasses those of the other sites of HGY.
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| Fig. 3 Free energy diagram of the OER for pristine HGY for all possible sites at zero potential. The black line is the rate determining step of OER activity. (a)–(i) represents sites P1–P9. | ||
The octagon void shown in Fig. 4(a) has been used to anchor the TMs (Au, Pt, Co, Cr, and Sc). The prediction of a structural modification in the HGY is evident from Table S2, which indicates that the interaction between the HGY support and TMs induces a modification in the HGY upon their introduction. The average distances between transition metals (Pt, Sc, Au, Cr, and Co) and the carbon atoms of the HGY support are 2.07, 2.77, 3.06, 2.07, and 1.97 Å, for transition metals attached to HGY.
According to the following relationship, the binding energy is a crucial factor in the recurrent usage of single atom catalysts (SACs):
| Eb = E(TMs/HGY) − E(HGY) − E(TM) | (3) |
The aggregate energy of the HGY system doped by TMs is designated as E(TMs/HGY), the isolated TM atom's total energy is epitomized by E(TM). The Eb values of the TMs (Au, Co, Cr, Pt, and Sc) on HGY were determined in the current work to be −1.40, −2.44, −5.69, −2.45, and −3.60 eV, respectively, using eqn 3. HGY doped with a distinct TM support exhibits a negative magnitude of Eb, which implies a firm binding combined with suitable appropriateness for the substrate of the catalyst (refer to Fig. 4(b)). For instance, Darshil et al. found that Zr, Y, V, Sc, Mn, Co, and Fe had binding energies of −4.72, −3.57, −5.23, −2.50, −2.44, −2.27, and −5.69 eV on HGY, respectively.31 Likewise, the binding energies of −4.09 and −0.69 eV for Sc- and Pd-doped HGY were reported by Seetha et al.49 In comparison, our calculated binding energy for Sc is −4.05 eV, which falls well within the range of previously reported values. A direct comparison, particularly for Sc and other metals, indicates that the slight variations observed among the studies mainly results from differences in pseudopotentials and basis sets used in computational packages such as QE and VASP. Overall, our findings confirm consistency and reliability, as the obtained binding energies align with established literature values.
Simulations were performed by keeping oxygen atom at 2 Å atop the TMs, to investigate the OER process of adatom doping of TMs on HGY. Next, as shown in Fig. 4(c–f [top view] and g–j [side view]), we proceeded to analyse the intermediates of the OER activity, O, OH, and OOH. The adsorption of intermediates causes a modest or minimal change in structural characteristics like bond length and angle in HGY, SACs anchored by TMs. Table S2 makes it evident that this is because of the liaison that takes place between TMs and intermediates. To facilitate comparison, Tables S1 and S2 detail alterations in structural parameters, such as bond length and bond angle, between the HGY-anchored intermediate and TMs HGY SACs. The distance between intermediates such as C–O, O–H, and O–O is between 0.97 and 3.10 Å. The bond lengths spanning from 0.96 to 1.99 Å exist between intermediates such as TM–O, O–H, and O–O, as well as O–H.
In the context of the OER, 4.92 eV is the total energy required to break down water. For the reaction to continue efficiently, the ΔG for each elementary stage in the OER should ideally be minimized. Specifically, the overpotential of the OER must be at least 1.23 eV. Hence, foremost efficient OER catalysts’ intermediate Gibbs free energy values will position the total reaction energy around or beneath this threshold. Gibbs free energy profiles and over potential are shown in Fig. 6(a–e) to illustrate the OER process that occurs at the loftiest TMs, comprising Au, Co, Cr, Pt, and Sc, throughout the reaction route.
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| Fig. 6 Gibbs free energy diagram of the OER for (a) Au, (b) Co, (c) Cr, (d) Pt, and (e) Sc in HGY at zero potential. | ||
The maximum reaction energies for the HGY system are found to be as follows: 2.40 eV for Au@HGY (step 2 involves the transformation from OH* to O*), 2.54 eV for Co@HGY [(*OOH to O2) in step 4], 3.19 eV for Cr@HGY [(*O to *OOH) in step 3], 1.97 eV for Pt@HGY [(*O to *OOH) in step 3], and 3.32 eV for Sc@HGY [(*OOH to O2) in step 4]. It is found that the maximum reaction energy for Pt@HGY is 1.97 eV, which is significantly closer to the ideal value of 1.23 eV. To boost the OER process, Pt@HGY helps to strengthen the link that forms between the catalyst's surface and the *O intermediate.
The d-band centre is widely recognized as a valuable descriptor for quantifying the strength of the interaction amid adsorbates and catalysts on various surfaces. The following equation is used to determine the d-band centre:
![]() | (4) |
The energy width of the d orbital is represented by ε, while the density of states is represented by ρ.50 The d orbital of the metal atom has a major impact on the surface electronic structure of transition metals. The projected density of states (PDOS) along with the d band centre εd of OH, O, and OOH adsorption on Pt@HGY were investigated in order to better understand the binding properties of the species involved in the associative mechanism (Fig. 7(a–c)). After the intermediates are adsorbed, the d-band centre of each model shows a direction irreconcilable to the Fermi level, with values ranging from −1.15 eV. The metal forfeits excess electrons in order to form an equitable bond with the intermediate due to electron exchange hybridization between the d orbits of Pt@HGY and the sp orbits of the intermediate; additionally, a larger and less appropriate d band centre indicates an enhanced occupancy of antibonding orbitals after the d band of the metal catalyst hybridizes with the s/p band of the adsorbate, leading to the dissociation barrier of the reactants along with enabling the desorption of intermediates across the catalytic reaction system. Moreover, the d band centre boosts by 4.14 electron Volt due to the connection that links H and *OH creating *O. This result supports the theory that electrons can occupy the antibonding orbitals when the H atom is present. Likewise, when the *O is bonded with the –OH, it experiences greater electron loss due to orbital hybridization; as a result, the *OOH exhibits a greater density of states in proximity to the Fermi level, which further reduces the d band centre. According to these findings, the electronic field as well as metal properties have a direct bearing on the OER of the Pt@HGY system. The electronic properties of O, H, C, and Pt atoms are compared, and it is found that O exhibits the optimum electronegativity. Additionally, the *O and *OOH formation phases were chosen because the incarnation of *O or *OOH was the crucial step in pursuing the redistribution of charge, and comprehending that the d block of the Pt atoms that exist in Pt@HGY for the OER mechanism are extensive versus a single atom of O as well as H. In all phases comprising the intermediates, Fig. 7 shows that the interaction between Pt and C is almost the same. It is found that the interaction betwixt O and Pt is negligible for both *O and *OOH when the Löwdin charge for transition state 3 amid the *O and *OOH is critiquing. Fig. 7(f) makes it clear that when OOH is attached, the charges of oxygen atoms only slightly change, yet the charges of H atoms drop relative to OH [Fig. 7e]. Table S2, where the bond length represents the electron cloud of the two elements, offers an additional comprehension method. According to Table S2, Pt@HGY + OH has a bond length of 1.82 Å between Pt and O. Likewise, Pt@HGY + OOH has a total bond length of 4.4 Å, with the bond lengths among Pt–O, O–O, along with O–H being 1.98, 1.45, and 0.97 angstrom. An increase in bond length, which results in a decreased occurrence of charge transfer, is responsible for the H atom's charge decreasing from −0.26 to −0.36e. It is clear that the total charges show an upward trend in transition state III, which is betwixt the *O and *OOH functional groups. This observation suggests that the overall direction of electron transmission during the hydroxyl adsorption process is from the bottom to the top. A new charge equilibrium is ultimately established by the structure following the adsorption process.
The significance of the d-band centre as a crucial electronic structural descriptor controlling the OER catalytic activity has been demonstrated by a number of earlier investigations. In order to facilitate charge transfer and catalytic performance, Guoyu et al. reported that the FeCu/NC catalyst has an optimally positioned d-band centre at about −1.806 eV, which correlates with its low OER overpotential and enhanced density of states (DOS) near the Fermi level.48 Similar to this, Sun et al. showed that the OER overpotential of Ir@NiN2 (0.28 V) is linearly related to the location of the metal d-band centre, indicating its crucial function in regulating the catalytic efficiency and adsorption strength.51
,
, and
). The scaling relationship between the
and
of the analyzed HGY and TM-doped HGY are shown in Fig. 8(a). Among the four elementary stages, the deprotonation process
, or the creation of OOH species
typically exhibits the highest free energy shift, serving as the PDS. Additionally, the difference between
and
can be employed as a descriptor of overpotential (η) in the volcanic map based on the scaling relationship betwixt
and
. The scaling relation, where
, is usually met, as Fig. 8(a) illustrates. A good match is demonstrated by the intercept and slope, which have modest deviations within a respectable range (R2 = 0.85).
![]() | ||
Fig. 8 (a) Scaling relations between and ; (b) volcano curve between negative OER overpotential (−ηOER) and for HGY and TM@HGY. | ||
The overpotential ηOER can be computed by comparing the potentials of
and
, as the potential determining stages of the OER for both pristine as well as TM-doped HGY predominantly occur during the ΔG3 (OOH* to O*) transition. The ηOER was characterized using the
descriptor, and a graph of the volcano curve can be produced (refer to Fig. 8(b)). The matching overpotentials for every type are additionally presented in the volcano plot for easy viewing. Therefore, the discovery of the Pt top in HGY at the volcano's summit attests to the system's better electrocatalytic activities relative to other pristine sites and TM-anchored HGY.
Using MD simulations at an equilibrium temperature of 500 K, the bond length variation of C–C (1.32 Å) and Pt–C (1.98 Å) atomic pairs has been shown over a period of 3500 fs (Fig. 9(a)). According to the research, these atomic pairs obligated a net bond length fluctuation of 1.18% and 2.59%. The slight variation seen could be attributed to the thermal excitations causing the mobility of the Pt atom. Considering the thermal vibrations of the Pt atom, the higher temperature does not have a notable impact on the stability of the adorned structure. Therefore, the doping of Pt on the HGY system is likely to remain very stable even at elevated temperatures, which makes the system well-suited for adsorbing intermediates intricate in the OER mechanism. Fig. 9(b) displays the variations in temperature and total energy as a function of the simulated time steps. No signs of deterioration were observed in the Pt@HGY framework, confirming the thermodynamic stability of the structure at high temperatures.
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| Fig. 9 (a) Bond length fluctuation of Pt–C and C–C atomic pairs of Pt@HGY at 500 K and (b) temperature along with total energy fluctuation with respect to the MD simulation step at 500 K for Pt@HGY. | ||
A comprehensive comparison between the present work, HGY and TM-anchored HGY, and previously reported nanomaterials is presented in Table 1. Based on the results presented in Fig. 5, it can be concluded that Pt's OER activity in HGY surpasses that of both pristine and other doped TMs, such as Au, Co, Cr, and Sc.
| System | η (V) | Ref. |
|---|---|---|
| Co@GY | 0.77 | 52 |
| Ni@3B-GY | 0.53 | 52 |
| graN-γ-GY@Rh | 0.27 | 53 |
| Co@R graphyne | 0.74 | 54 |
| Ni@R graphyne | 0.31 | 54 |
| Ni@H4,4,4-GY | 0.34 | 55 |
| Co@GY/Mn@GY | Co = 0.92 | 56 |
| Mn = 2.96 | ||
| Co@GY/Fe@GY | Co = 0.98 | 56 |
| Fe = 1.62 | ||
| Co@GY/Ni@GY | Co = 0.38 | 56 |
| Ni = 0.86 | ||
| Co@GY/Cu@GY | Co = 0.78 | 56 |
| Cu = 1.21 | ||
| Co@GY/Co@GY | 0.55 | 56 |
| Co@GY/GY | 0.53 | 56 |
| Ni@S-GPY | 0.43 | 57 |
| Pt@S-GPY | 0.59 | 57 |
| Ir@S-GPY | 0.36 | 57 |
| Pd@S-GPY | 0.40 | 57 |
| HGY | 1.41 | Present work |
| Pt@HGY | 0.74 | Present work |
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