Proteogenomic analysis reveals non-small cell lung cancer subtypes predicting chromosome instability, and tumor microenvironment

Kyu Jin Song, Seunghyuk Choi, Kwoneel Kim, Hee Sang Hwang, Eunhyong Chang, Ji Soo Park, Seok Bo Shim, Seunghwan Choi, Yong Jin Heo, Woo Ju An, Dae Yeol Yang, Kyung-Cho Cho, Wonjun Ji, Chang-Min Choi, Jae Cheol Lee, Hyeong-ryul Kim, Jiyoung Yoo, Hee-Sung Ahn, Gang-Hee Lee, Chanwoong Hwa, Seoyeon Kim, Kyunggon Kim, Min-Sik Kim, Eunok Paek, Seungjin Na, Se Jin Jang, Joon-Yong An and Kwang Pyo Kim

Nat Commun, 2024, 15
DOI: 10.1038/s41467-024-54434-4

Unveiling hidden connections in omics data via pyPARAGON: an integrative hybrid approach for disease network construction

Muslum Kaan Arici and Nurcan Tuncbag

Briefings in Bioinformatics, 2024, 25
DOI: 10.1093/bib/bbae399

A multi-modal framework improves prediction of tissue-specific gene expression from a surrogate tissue

Yue Xu, Chunfeng He, Jiayao Fan, Yuan Zhou, Chunxiao Cheng, Ran Meng, Ya Cui, Wei Li, Eric R. Gamazon and Dan Zhou

eBioMedicine, 2024, 107, 105305
DOI: 10.1016/j.ebiom.2024.105305

Regulatory Mechanisms of Fumonisin Biosynthesis and Applications in Food Safety and Biotechnology

Lei Fan, Yuqing Lei, Zhihui Qi, Haiyang Zhang, Lin Tian and Fang Tang

Microbiology Research, 2025, 17, 4
DOI: 10.3390/microbiolres17010004

Opportunities offered by latent-based multiblock strategies to integrate biomarkers of chemical exposure and biomarkers of effect in environmental health studies

Étienne Babin, Evelyne Vigneau, Jean-Philippe Antignac, Bruno Le Bizec and German Cano-Sancho

Chemosphere, 2024, 361, 142465
DOI: 10.1016/j.chemosphere.2024.142465

Review: Cancer and neurodevelopmental disorders: multi-scale reasoning and computational guide

Ruth Nussinov, Bengi Ruken Yavuz, Habibe Cansu Demirel, M. Kaan Arici, Hyunbum Jang and Nurcan Tuncbag

Front. Cell Dev. Biol., 2024, 12
DOI: 10.3389/fcell.2024.1376639

Integrative Multi-Omics Approaches for Personalized Medicine and Health

Prateek Tiwari, Raghvendra Pandey and Sonia Chadha

CBIO, 2026, 21, 109
DOI: 10.2174/0115748936360644250127095005

From Serendipity to Precision: Integrating AI, Multi-Omics, and Human-Specific Models for Personalized Neuropsychiatric Care

Masaru Tanaka

Biomedicines, 2025, 13, 167
DOI: 10.3390/biomedicines13010167

Translational Bioinformatics and Multi-Omics Integration for AI-Driven Biomarker Discovery in Precision Oncology

Kaan Kara and Tuba Günel

acin, 2026, 0, 1
DOI: 10.26650/acin.1799569

Decoding the Tumor Microenvironment: Insights and New Targets from Single-Cell Sequencing and Spatial Transcriptomics

Shriya Pattabiram, Prakash Gangadaran, Sanjana Dhayalan, Gargii Chatterjee, Danyal Reyaz, Kruthika Prakash, Raksa Arun, Ramya Lakshmi Rajendran, Byeong-Cheol Ahn and Kandasamy Nagarajan Aruljothi

CIMB, 2025, 47, 730
DOI: 10.3390/cimb47090730

A guide to multi-omics data collection and integration for translational medicine

Efi Athieniti and George M. Spyrou

Computational and Structural Biotechnology Journal, 2023, 21, 134
DOI: 10.1016/j.csbj.2022.11.050

Metabolomics of natural samples: A tutorial review on the latest technologies

Ali Baba Eshawu and Vihang Vivek Ghalsasi

J of Separation Science, 2024, 47
DOI: 10.1002/jssc.202300588

RadWise: A Rank-Based Hybrid Feature Weighting and Selection Method for Proteomic Categorization of Chemoirradiation in Patients with Glioblastoma

Erdal Tasci, Sarisha Jagasia, Ying Zhuge, Mary Sproull, Theresa Cooley Zgela, Megan Mackey, Kevin Camphausen and Andra Valentina Krauze

Cancers, 2023, 15, 2672
DOI: 10.3390/cancers15102672

Further Introduction of DNA Methylation (DNAm) Arrays in Regular Diagnostics

M. M. A. M. Mannens, M. P. Lombardi, M. Alders, P. Henneman and J. Bliek

Front. Genet., 2022, 13
DOI: 10.3389/fgene.2022.831452

Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context

Vivian Robin, Antoine Bodein, Marie-Pier Scott-Boyer, Mickaël Leclercq, Olivier Périn and Arnaud Droit

Front. Mol. Biosci., 2022, 9
DOI: 10.3389/fmolb.2022.962799