Shigehisa
Akine
*ab,
Masato
Nakano
b,
Yoko
Sakata
abc and
Seiji
Tsuzuki
d
aNano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan. E-mail: akine@se.kanazawa-u.ac.jp
bGraduate School of Natural Science and Technology, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
cGraduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
dDepartment of Applied Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
First published on 10th July 2025
A xanthene-based macrocyclic π-containing imine ligand, H4L2, was newly designed and synthesized in order to obtain a series of metal-containing planar structures. Due to the xanthene framework with the methylene bridge, the macrocyclic molecule, H4L2, had a more planar structure than the corresponding diaryl-ether-type analogue, H4L1. This macrocyclic molecule, H4L2, was converted into the dinuclear nickel(II) complex, L2Ni2, which was characterized by spectroscopic techniques as well as crystallography. The planarity of the macrocyclic ligand, H4L2, was greatly improved by the introduction of two Ni2+ ions. Furthermore, the L2Ni2 molecule became more planar by incorporation of a Na+ ion in the central O6 binding cavity. Thus, the xanthene-based macrocycle, H4L2, allowed complexation with two different metal ions, Ni2+ and Na+, to demonstrate a two-step improvement in the planarity.
The planarity of some macrocyclic π-containing molecules can be easily controlled by the incorporation of guest species into the cavity, because the macrocyclic compounds generally show a good host–guest binding affinity. For example, the properties of porphyrin derivatives can be altered by protonation6 and metalation7 in the binding pocket, axial functionalization on the metal ions,8etc., although the porphyrin derivatives are generally less flexible to allow a rather smaller conformational change. If a macrocyclic molecule has a larger cavity with two or more binding sites to accommodate multiple guest species, the planarity could be more drastically controlled, perhaps in a multistep manner by using two or more different types of guest species.
In this respect, the macrocyclic imine ligand, H4L1 (Scheme 1a (i)), which we have previously reported, exhibited a unique two-step planarity enhancement, because this molecule has two types of binding sites inside the macrocyclic structure containing six benzene rings, i.e., two H2saloph‡ coordination pockets doubly connected by diaryl ether linkages and one central O6 binding site.9–13 The structure of H4L1 in the absence of metal ions is far from flat, but when Ni2+ ions are introduced into the saloph sites of this molecule, the two square planar [Ni(saloph)] structures are formed to make the L1Ni2 macrocycle relatively more planar (Scheme 1b (i)).9,10 However, this L1Ni2 is still significantly deviated from an ideal planar structure, although the parent [Ni(saloph)] motif is known to be highly planar.14 Particularly, the two [Ni(saloph)] substructures in the L1Ni2 macrocycle are curved in opposite directions to each other mainly due to the steric hindrance of the ortho hydrogen atoms in the diaryl ether moieties (Scheme 1b (i)).
If these two neighboring ortho hydrogen atoms are replaced with a bridging methylene group to make a xanthene motif, the resultant macrocycle is expected to be more planar. This structural modification would lead to unique properties originating from the more effective π-conjugation and facilitate the formation of higher-order stacking structures.9–11,15 In this study, we synthesized the macrocyclic imine ligand, H4L2, based on the xanthene motif (Scheme 1a (ii)), which can be converted into a planar dinickel(II) complex, L2Ni2 (Scheme 1b (ii)). We found that the planarity of the macrocyclic ligand, H4L2, was greatly improved by introduction of two Ni2+ ions. Furthermore, the L2Ni2 molecule became more planar by incorporation of Na+ ion into the O6 binding cavity, demonstrating a two-step improvement in the planarity (Scheme 1c).
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| Scheme 2 Synthesis of xanthene-based macrocyclic ligand H4L2 and the corresponding metallohost L2Ni2. | ||
The [2 + 2] macrocyclization of the dialdehyde 4 with o-phenylenediamine readily proceeded in a chloroform/acetonitrile (1
:
1) mixed solvent (Scheme 2). The macrocyclic ligand, H4L2, was obtained in 89% yield as orange crystals (Fig. S7–S11†). The product showed one singlet each for the imine proton at 8.99 ppm and the hydroxy proton at 13.82 ppm, indicative of the formation of a symmetric macrocyclic molecule. The mass spectrum showing m/z = 741.3 for [H4L2 + H]+ confirmed the [2 + 2] macrocyclic structure of H4L2 (Fig. S12†). This compound was almost insoluble in pure chloroform or acetonitrile, while slightly soluble in DMSO.
The reaction of H4L2 with nickel(II) acetate in chloroform/methanol then afforded the dinuclear nickel(II) metallohost, L2Ni2, in 56% yield (Scheme 2; Fig. S13†). This metallohost showed a very low solubility in common organic solvents, and only very slightly soluble in DMSO.
The relative stability of the two conformations of H4L2 was investigated by DFT calculations. The geometry optimizations were performed starting from the crystal structures, H4L2-A and H4L2-B, to obtain the corresponding optimized structures, H4L2-a and H4L2-b, respectively (Fig. S14†). The molecule of H4L2-a, which has a V-shaped structure, was more stable by 7.03 kJ mol−1 than H4L2-b having a step conformation.
In contrast to the metal-free macrocycle, H4L2, the corresponding nickel(II) complex has a more planar structure. The nickel(II) complex, L2Ni2, crystallized in the monoclinic system, space group P21/n, and the crystal structural analysis clearly demonstrated a macrocyclic structure containing two square planar nickel(II) ions in the saloph coordination pockets (Fig. 1c and d). The unit cell contains two crystallographically independent molecules, L2Ni2-A and L2Ni2-B hereafter, in a 2
:
1 ratio. The L2Ni2-A molecule had no crystallographically-imposed symmetry and was slightly bent to form a shallow V-shaped structure (Fig. 1c). The L2Ni2-B molecule had a crystallographically-imposed inversion center (Fig. 1d). The two xanthene moieties are slightly bent in the opposite directions to form a step-like conformation.
The geometry optimizations of L2Ni2 starting from the two structures, L2Ni2-A and L2Ni2-B, gave the corresponding energy-minimized structures, L2Ni2-a and L2Ni2-b, respectively, but both optimized structures were significantly curved unlike the nearly planar structures found in the crystalline state (Fig. S15†). L2Ni2-a is more stable than L2Ni2-b by only 2.97 kJ mol−1, suggesting that both conformations as well as those in the crystalline state are present in the solution.
The macrocyclic metallohost, L2Ni2, was expected to show a binding affinity to cationic guest species, because it has a crown ether-like cavity. Indeed, the diaryl ether analog, L1Ni2, and related compounds showed an excellent binding affinity to alkali metal ions, etc., mainly due to the more polarized phenoxo–Ni bonds.9–11,17 In addition, Na+ was the best metal to be accommodated in the binding cavity of L1Ni2 in a monomeric 1
:
1 stoichiometry. However, the guest binding behavior of L2Ni2 could not be investigated due to its very low solubility. Nevertheless, single crystals of the guest-inclusion complex, [L2Ni2Na(DMSO)2](OTf), was directly obtained by mixing H4L2, Ni(OAc)2, and NaOTf in a methanol/DMSO solution followed by vapor-phase diffusion of diethyl ether.
The X-ray crystallographic analysis (Fig. 2) showed that a Na+ ion was situated at the center of the O6 cavity, exactly on the O6 mean plane. The six Na–O distances are almost the same within a range of 2.531–2.665 Å, approximately forming a regular hexagon. This metallohost–guest complex, L2Ni2Na, adopted an almost planar but slightly wavy structure, and two DMSO molecules coordinated to the Na+ ion from above and below the macrocyclic plane. In the packing structure, the planar [Ni(saloph)] substructures in this complex were stacked on top of each other in such a way that they avoided these coordinating DMSO molecules. The counter anion did not directly coordinate to any of the metal centers, Ni2+ or Na+.
![]() | ||
| Fig. 2 X-ray crystal structure of [L2Ni2Na(DMSO)2]+ (ORTEP, 50% probability). Hydrogen atoms are omitted for clarity. Noncoordinating DMSO molecule and the TfO− counter anion are not shown. | ||
The DFT calculations gave the optimized structure of the inclusion complex, [L2Ni2Na]+, with the coordinating DMSO molecules omitted (Fig. S16†). The calculated host–guest interaction energy between L2Ni2 and Na+ using the optimized geometry was −528.5 kJ mol−1. The destabilization by deformation of the L2Ni2 macrocycle caused by the formation of the Na+ complex was calculated to be only 17.1 kJ mol−1, indicating that the uncomplexed L2Ni2 already has a structure suitable for Na+ binding. As a result, the stabilization energy upon the formation of [L2Ni2Na]+ from L2Ni2 and Na+ was determined to be −528.5 + 17.1 = −511.4 kJ mol−1, which corresponds to the binding energy in the gas phase. In solution, the formation of [L2Ni2Na]+ requires desolvation of Na+; therefore, the binding energy in solution is expected to be much smaller (less negative). From the viewpoint of the small deformation energy associated with complex formation, along with favorable geometrical matching, this L2Ni2 macrocycle appears to be well preorganized for the Na+ binding.
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| Fig. 3 Definition of planarity parameters (a) ddev, (b) θa, and (c) θb. (d) Comparison of the planarity parameters for H4L1, L1Ni2, L1′Ni2Na, H4L2, L2Ni2, and L2Ni2Na. | ||
| Structure |
d
OO(X) a (Å) |
d
OO(P) b (Å) |
d
dev c (Å) |
θ
a d (°) |
θ
b e (°) |
CShMf |
|---|---|---|---|---|---|---|
| a The diagonal O⋯O distance between the xanthene oxygen atoms. b The diagonal O⋯O distance between the phenoxo oxygen atoms. c Average RMS deviation of the 40 skeletal carbon and 4 nitrogen atoms from the O6 mean plane (Fig. 3a). d The dihedral angle between the xanthene mean plane and the macrocyclic O6 mean plane (Fig. 3b). e The dihedral angle between the two benzene rings in each xanthene unit (Fig. 3c). f Continuous shape measure (CShM) value for the geometry calculated with the program SHAPE 2.1.18 g [L2Ni2Na(DMSO)2](OTf). h [L1′Ni2Na](OTf). | ||||||
| H4L2-A | 6.612(3) | 5.683(2) | 1.36 | 39.12(4) | 27.28(10) | 3.486 |
| H4L2-B | 6.597(3) | 5.489(3), 5.865(3) | 1.67 | 37.51(5) | 30.41(10) | 3.226 |
| L2Ni2-A | 5.261(12) | 5.078(3), 5.151(3) | 0.49 | 7.60(16) | 12.64(12) | 0.705 |
| L2Ni2-B | 5.3048(17) | 5.0983(17), 5.0538(17) | 0.48 | 6.38(5), 6.27(4) | 23.21(9), 16.41(9) | 0.221 |
| L2Ni2Nag | 5.319(4) | 5.075(4), 5.077(4) | 0.25 | 4.28(13), 5.86(13) | 9.8(3), 7.6(3) | 0.153 |
| H4L1 [ref. 9 and 10] | 6.354(2) | 5.270(2), 5.956(2) | 1.88 | 38.12(3), 75.28(4) | 72.91(5) | 4.624 |
| L1Ni2 [ref. 9 and 10] | 5.238(4) | 5.167(4), 5.193(4) | 0.80 | 29.29(11), 15.34(16) | 42.24(13) | 0.027 |
| L1′Ni2Na-A [ref. 11]h | 5.091(5) | 5.070(5), 5.205(5) | 0.82 | 25.41(11), 21.76(12) | 44.46(10) | 0.115 |
| L1′Ni2Na-B [ref. 11]h | 5.072(5) | 5.189(5), 5.079(5) | 0.85 | 22.60(13), 26.00(11) | 45.66(10) | 0.125 |
As already mentioned, the metal-free macrocycles, H4L2-A and H4L2-B, have a non-planar conformation in which the two xanthene planes are bent at an angle θa of 37–39 deg with respect to the O6 mean plane. The difference in the bending orientations of the two xanthene planes resulted in two types of conformations, i.e., V-shaped (H4L2-A) and step-shaped (H4L2-B). In addition, each xanthene moiety was also bent at the angle θb of about 27–30 deg. This bending makes the molecular conformation far from planar, with the average deviation ddev of 1.36 and 1.67 Å for H4L2-A and H4L2-B, respectively.
It was clear that the conversion of H4L2 into L2Ni2 by introducing two Ni2+ ions improved the overall planarity of the macrocyclic molecule; both molecules, L2Ni2-A and L2Ni2-B, showed the average deviations ddev of 0.48–0.49, which are much smaller than those of H4L2. The nickel(II) complex, L2Ni2, also had bent angles θa (6.3–7.6 deg) and θb (12–23 deg) that are significantly smaller than those of H4L2. This planarization also changed the arrangement of the six oxygen atoms; in particular, the diagonal distance between the two xanthene oxygen atoms, dOO(X), was shortened from 6.6 Å to 5.3 Å upon the conversion of H4L2 to L2Ni2. As a result, all the diagonal O⋯O distances within the O6 binding site became almost similar (dOO(P) of 5.05–5.15 Å), approximately making a regular hexagon, which is also evident from the significant decrease in the CShM values (from 3.2–3.5 to 0.2–0.7).
The incorporation of Na+ ion into L2Ni2 further improved the planarity of the macrocycle. The deviation ddev of [L2Ni2Na(DMSO)2](OTf) was 0.25, which was approximately half that for L2Ni2 (ddev = 0.48–0.49). The bent angles θb became smaller (7.6–9.8 deg), which are also smaller than those of L2Ni2. Therefore, the planarity of this host H4L2 was clearly improved in two steps by introducing two different kinds of metals, Ni2+ and Na+. Considering the molecular curvature found in the DFT calculated structures, the crystal packing may also contribute to the observed highly-planar structures of L2Ni2 and L2Ni2Na.
While there is a noticeable difference in the conformational planarity, the geometrical features of the O6 sites of L2Ni2 and L2Ni2Na are quite similar. Whereas the CShM value for L2Ni2Na was slightly smaller than that for L2Ni2, it was particularly noteworthy that there is almost no difference in the diagonal O⋯O distances, dOO(X) and dOO(P), between the inclusion complex L2Ni2Na and the guest-free L2Ni2 macrocycle, indicating that Na+ binding occurs almost without significant deformation of the host framework of L2Ni2. This was also demonstrated from the viewpoint of the deformation energy in the computational investigations as already discussed. Thus, the L2Ni2 metallohost has a well preorganized binding site that is particularly suitable for Na+ binding.
A similar preorganization effect of the O6 binding site was observed for the corresponding diaryl ether analogues, H4L1, L1Ni2,9,10 and L1′Ni2Na.11 However, the xanthene analogues presented here generally exhibit greater planarity than these diaryl ether analogues, particularly in the case of the metal-free H4L2. This enhanced planarity contributes to its stronger binding to Na+ (Ka = 182 M−1; Fig. S17†) compared to H4L1 (Ka = 13 M−1),9 owing to its well-preorganized binding site. Moreover, the xanthene analogues showed a more pronounced increase in planarity upon stepwise binding with Ni2+ and Na+, demonstrating the advantage of employing the xanthene motif to construct metal-containing planar structures.
:
1 → 4
:
1) to obtain MOM ether 2 (11.7 g, 35.3 mmol, 98%) as a pale yellow oil; 1H NMR (400 MHz, CDCl3) δ 1.62 (s, 6H), 3.57 (s, 6H), 5.30 (s, 4H), 7.00 (t, J = 7.8 Hz, 2H), 7.04 (dd, J = 7.8, 1.9 Hz, 2H), 7.09 (dd, J = 7.8, 1.9 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 31.81, 34.46, 56.30, 96.10, 115.78, 119.35, 122.77, 131.61, 141.49, 145.12. Anal. calcd for C19H22O5: C, 69.07; H, 6.71. Found: C, 68.76; H, 6.69.
:
1 → 4
:
1) to obtain dialdehyde 3 (0.692 g, 1.79 mmol, 60%) as pale yellow crystals; 1H NMR (400 MHz, CDCl3) δ 1.67 (s, 6H), 3.64 (s, 6H), 5.41 (s, 4H), 7.29 (dd, J = 8.4, 0.7 Hz, 2H), 7.62 (d, J = 8.4 Hz, 2H), 10.44 (d, J = 0.7 Hz, 2H); 13C NMR (100 MHz, CDCl3) δ 31.36, 35.65, 58.20, 100.08, 121.38, 122.27, 128.97, 137.33, 143.02, 147.96, 189.40. Anal. calcd for C21H22O7: C, 65.28; H, 5.74. Found: C, 65.01; H, 5.75.
:
1, 48 mL) and the mixture was stirred overnight at rt. After the addition of water, the mixture was extracted with chloroform, and the combined organic layer was dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure to a minimal volume. The addition of hexane to the resultant solution produced precipitates, which were collected on a filter to yield 4 (1.62 g, 5.43 mmol, 93%) as yellow crystals; 1H NMR (400 MHz, CDCl3) δ 1.67 (s, 6H), 7.06 (d, J = 8.4 Hz, 2H), 7.33 (d, J = 8.4 Hz, 2H), 9.91 (s, 2H), 11.21 (s, 2H); 13C NMR (100 MHz, CDCl3) δ 31.38, 35.62, 116.34, 119.52, 126.87, 136.81, 138.56, 150.33, 195.77. Anal. calcd for C17H14O5·0.4H2O: C, 66.84; H, 4.88. Found: C, 66.86; H, 4.70.
:
1, 4 mL) was mixed with a solution of nickel(II) acetate tetrahydrate (21.1 mg, 84.8 μmol) in methanol (1.5 mL). After stirring for 6 h at rt, the resultant precipitates were collected on a filter to yield L2Ni2 (14.6 mg, 15.9 μmol, 56%) as brown crystals; 1H NMR (400 MHz, DMSO-d6) δ 1.61 (s, 12H), 6.88 (d, J = 8.6 Hz, 4H), 7.33–7.38 (m, 4H), 7.40 (d, J = 8.6 Hz, 4H), 8.15–8.19 (m, 4H), 8.85 (s, 4H). Anal. calcd for C46H32N4O6Ni2·3.5H2O: C, 60.24; H, 4.29, N, 6.11. Found: C, 60.26; H, 4.14, N, 6.16.
| H4L2·0.5CHCl3·2.5MeCN | L2Ni2·0.67H2O·0.67MeOH·1.33DMSO | [L2Ni2Na(DMSO)2](OTf)·DMSO | |
|---|---|---|---|
| Formula | C51.5H44Cl1.5N6.5O6 | C49.33H44N4Ni2O8.67S1.33 | C53H50F3N4NaNi2O12S4 |
| a R 1 = ∑||Fo| − |Fc||/|Fo|; wR2 = {∑w(Fo2 − Fc2)2/∑[w(Fo2)2]}1/2. | |||
| Formula weight | 903.10 | 991.72 | 1260.62 |
| Crystal system | Monoclinic | Monoclinic | Monoclinic |
| Space group | P21/m | P21/n | Pn |
| a (Å) | 10.9940(14) | 16.3754(5) | 10.7194(4) |
| b (Å) | 23.218(3) | 21.6479(6) | 9.1083(3) |
| c (Å) | 17.421(3) | 19.6275(6) | 26.4196(9) |
| α (°) | 90 | 90 | 90 |
| β (°) | 99.151(4) | 111.4120(10) | 99.796(2) |
| γ (°) | 90 | 90 | 90 |
| V (Å3) | 4390.2(10) | 6477.6(3) | 2541.88(15) |
| Z | 4 | 6 | 2 |
| D calcd (g cm−3) | 1.366 | 1.525 | 1.647 |
| μ (mm−1) | 0.178 | 2.217 | 3.239 |
| Collected/unique reflections | 41 360/7892 |
49 196/11 574 |
19 130/7753 |
| 2θmax | 50.00 | 134.24 | 136.73 |
| R int | 0.0460 | 0.0271 | 0.0484 |
| Limiting indices | −13 ≤ h ≤ 12 | −19 ≤ h ≤ 19 | −12 ≤ h ≤ 12 |
| −27 ≤ k ≤ 27 | −23 ≤ k ≤ 25 | −10 ≤ k ≤ 10 | |
| −20 ≤ l ≤ 19 | −23 ≤ l ≤ 23 | −31 ≤ l ≤ 30 | |
| Parameters/restraints | 660/53 | 1044/277 | 796/136 |
| GOF (F2) | 1.078 | 1.014 | 1.006 |
| R 1 (I > 2σ(I))a | 0.0647 | 0.0334 | 0.0363 |
| R 1 (all data)a | 0.0749 | 0.0384 | 0.0472 |
| wR2 (I > 2σ(I))a | 0.1650 | 0.0854 | 0.0735 |
| wR2 (all data)a | 0.1804 | 0.0886 | 0.0777 |
| CCDC No. | 2448855 | 2448856 | 2448857 |
Footnotes |
| † Electronic supplementary information (ESI) available. CCDC 2448855–2448857. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d5dt01183c |
| ‡ H2saloph = N,N′-disalicylidene-o-phenylenediamine. |
| This journal is © The Royal Society of Chemistry 2025 |