High-throughput AFM analysis reveals unwrapping pathways of H3 and CENP-A nucleosomes

Sebastian F. Konrad, Willem Vanderlinden, Wout Frederickx, Tine Brouns, Björn H. Menze, Steven De Feyter and Jan Lipfert

Nanoscale, 2021, 13, 5435
DOI: 10.1039/D0NR08564B

The free energy landscape of retroviral integration

Willem Vanderlinden, Tine Brouns, Philipp U. Walker, Pauline J. Kolbeck, Lukas F. Milles, Wolfgang Ott, Philipp C. Nickels, Zeger Debyser and Jan Lipfert

Nat Commun, 2019, 10
DOI: 10.1038/s41467-019-12649-w

Anti-DFS70 antibodies: an update on our current understanding and their clinical usefulness

Michael Mahler, Luis E. Andrade, Carlos A. Casiano, Kishore Malyavantham and Marvin J. Fritzler

Expert Review of Clinical Immunology, 2019, 15, 241
DOI: 10.1080/1744666X.2019.1562903

Evolution of AF6-RAS association and its implications in mixed-lineage leukemia

Matthew J. Smith, Elizabeth Ottoni, Noboru Ishiyama, Marilyn Goudreault, André Haman, Claus Meyer, Monika Tucholska, Genevieve Gasmi-Seabrook, Serena Menezes, Rob C. Laister, Mark D. Minden, Rolf Marschalek, Anne-Claude Gingras, Trang Hoang and Mitsuhiko Ikura

Nat Commun, 2017, 8
DOI: 10.1038/s41467-017-01326-5

High-yield ligation-free assembly of DNA constructs with nucleosome positioning sequence repeats for single-molecule manipulation assays

Yi-Yun Lin, Tine Brouns, Pauline J. Kolbeck, Willem Vanderlinden and Jan Lipfert

Journal of Biological Chemistry, 2023, 299, 104874
DOI: 10.1016/j.jbc.2023.104874

Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA

Stefanos K. Nomidis, Franziska Kriegel, Willem Vanderlinden, Jan Lipfert and Enrico Carlon

Phys. Rev. Lett., 2017, 118
DOI: 10.1103/PhysRevLett.118.217801

Orthogonal Probing of Single-Molecule Heterogeneity by Correlative Fluorescence and Force Microscopy

Wout Frederickx, Susana Rocha, Yasuhiko Fujita, Koen Kennes, Herlinde De Keersmaecker, Steven De Feyter, Hiroshi Uji-i and Willem Vanderlinden

ACS Nano, 2018, 12, 168
DOI: 10.1021/acsnano.7b05405

DNA Origami Fiducial for Accurate 3D Atomic Force Microscopy Imaging

Pauline J. Kolbeck, Mihir Dass, Irina V. Martynenko, Relinde J. A. van Dijk-Moes, Kelly J. H. Brouwer, Alfons van Blaaderen, Willem Vanderlinden, Tim Liedl and Jan Lipfert

Nano Lett., 2023, 23, 1236
DOI: 10.1021/acs.nanolett.2c04299

DNA G-segment bending is not the sole determinant of topology simplification by type II DNA topoisomerases

Neil H. Thomson, Sergio Santos, Lesley A. Mitchenall, Tanya Stuchinskaya, James A. Taylor and Anthony Maxwell

Sci Rep, 2014, 4
DOI: 10.1038/srep06158

Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif

Petr Tesina, Kateřina Čermáková, Magdalena Hořejší, Kateřina Procházková, Milan Fábry, Subhalakshmi Sharma, Frauke Christ, Jonas Demeulemeester, Zeger Debyser, Jan De Rijck, Václav Veverka and Pavlína Řezáčová

Nat Commun, 2015, 6
DOI: 10.1038/ncomms8968

The dynamic interplay between DNA topoisomerases and DNA topology

Yeonee Seol and Keir C. Neuman

Biophys Rev, 2016, 8, 101
DOI: 10.1007/s12551-016-0240-8

Molecular Mechanism of LEDGF/p75 Dimerization

Vanda Lux, Tine Brouns, Kateřina Čermáková, Pavel Srb, Milan Fábry, Marcela Mádlíková, Magdalena Hořejší, Zdeněk Kukačka, Petr Novák, Michael Kugler, Jiří Brynda, Jan DeRijck, Frauke Christ, Zeger Debyser and Václav Veverka

Structure, 2020, 28, 1288
DOI: 10.1016/j.str.2020.08.012

The Impact of Lens Epithelium-Derived Growth Factor p75 Dimerization on Its Tethering Function

Tine Brouns, Vanda Lux, Siska Van Belle, Frauke Christ, Václav Veverka and Zeger Debyser

Cells, 2024, 13, 227
DOI: 10.3390/cells13030227

Specific Coordination Mode and Electrostatic Ion Atmosphere Effects of Divalent Cations Regulating Spatially Crossing Configurations of DNA Duplexes

Hiroshi Nishigami, Jiyoung Kang, Kazuhiko Yamasaki and Masaru Tateno

J. Phys. Soc. Jpn., 2019, 88, 044801
DOI: 10.7566/JPSJ.88.044801

Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments

Pauline J Kolbeck, Miloš Tišma, Brian T Analikwu, Willem Vanderlinden, Cees Dekker and Jan Lipfert

Nucleic Acids Research, 2024, 52, 59
DOI: 10.1093/nar/gkad1055

von Willebrand factor is dimerized by protein disulfide isomerase

Svenja Lippok, Katra Kolšek, Achim Löf, Dennis Eggert, Willem Vanderlinden, Jochen P. Müller, Gesa König, Tobias Obser, Karoline Röhrs, Sonja Schneppenheim, Ulrich Budde, Carsten Baldauf, Camilo Aponte-Santamaría, Frauke Gräter, Reinhard Schneppenheim, Joachim O. Rädler and Maria A. Brehm

Blood, 2016, 127, 1183
DOI: 10.1182/blood-2015-04-641902

Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy

Tine Brouns, Herlinde De Keersmaecker, Sebastian F. Konrad, Noriyuki Kodera, Toshio Ando, Jan Lipfert, Steven De Feyter and Willem Vanderlinden

ACS Nano, 2018, 12, 11907
DOI: 10.1021/acsnano.8b06994

The dynamic interplay between DNA topoisomerases and DNA topology

Yeonee Seol and Keir C. Neuman

Biophys Rev, 2016, 8, 221
DOI: 10.1007/s12551-016-0206-x