Osmotic stress and pore nucleation in charged biological nanoshells and capsids

Thiago Colla, Amin Bakhshandeh and Yan Levin

Soft Matter, 2020, 16, 2390
DOI: 10.1039/C9SM02532D

More than just a barrier: using physical models to couple membrane shape to cell function

Felix Frey and Timon Idema

Soft Matter, 2021, 17, 3533
DOI: 10.1039/D0SM01758B

Membrane-mediated aggregation of anisotropically curved nanoparticles

Alexander D. Olinger, Eric J. Spangler, P. B. Sunil Kumar and Mohamed Laradji

Faraday Discuss., 2016, 186, 265
DOI: 10.1039/C5FD00144G

Rheology and simulation of 2-dimensional clathrin protein network assembly

Jules J. VanDersarl, Shafigh Mehraeen, Alia P. Schoen, Sarah C. Heilshorn, Andrew J. Spakowitz and Nicholas A. Melosh

Soft Matter, 2014, 10, 6219
DOI: 10.1039/C4SM00025K

Competing pathways for the invagination of clathrin-coated membranes

Felix Frey and Ulrich S. Schwarz

Soft Matter, 2020, 16, 10723
DOI: 10.1039/D0SM01375G

Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction–Diffusion Algorithm

Margaret E. Johnson

J. Phys. Chem. B, 2018, 122, 11771
DOI: 10.1021/acs.jpcb.8b08339

Membrane Fluctuations Destabilize Clathrin Protein Lattice Order

Nicholas Cordella, Thomas J. Lampo, Shafigh Mehraeen and Andrew J. Spakowitz

Biophysical Journal, 2014, 106, 1476
DOI: 10.1016/j.bpj.2013.11.4505

The role of multivalency in the association kinetics of patchy particle complexes

Arthur C. Newton, Jan Groenewold, Willem K. Kegel and Peter G. Bolhuis

The Journal of Chemical Physics, 2017, 146
DOI: 10.1063/1.4984966

Eden growth models for flat clathrin lattices with vacancies

Felix Frey, Delia Bucher, Kem A Sochacki, Justin W Taraska, Steeve Boulant and Ulrich S Schwarz

New J. Phys., 2020, 22, 073043
DOI: 10.1088/1367-2630/ab99e1

Aggregation of nanoparticles on one and two-component bilayer membranes

David L. Cheung

The Journal of Chemical Physics, 2014, 141
DOI: 10.1063/1.4901740

Why Enveloped Viruses Need Cores—The Contribution of a Nucleocapsid Core to Viral Budding

Guillermo R. Lázaro, Suchetana Mukhopadhyay and Michael F. Hagan

Biophysical Journal, 2018, 114, 619
DOI: 10.1016/j.bpj.2017.11.3782

Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane

Richard Matthews and Christos N. Likos

J. Phys. Chem. B, 2013, 117, 8283
DOI: 10.1021/jp4037099

Rule-based modelling provides an extendable framework for comparing candidate mechanisms underpinning clathrin polymerisation

Anatoly Sorokin, Katharina F. Heil, J. Douglas Armstrong and Oksana Sorokina

Sci Rep, 2018, 8
DOI: 10.1038/s41598-018-23829-x

Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins

Si-Kao Guo, Alexander J. Sodt, Margaret E. Johnson and Peter M. Kasson

PLoS Comput Biol, 2022, 18, e1009969
DOI: 10.1371/journal.pcbi.1009969

Quantitative computational models of molecular self-assembly in systems biology

Marcus Thomas and Russell Schwartz

Phys. Biol., 2017, 14, 035003
DOI: 10.1088/1478-3975/aa6cdc

Early stages of clathrin aggregation at a membrane in coarse-grained simulations

M. Giani, W. K. den Otter and W. J. Briels

The Journal of Chemical Physics, 2017, 146
DOI: 10.1063/1.4979985

Molecular Simulation of Protein Encapsulation in Vesicle Formation

Bram van Hoof, Albert J. Markvoort, Rutger A. van Santen and Peter A. J. Hilbers

J. Phys. Chem. B, 2014, 118, 3346
DOI: 10.1021/jp410612k

Organizing membrane-curving proteins: the emerging dynamical picture

Mijo Simunovic, Patricia Bassereau and Gregory A Voth

Current Opinion in Structural Biology, 2018, 51, 99
DOI: 10.1016/j.sbi.2018.03.018

Simulations Show that Virus Assembly and Budding Are Facilitated by Membrane Microdomains

Teresa Ruiz-Herrero and Michael F. Hagan

Biophysical Journal, 2015, 108, 585
DOI: 10.1016/j.bpj.2014.12.017

An elementary singularity-free Rotational Brownian Dynamics algorithm for anisotropic particles

Ioana M. Ilie, Wim J. Briels and Wouter K. den Otter

The Journal of Chemical Physics, 2015, 142
DOI: 10.1063/1.4914322

Interplay between Nanoparticle Wrapping and Clustering of Inner Anchored Membrane Proteins

Tongtao Yue, Shixin Li, Yan Xu, Xianren Zhang and Fang Huang

J. Phys. Chem. B, 2016, 120, 11000
DOI: 10.1021/acs.jpcb.6b08667

Extracting lipid vesicles from plasma membranes via self-assembly of clathrin-inspired scaffolding nanoparticles

Ye Li, Xianren Zhang, Jinxing Lin, Ruili Li and Tongtao Yue

Colloids and Surfaces B: Biointerfaces, 2019, 176, 239
DOI: 10.1016/j.colsurfb.2019.01.008

Clathrin Assembly Regulated by Adaptor Proteins in Coarse-Grained Models

Matteo Giani, Wouter K. den Otter and Wim J. Briels

Biophysical Journal, 2016, 111, 222
DOI: 10.1016/j.bpj.2016.06.003

Rotational Brownian Dynamics simulations of clathrin cage formation

Ioana M. Ilie, Wouter K. den Otter and Wim J. Briels

The Journal of Chemical Physics, 2014, 141
DOI: 10.1063/1.4891306