Jin-jun Hou, Zi-jia Zhang, Wen-yong Wu, Qing-qing He, Teng-qian Zhang, Ya-wen Liu, Zhao-jun Wang, Lei Gao, Hua-li Long, Min Lei, Wan-ying Wu and De-an Guo

Acta Pharmacol Sin, 2022, 43, 3096
DOI: 10.1038/s41401-022-00990-8

Metabolomics in the natural products field – a gateway to novel antibiotics

Changsheng Wu, Hye Kyong Kim, Gilles P. van Wezel and Young Hae Choi

Drug Discovery Today: Technologies, 2015, 13, 11
DOI: 10.1016/j.ddtec.2015.01.004

High Spatial Resolution Imaging Mass Spectrometry Reveals Chemical Heterogeneity Across Bacterial Microcolonies

Rita de Cassia Pessotti, Bridget L. Hansen, Vineetha M. Zacharia, Daniel Polyakov and Matthew F. Traxler

Anal. Chem., 2019, 91, 14818
DOI: 10.1021/acs.analchem.9b03909

Full Issue PDF

Phytobiomes Journal, 2020, 4, 195
DOI: 10.1094/PBIOMES-4-3

Metabolomics, an Essential Tool in Exploring and Harnessing Microbial Chemical Ecology

Joshua Kellogg and Seogchan Kang

Phytobiomes Journal, 2020, 4, 195
DOI: 10.1094/PBIOMES-04-20-0032-RVW

An analysis of the sponge Acanthostrongylophora igens' microbiome yields an actinomycete that produces the natural product manzamine A

Amanda L. Waters, Olivier Peraud, Noer Kasanah, James W. Sims, Nuwan Kothalawala, Matthew A. Anderson, Samuel H. Abbas, Karumanchi V. Rao, Vijay R. Jupally, Michelle Kelly, Amala Dass, Russell T. Hill and Mark T. Hamann

Front. Mar. Sci., 2014, 1
DOI: 10.3389/fmars.2014.00054

Imaging mass spectrometry for metabolites: technical progress, multimodal imaging, and biological interactions

Ying‐Ning Ho, Lin‐Jie Shu and Yu‐Liang Yang

WIREs Mechanisms of Disease, 2017, 9
DOI: 10.1002/wsbm.1387

Hexacyclopeptides secreted by an endophytic fungus Fusarium solani N06 act as crosstalk molecules in Narcissus tazetta

Wen-Xuan Wang, Souvik Kusari, Selahaddin Sezgin, Marc Lamshöft, Parijat Kusari, Oliver Kayser and Michael Spiteller

Appl Microbiol Biotechnol, 2015, 99, 7651
DOI: 10.1007/s00253-015-6653-7

The Potential Biocontrol Agent Paenibacillus polymyxa TP3 Produces Fusaricidin-Type Compounds Involved in the Antagonism Against Gray Mold Pathogen Botrytis cinerea

Shuen-Huang Tsai, Yu-Ting Chen, Yu-Liang Yang, Bo-Yi Lee, Chien-Jui Huang and Chao-Ying Chen

Phytopathology®, 2022, 112, 775
DOI: 10.1094/PHYTO-04-21-0178-R

Mass spectrometry-based metabolomics in microbiome investigations

Anelize Bauermeister, Helena Mannochio-Russo, Letícia V. Costa-Lotufo, Alan K. Jarmusch and Pieter C. Dorrestein

Nat Rev Microbiol, 2022, 20, 143
DOI: 10.1038/s41579-021-00621-9

Quorum Sensing Is a Language of Chemical Signals and Plays an Ecological Role in Algal-Bacterial Interactions

Jin Zhou, Yihua Lyu, Mindy L. Richlen, Donald M. Anderson and Zhonghua Cai

Critical Reviews in Plant Sciences, 2016, 35, 81
DOI: 10.1080/07352689.2016.1172461

A Microplate Reader-Based System for Visualizing Transcriptional Activity During in vivo Microbial Interactions in Space and Time

Rosanna C. Hennessy, Peter Stougaard and Stefan Olsson

Sci Rep, 2017, 7
DOI: 10.1038/s41598-017-00296-4

Insights into human respiratory microbiome under dysbiosis and its analysis tool

Mehfooz Helal and Vinay Kumar Bari

Front. Microbiomes, 2025, 4
DOI: 10.3389/frmbi.2025.1549166

Current approaches and challenges for the metabolite profiling of complex natural extracts

Jean-Luc Wolfender, Guillaume Marti, Aurélien Thomas and Samuel Bertrand

Journal of Chromatography A, 2015, 1382, 136
DOI: 10.1016/j.chroma.2014.10.091

Vitroprocines, new antibiotics against Acinetobacter baumannii, discovered from marine Vibrio sp. QWI-06 using mass-spectrometry-based metabolomics approach

Chih-Chuang Liaw, Pei-Chin Chen, Chao-Jen Shih, Sung-Pin Tseng, Ying-Mi Lai, Chi-Hsin Hsu, Pieter C. Dorrestein and Yu-Liang Yang

Sci Rep, 2015, 5
DOI: 10.1038/srep12856

Homogeneous Matrix Deposition on Dried Agar for MALDI Imaging Mass Spectrometry of Microbial Cultures

Thomas Hoffmann and Pieter C. Dorrestein

J. Am. Soc. Mass Spectrom., 2015, 26, 1959
DOI: 10.1007/s13361-015-1241-8

Modeling Microbial Community Networks: Methods and Tools for Studying Microbial Interactions

Shanchana Srinivasan, Apoorva Jnana and Thokur Sreepathy Murali

Microb Ecol, 2024, 87
DOI: 10.1007/s00248-024-02370-7

Characterization of microbial mixtures by mass spectrometry

Todd R. Sandrin and Plamen A. Demirev

Mass Spectrometry Reviews, 2018, 37, 321
DOI: 10.1002/mas.21534

Mass spectrometry imaging: An emerging technology for the analysis of metabolites in insects

Fei‐Ying Yang, Jun‐Hui Chen, Qian‐Qian Ruan, Hafiz S. A. Saqib, Wei‐Yi He and Min‐Sheng You

Arch Insect Biochem Physiol, 2020, 103
DOI: 10.1002/arch.21643

Constant-Distance Mode Nanospray Desorption Electrospray Ionization Mass Spectrometry Imaging of Biological Samples with Complex Topography

Son N. Nguyen, Andrey V. Liyu, Rosalie K. Chu, Christopher R. Anderton and Julia Laskin

Anal. Chem., 2017, 89, 1131
DOI: 10.1021/acs.analchem.6b03293

Coculture of Marine Invertebrate-Associated Bacteria and Interdisciplinary Technologies Enable Biosynthesis and Discovery of a New Antibiotic, Keyicin

Navid Adnani, Marc G. Chevrette, Srikar N. Adibhatla, Fan Zhang, Qing Yu, Doug R. Braun, Justin Nelson, Scott W. Simpkins, Bradon R. McDonald, Chad L. Myers, Jeff S. Piotrowski, Christopher J. Thompson, Cameron R. Currie, Lingjun Li, Scott R. Rajski and Tim S. Bugni

ACS Chem. Biol., 2017, 12, 3093
DOI: 10.1021/acschembio.7b00688

Secondary metabolism in Trichoderma – Chemistry meets genomics

Susanne Zeilinger, Sabine Gruber, Ravindra Bansal and Prasun K. Mukherjee

Fungal Biology Reviews, 2016, 30, 74
DOI: 10.1016/j.fbr.2016.05.001

Constraint-based metabolic modelling of marine microbes and communities

Marco Fondi and Renato Fani

Marine Genomics, 2017, 34, 1
DOI: 10.1016/j.margen.2017.06.003

A comparative ToF-SIMS and GC–MS analysis of phototrophic communities collected from an alkaline silica-depositing hot spring

S. Siljeström, M.N. Parenteau, L.L. Jahnke and S.L. Cady

Organic Geochemistry, 2017, 109, 14
DOI: 10.1016/j.orggeochem.2017.03.009

Ambient Mass Spectrometry Imaging Using Direct Liquid Extraction Techniques

Julia Laskin and Ingela Lanekoff

Anal. Chem., 2016, 88, 52
DOI: 10.1021/acs.analchem.5b04188

Homospermidine Lipids: A Compound Class Specifically Formed during Fruiting Body Formation of Myxococcus xanthus DK1622

Michael Hoffmann, David Auerbach, Fabian Panter, Thomas Hoffmann, Pieter C. Dorrestein and Rolf Müller

ACS Chem. Biol., 2018, 13, 273
DOI: 10.1021/acschembio.7b00816

Understanding Interaction Patterns within Deep-Sea Microbial Communities and Their Potential Applications

Muhammad Zohaib Nawaz, Raghul Subin Sasidharan, Huda Ahmed Alghamdi and Hongyue Dang

Marine Drugs, 2022, 20, 108
DOI: 10.3390/md20020108

Mass spectrometry characterization of endophytic bacterium Curtobacterium sp. strain ER1/6 isolated from Citrus sinensis

Francisca Diana da Silva Araújo, Daiene Souza Santos, Carolina Clepf Pagotto, Welington Luiz de Araújo and Marcos Nogueira Eberlin

J Mass Spectrom, 2018, 53, 91
DOI: 10.1002/jms.4042