A split intein T7 RNA polymerase for transcriptional AND-logic

Yolanda Schaerli, Magüi Gili and Mark Isalan

Nucleic Acids Research, 2014, 42, 12322
DOI: 10.1093/nar/gku884

Engineering of Thiamine Pyrophosphate Fluorescent Biosensors Based on Ribozyme Switches in Mammalian Cells

Yuan-Yuan ZHANG, Hui CHENG, Yan SUN, Jin-E WANG, Zheng-Yan WU and Ren-Jun PEI

Chinese Journal of Analytical Chemistry, 2017, 45, 157
DOI: 10.1016/S1872-2040(16)60992-1

Using RNA as Molecular Code for Programming Cellular Function

Manish Kushwaha, William Rostain, Satya Prakash, John N. Duncan and Alfonso Jaramillo

ACS Synth. Biol., 2016, 5, 795
DOI: 10.1021/acssynbio.5b00297

Engineering and In Vivo Applications of Riboswitches

Zachary F. Hallberg, Yichi Su, Rebekah Z. Kitto and Ming C. Hammond

Annu. Rev. Biochem., 2017, 86, 515
DOI: 10.1146/annurev-biochem-060815-014628

Protein and RNA engineering to customize microbial molecular reporting

Joseph A. Gredell, Christopher S. Frei and Patrick C. Cirino

Biotechnology Journal, 2012, 7, 477
DOI: 10.1002/biot.201100266

Synthetic Riboswitches: From Plug and Pray toward Plug and Play

Maja Etzel and Mario Mörl

Biochemistry, 2017, 56, 1181
DOI: 10.1021/acs.biochem.6b01218

A three-step framework for programming pattern formation

Natalie S. Scholes and Mark Isalan

Current Opinion in Chemical Biology, 2017, 40, 1
DOI: 10.1016/j.cbpa.2017.04.008

Synthetic small RNAs: Current status, challenges, and opportunities

Shreya Patel, Happy Panchasara, Darren Braddick, Nisarg Gohil and Vijai Singh

J of Cellular Biochemistry, 2018, 119, 9619
DOI: 10.1002/jcb.27252

Multistrand Structure Prediction of Nucleic Acid Assemblies and Design of RNA Switches

Eckart Bindewald, Kirill A. Afonin, Mathias Viard, Paul Zakrevsky, Taejin Kim and Bruce A. Shapiro

Nano Lett., 2016, 16, 1726
DOI: 10.1021/acs.nanolett.5b04651

Synthetic biology with RNA: progress report

Yaakov Benenson

Current Opinion in Chemical Biology, 2012, 16, 278
DOI: 10.1016/j.cbpa.2012.05.192

Customizing cellular signal processing by synthetic multi-level regulatory circuits

Yuanli Gao, Lei Wang and Baojun Wang

Nat Commun, 2023, 14
DOI: 10.1038/s41467-023-44256-1

A unified design space of synthetic stripe-forming networks

Yolanda Schaerli, Andreea Munteanu, Magüi Gili, James Cotterell, James Sharpe and Mark Isalan

Nat Commun, 2014, 5
DOI: 10.1038/ncomms5905

Using Synthetic Biology to Engineer Spatial Patterns

Javier Santos‐Moreno and Yolanda Schaerli

Adv. Biosys., 2019, 3
DOI: 10.1002/adbi.201800280

Regulatory RNAs

Jorge Vazquez-Anderson and Lydia M Contreras

RNA Biology, 2013, 10, 1778
DOI: 10.4161/rna.27102

RNA aptamers as genetic control devices: The potential of riboswitches as synthetic elements for regulating gene expression

Christian Berens, Florian Groher and Beatrix Suess

Biotechnology Journal, 2015, 10, 246
DOI: 10.1002/biot.201300498

Exploiting natural chemical photosensitivity of anhydrotetracycline and tetracycline for dynamic and setpoint chemo-optogenetic control

Armin Baumschlager, Marc Rullan and Mustafa Khammash

Nat Commun, 2020, 11
DOI: 10.1038/s41467-020-17677-5

Prosthetic gene networks as an alternative to standard pharmacotherapies for metabolic disorders

Boon Chin Heng, Dominique Aubel and Martin Fussenegger

Current Opinion in Biotechnology, 2015, 35, 37
DOI: 10.1016/j.copbio.2015.01.010

Synthetic RNA switches as a tool for temporal and spatial control over gene expression

Andrew L Chang, Joshua J Wolf and Christina D Smolke

Current Opinion in Biotechnology, 2012, 23, 679
DOI: 10.1016/j.copbio.2012.01.005

Enzymatic Probing Analysis of an Engineered Riboswitch Reveals Multiple off Conformations

Norihito Muranaka, Vandana Sharma and Yohei Yokobayashi

Nucleosides, Nucleotides and Nucleic Acids, 2011, 30, 696
DOI: 10.1080/15257770.2011.597367

Prospects for Riboswitch Discovery and Analysis

Ronald R. Breaker

Molecular Cell, 2011, 43, 867
DOI: 10.1016/j.molcel.2011.08.024

RNA-based gene circuits for cell regulation

Peter KARAGIANNIS, Yoshihiko FUJITA and Hirohide SAITO

Proceedings of the Japan Academy. Ser. B: Physical and Biological Sciences, 2016, 92, 412
DOI: 10.2183/pjab.92.412

Riboswitches, from cognition to transformation

Jingdong Xu, Junyuan Hou, Mengnan Ding, Zhiwen Wang and Tao Chen

Synthetic and Systems Biotechnology, 2023, 8, 357
DOI: 10.1016/j.synbio.2023.05.008

Designing Synthetic Flexible Gene Regulation Networks Using RNA Devices in Cyanobacteria

Akiyoshi Higo, Atsuko Isu, Yuki Fukaya and Toru Hisabori

ACS Synth. Biol., 2017, 6, 55
DOI: 10.1021/acssynbio.6b00201

Elimination of editing plasmid mediated by theophylline riboswitch in Zymomonas mobilis

Yuhuan Huang, Mao Chen, Guoquan Hu, Bo Wu and Mingxiong He

Appl Microbiol Biotechnol, 2023, 107, 7151
DOI: 10.1007/s00253-023-12783-y