DNA binding fluorescent proteins as single-molecule probes

Xuelin Jin, Natalia Diyah Hapsari, Seonghyun Lee and Kyubong Jo

Analyst, 2020, 145, 4079
DOI: 10.1039/D0AN00218F

21 Fluorescent Protein-Based DNA Staining Dyes

Yurie Tehee Kim, Hyesoo Oh, Myung Jun Seo, Dong Hyeun Lee, Jieun Shin, Serang Bong, Sujeong Heo, Natalia Diyah Hapsari and Kyubong Jo

Molecules, 2022, 27, 5248
DOI: 10.3390/molecules27165248

High‐throughput single‐molecule imaging system using nanofabricated trenches and fluorescent DNA‐binding proteins

Yujin Kang, Na Young Cheon, Jongjin Cha, Ayoung Kim, Hyung‐il Kim, Luda Lee, Kang O. Kim, Kyubong Jo and Ja Yil Lee

Biotech & Bioengineering, 2020, 117, 1640
DOI: 10.1002/bit.27331

Counting DNA molecules on a microchannel surface for quantitative analysis

Taesoo Kim, Siwon Kim, Chanyoung Noh, Hyeseung Hwang, Jieun Shin, Nabin Won, Seonghyun Lee, Dogeun Kim, Yoonha Jang, Su-Jin Hong, Jungyul Park, Sung Jae Kim, Seongsoo Jang, Kwang-Il Lim and Kyubong Jo

Talanta, 2023, 252, 123826
DOI: 10.1016/j.talanta.2022.123826

Scanning Electron Microscopy Imaging of Large DNA Molecules Using a Metal‐Free Electro‐Stain Composed of DNA‐Binding Proteins and Synthetic Polymers

Chanyoung Noh, Yoonjung Kang, Sujung Heo, Taesoo Kim, Hayeon Kim, Junhyuck Chang, Priyannth Ramasami Sundharbaabu, Sanghee Shim, Kwang‐il Lim, Jung Heon Lee and Kyubong Jo

Advanced Science, 2024, 11
DOI: 10.1002/advs.202309702

Fluorescent properties and photostability of streptavidin‐conjugated StayGOLD protein for DNA labeling

Yurie Tehee Kim, Joohee Choe and Kyubong Jo

Bulletin Korean Chem Soc, 2025, 46, 293
DOI: 10.1002/bkcs.12941

Truncated TALE-FP as DNA Staining Dye in a High-salt Buffer

Eunji Shin, Woojung Kim, Seonghyun Lee, Jaeyoung Bae, Sanggil Kim, Wooseok Ko, Ho Seong Seo, Sangyong Lim, Hyun Soo Lee and Kyubong Jo

Sci Rep, 2019, 9
DOI: 10.1038/s41598-019-53722-0

AT-specific DNA visualization revisits the directionality of bacteriophage λ DNA ejection

Serang Bong, Chung Bin Park, Shin-Gyu Cho, Jaeyoung Bae, Natalia Diyah Hapsari, Xuelin Jin, Sujung Heo, Ji-eun Lee, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama, Kwang-Hwan Jung, Bong June Sung and Kyubong Jo

Nucleic Acids Research, 2023, 51, 5634
DOI: 10.1093/nar/gkad340

Artificial Intelligence‐Enhanced Analysis of Genomic DNA Visualized with Nanoparticle‐Tagged Peptides under Electron Microscopy

Priyannth Ramasami Sundharbaabu, Junhyuck Chang, Yunchul Kim, Youmin Shim, Byoungsang Lee, Chanyoung Noh, Sujung Heo, Seung Seo Lee, Sang‐Hee Shim, Kwang‐il Lim, Kyubong Jo and Jung Heon Lee

Small, 2025, 21
DOI: 10.1002/smll.202405065

Twelve Colors of Streptavidin–Fluorescent Proteins (SA-FPs): A Versatile Tool to Visualize Genetic Information in Single-Molecule DNA

Yu Jin, Jaeyoung Bae, Tehee Yurie Kim, Hyeseung Hwang, Taesoo Kim, Myungheon Yu, Hyesoo Oh, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama and Kyubong Jo

Anal. Chem., 2022, 94, 16927
DOI: 10.1021/acs.analchem.2c04344

Rapid and Sensitive Detection of RNA Viruses through Imaging of Marker Molecules Derived from Designed Circular DNA Probes

Yoon‐ha Jang, Taesoo Kim, Su‐jin Hong, Se‐yeon Kim, Hyeseung Hwang, Siwon Kim, Su‐a Kang, Nabin Won, Dogeun Kim, Min Jae Kim, Yong Pil Chong, Seongsoo Jang, Kyubong Jo and Kwang‐il Lim

Small Methods, 2025, 9
DOI: 10.1002/smtd.202500182

Toward Visualizing Genomic DNA Using Electron Microscopy via DNA Metallization

Xuelin Jin, Shrute Kannappan, Natalia Diyah Hapsari, Yu Jin, Kyeong Kyu Kim, Jung Heon Lee and Kyubong Jo

Small Structures, 2023, 4
DOI: 10.1002/sstr.202200361

Nanochannel-Confined TAMRA-Polypyrrole Stained DNA Stretching by Varying the Ionic Strength from Micromolar to Millimolar Concentrations

Seonghyun Lee, Yelin Lee, Yongkyun Kim, Cong Wang, Jungyul Park, Gun Young Jung, Yenglong Chen, Rakwoo Chang, Shuji Ikeda, Hiroshi Sugiyama and Kyubong Jo

Polymers, 2018, 11, 15
DOI: 10.3390/polym11010015

A new fluorescence labeling method for molecular analysis of double-stranded DNA

Shunsuke Takahashi, Masahiko Oshige, Shinji Katsura and Yukitoshi Nagahara

Analytical Biochemistry, 2023, 662, 115000
DOI: 10.1016/j.ab.2022.115000

Origin of minicircular mitochondrial genomes in red algae

Yongsung Lee, Chung Hyun Cho, Chanyoung Noh, Ji Hyun Yang, Seung In Park, Yu Min Lee, John A. West, Debashish Bhattacharya, Kyubong Jo and Hwan Su Yoon

Nat Commun, 2023, 14
DOI: 10.1038/s41467-023-39084-2