Binding site profiles and N-terminal minor groove interactions of the master quorum-sensing regulator LuxR enable flexible control of gene activation and repression

Jun Zhang, Bing Liu, Dan Gu, Yuan Hao, Mo Chen, Yue Ma, Xiaohui Zhou, David Reverter, Yuanxing Zhang and Qiyao Wang

Nucleic Acids Research, 2021, 49, 3274
DOI: 10.1093/nar/gkab150

Non-canonical amino acid labeling in proteomics and biotechnology

Aya M. Saleh, Kristen M. Wilding, Sarah Calve, Bradley C. Bundy and Tamara L. Kinzer-Ursem

J Biol Eng, 2019, 13
DOI: 10.1186/s13036-019-0166-3

Pseudomonas aeruginosa dynamically prioritizes motility and resource recycling during prolonged starvation

Findlay D. Munro, Elize Ambulte, Claudia M. Hemsley, Megan Bergkessel and Soumya Kannan

mSystems, 2026, 11
DOI: 10.1128/msystems.01439-25

Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations inPseudomonas aeruginosaBiofilms

Brett M. Babin, Lydia Atangcho, Mark B. van Eldijk, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Tim Tolker-Nielsen, Dianne K. Newman, David A. Tirrell and Jon P. Boyle

mBio, 2017, 8
DOI: 10.1128/mBio.01593-17

Using click chemistry to study microbial ecology and evolution

Sander van Kasteren and Daniel E Rozen

ISME Communications, 2023, 3
DOI: 10.1038/s43705-022-00205-5

Interrogating marine virus‐host interactions and elemental transfer with BONCAT and nanoSIMS‐based methods

Alexis L. Pasulka, Kimberlee Thamatrakoln, Sebastian H. Kopf, Yunbin Guan, Bonnie Poulos, Annie Moradian, Michael J. Sweredoski, Sonja Hess, Mathew B. Sullivan, Kay D. Bidle and Victoria J. Orphan

Environmental Microbiology, 2018, 20, 671
DOI: 10.1111/1462-2920.13996

Quorum Sensing Gene Regulation by LuxR/HapR Master Regulators in Vibrios

Alyssa S. Ball, Ryan R. Chaparian, Julia C. van Kessel and William Margolin

J Bacteriol, 2017, 199
DOI: 10.1128/JB.00105-17

An Integrative Biology Approach to Quantify the Biodistribution of Azidohomoalanine In Vivo

Aya M. Saleh, Tyler G. VanDyk, Kathryn R. Jacobson, Shaheryar A. Khan, Sarah Calve and Tamara L. Kinzer-Ursem

Cel. Mol. Bioeng., 2023, 16, 99
DOI: 10.1007/s12195-023-00760-4

Cell-selective proteomics for biological discovery

Shannon E Stone, Weslee S Glenn, Graham D Hamblin and David A Tirrell

Current Opinion in Chemical Biology, 2017, 36, 50
DOI: 10.1016/j.cbpa.2016.12.026

Small RNA-Based Regulation of Bacterial Quorum Sensing and Biofilm Formation

Sine Lo Svenningsen, Gisela Storz and Kai Papenfort

Microbiol Spectr, 2018, 6
DOI: 10.1128/microbiolspec.RWR-0017-2018

Tagging and Enriching Proteins Enables Cell-Specific Proteomics

Thomas S. Elliott, Ambra Bianco, Fiona M. Townsley, Stephen D. Fried and Jason W. Chin

Cell Chemical Biology, 2016, 23, 805
DOI: 10.1016/j.chembiol.2016.05.018

Residue-Specific Incorporation of Noncanonical Amino Acids in Auxotrophic Hosts: Quo Vadis?

Žana Marin, Claudia Lacombe, Simindokht Rostami, Arshia Arasteh Kani, Andrea Borgonovo, Monika Cserjan-Puschmann, Jürgen Mairhofer, Gerald Striedner and Birgit Wiltschi

Chem. Rev., 2025, 125, 4840
DOI: 10.1021/acs.chemrev.4c00280

Time-Resolved Proteomic Analysis in Zebrafish Using Bioorthogonal Noncanonical Amino Acid Tagging

Sophie E. Miller, Ting-Yu Wang, Baiyi Quan, Tasha Cammidge, Tsui-Fen Chou, David A. Prober and David A. Tirrell

J. Proteome Res., 2026
DOI: 10.1021/acs.jproteome.5c00845

Amino Acid Analog Induces Stress Response in Marine Synechococcus

Dana E. Michels, Brett Lomenick, Tsui-Fen Chou, Michael J. Sweredoski, Alexis Pasulka and Maia Kivisaar

Appl Environ Microbiol, 2021, 87
DOI: 10.1128/AEM.00200-21

Next-generation physiology approaches to study microbiome function at single cell level

Roland Hatzenpichler, Viola Krukenberg, Rachel L. Spietz and Zackary J. Jay

Nat Rev Microbiol, 2020, 18, 241
DOI: 10.1038/s41579-020-0323-1

Modulation of quorum sensing, biofilm formation, and migration of Vibrio harveyi by curcumin-mediated photo/sonodynamic treatment

Dehua Wang, Fang Xu, Feng Zhou, Jiamiao Hu, Yi Zhang, Natthida Sriboonvorakul and Shaoling Lin

Journal of Future Foods, 2026, 6, 1184
DOI: 10.1016/j.jfutfo.2024.10.007

Testing antimicrobial peptides inhibiting protein synthesis in living E. coli and K. pneumoniae using bio-orthogonal non-canonical amino-acid tagging

Luigi de Pascale, Agnese D’Amore, Adriana Di Stasi, Martino Morici, Sabrina Pacor, Alessandro Tossi, Thuy Duong Pham, Attilio Fabbretti, Daniel N. Wilson, Mario Mardirossian and Marco Scocchi

Front. Microbiol., 2025, 16
DOI: 10.3389/fmicb.2025.1713216

Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis

Katherine F. Steward, Brian Eilers, Brian Tripet, Amanda Fuchs, Michael Dorle, Rachel Rawle, Berliza Soriano, Narayanaganesh Balasubramanian, Valérie Copié, Brian Bothner and Roland Hatzenpichler

Front. Microbiol., 2020, 11
DOI: 10.3389/fmicb.2020.00197

The quorum‐sensing systems of Vibrio campbellii DS40M4 and BB120 are genetically and functionally distinct

Chelsea A. Simpson, Blake D. Petersen, Nicholas W. Haas, Logan J. Geyman, Aimee H. Lee, Ram Podicheti, Robert Pepin, Laura C. Brown, Douglas B. Rusch, Michael P. Manzella, Kai Papenfort and Julia C. van Kessel

Environmental Microbiology, 2021, 23, 5412
DOI: 10.1111/1462-2920.15602

Integration host factor and LuxR synergistically bind DNA to coactivate quorum‐sensing genes in Vibrio harveyi

Ryan R. Chaparian, Stephen G. Olney, Christine M. Hustmyer, Dean A. Rowe‐Magnus and Julia C. van Kessel

Molecular Microbiology, 2016, 101, 823
DOI: 10.1111/mmi.13425