Allison N. Tran, Morgan Chandler, Justin Halman, Damian Beasock, Adam Fessler, Riley Q. McKeough, Phuong Anh Lam, Daniel P. Furr, Jian Wang, Edward Cedrone, Marina A. Dobrovolskaia, Nikolay V. Dokholyan, Susan R. Trammell and Kirill A. Afonin

Small, 2022, 18
DOI: 10.1002/smll.202104814

Digital Sensing and Molecular Computation by an Enzyme-Free DNA Circuit

William E. Arter, Yuriy Yusim, Quentin Peter, Christopher G. Taylor, David Klenerman, Ulrich F. Keyser and Tuomas P. J. Knowles

ACS Nano, 2020, 14, 5763
DOI: 10.1021/acsnano.0c00628

Flow-through colorimetric assay for detection of nucleic acids in plasma

Gopal Ammanath, Sanjida Yeasmin, Yuvasri Srinivasulu, Mukti Vats, Jamal Ahmed Cheema, Fairuz Nabilah, Rohit Srivastava, Umit Hakan Yildiz, Palaniappan Alagappan and Bo Liedberg

Analytica Chimica Acta, 2019, 1066, 102
DOI: 10.1016/j.aca.2019.03.036

ChemInform Abstract: A Survey of Advancements in Nucleic Acid‐Based Logic Gates and Computing for Applications in Biotechnology and Biomedicine

Cuichen Wu, Shuo Wan, Weijia Hou, Liqin Zhang, Jiehua Xu, Cheng Cui, Yanyue Wang, Jun Hu and Weihong Tan

ChemInform, 2015, 46
DOI: 10.1002/chin.201517333

Nanostructured luminescently labeled nucleic acids

Larry J. Kricka, Paolo Fortina and Jason Y. Park

Luminescence, 2017, 32, 132
DOI: 10.1002/bio.3170

Modular protein-oligonucleotide signal exchange

Deepak K Agrawal and Rebecca Schulman

Nucleic Acids Research, 2020, 48, 6431
DOI: 10.1093/nar/gkaa405

Real parallel and constant delay logic circuit design methodology based on the DNA model-of-computation

Z. Beiki, Z. Zare Dorabi and A. Jahanian

Microprocessors and Microsystems, 2018, 61, 217
DOI: 10.1016/j.micpro.2018.06.014

A Suite of Therapeutically-Inspired Nucleic Acid Logic Systems for Conditional Generation of Single-Stranded and Double-Stranded Oligonucleotides

Paul Zakrevsky, Eckart Bindewald, Hadley Humbertson, Mathias Viard, Nomongo Dorjsuren and Bruce A. Shapiro

Nanomaterials, 2019, 9, 615
DOI: 10.3390/nano9040615

Doping Dopamine in Carbon Nanoparticles: A New Multifunctional Logic-Based Decision-Making Molecule

Dipanjan Halder, Arabinda Mallick and Pradipta Purkayastha

Langmuir, 2019, 35, 10885
DOI: 10.1021/acs.langmuir.9b01646

Phase-shift-controlled logic gates in Y-shaped nonlinearly coupled chains

T. F. Assunção, E. M. Nascimento, A. S. B. Sombra and M. L. Lyra

Phys. Rev. E, 2016, 93
DOI: 10.1103/PhysRevE.93.022218

Multi‐threshold and multi‐input DNA logic design style for profiling the microRNA biomarkers of real cancers

Mercedeh Sanjabi and Ali Jahanian

IET Nanobiotechnology, 2019, 13, 665
DOI: 10.1049/iet-nbt.2018.5275

Protein–Protein Communication and Enzyme Activation Mediated by a Synthetic Chemical Transducer

Ronny Peri-Naor, Tal Ilani, Leila Motiei and David Margulies

J. Am. Chem. Soc., 2015, 137, 9507
DOI: 10.1021/jacs.5b01123

Nanowire Aptasensors for Electrochemical Detection of Cell-Secreted Cytokines

Ying Liu, Ali Rahimian, Sergiy Krylyuk, Tam Vu, Bruno Crulhas, Gulnaz Stybayeva, Meruyert Imanbekova, Dong-Sik Shin, Albert Davydov and Alexander Revzin

ACS Sens., 2017, 2, 1644
DOI: 10.1021/acssensors.7b00486

Terminal Deoxynucleotidyl Transferase in the Synthesis and Modification of Nucleic Acids

Ivo Sarac and Marcel Hollenstein

ChemBioChem, 2019, 20, 860
DOI: 10.1002/cbic.201800658

More Than a Light Switch: Engineering Unconventional Fluorescent Configurations for Biological Sensing

William J. Peveler and W. Russ Algar

ACS Chem. Biol., 2018, 13, 1752
DOI: 10.1021/acschembio.7b01022

Time-Gated FRET and DNA-Based Photonic Molecular Logic Gates: AND, OR, NAND, and NOR

Melissa Massey, Igor L. Medintz, Mario G. Ancona and W. Russ Algar

ACS Sens., 2017, 2, 1205
DOI: 10.1021/acssensors.7b00355

Antibody-controlled actuation of DNA-based molecular circuits

Wouter Engelen, Lenny H. H. Meijer, Bram Somers, Tom F. A. de Greef and Maarten Merkx

Nat Commun, 2017, 8
DOI: 10.1038/ncomms14473

High-sensitivity assay for Hg (II) and Ag (I) ion detection: A new class of droplet digital PCR logic gates for an intelligent DNA calculator

Nan Cheng, Pengyu Zhu, Yuancong Xu, Kunlun Huang, Yunbo Luo, Zhansen Yang and Wentao Xu

Biosensors and Bioelectronics, 2016, 84, 1
DOI: 10.1016/j.bios.2016.04.084

Contrary Logic Pair Library, Parity Generator/Checker and Various Concatenated Logic Circuits Engineered by a Label‐Free and Immobilization‐Free Electrochemiluminescence Resonance Energy Transfer System

Liping Zhu, Linying Yu, Tian Meng, Yao Peng and Xiurong Yang

Small, 2021, 17
DOI: 10.1002/smll.202102881

Thermoreversible Control of Nucleic Acid Structure and Function with Glyoxal Caging

Steve D. Knutson, Aimee A. Sanford, Colin S. Swenson, Megan M. Korn, Brea A. Manuel and Jennifer M. Heemstra

J. Am. Chem. Soc., 2020, 142, 17766
DOI: 10.1021/jacs.0c08996

The logic devices for biomolecular computing: Progress, strategies, and future directions

Debopriya Bose, Gun Anit Kaur, Sapna Balayan, Subhrangsu Chatterjee and Ashutosh Tiwari

Nano Today, 2024, 57, 102320
DOI: 10.1016/j.nantod.2024.102320

Programmable Live‐Cell CRISPR Imaging with Toehold‐Switch‐Mediated Strand Displacement

Yaya Hao, Jiang Li, Qian Li, Luhao Zhang, Jiye Shi, Xueli Zhang, Ali Aldalbahi, Lihua Wang, Chunhai Fan and Fei Wang

Angew Chem Int Ed, 2020, 59, 20612
DOI: 10.1002/anie.202009062

A simulated colorimetric INHIBIT logic gate based on 2-(2-thiazolylazo)-p-cresol

Hai-Bo Liu, Hong-Yi Zhao and Jing Wang

Spectroscopy Letters, 2016, 49, 558
DOI: 10.1080/00387010.2016.1221834

Simultaneous Monitoring of Cell-surface Receptor and Tumor-targeted Photodynamic Therapy via TdT-initiated Poly-G-Quadruplexes

Tianhui Shi, Menglin Wang, Hao Li, Miao Wang, Xingyu Luo, Yan Huang, Hong-Hui Wang, Zhou Nie and Shouzhuo Yao

Sci Rep, 2018, 8
DOI: 10.1038/s41598-018-23902-5

Feedforward Chemical Neural Network: An In Silico Chemical System That Learns xor

Drew Blount, Peter Banda, Christof Teuscher and Darko Stefanovic

Artificial Life, 2017, 23, 295
DOI: 10.1162/ARTL_a_00233

A high-throughput and ultrasensitive identification methodology for unauthorized GMP component based on suspension array and logical calculator

Pengyu Zhu, Wei Fu, Shuang Wei, Xiao Liu, Chenguang Wang, Yun Lu, Ying Shang, Xiyang Wu, Yuping Wu and Shuifang Zhu

Sci Rep, 2019, 9
DOI: 10.1038/s41598-019-43863-7

Input Selection Drives Molecular Logic Gate Design

Francielly T. Souto and Gleiston G. Dias

Analytica, 2023, 4, 456
DOI: 10.3390/analytica4040033

Repressor logic modules assembled by rolling circle amplification platform to construct a set of logic gates

Hua Wei, Bo Hu, Suming Tang, Guojie Zhao and Yifu Guan

Sci Rep, 2016, 6
DOI: 10.1038/srep37477

Detection of long mRNA sequences by a Y-shaped DNA probe with three target-binding segments

Sidie He, Xiaojia Zhao, Feng Chen, Chunyan Chen, Hang Gong and Changqun Cai

Analytica Chimica Acta, 2023, 1277, 341633
DOI: 10.1016/j.aca.2023.341633

Dynamics of semilattice networks with strongly connected dependency graph

Alan Veliz-Cuba and Reinhard Laubenbacher

Automatica, 2019, 99, 167
DOI: 10.1016/j.automatica.2018.10.031

Versatile and Homogeneous DNA Tetraplex Platform for Constructing Label‐Free Logic Devices: From Design to Application

Dan Huang, Chunrong Yang, Ye Yao, Jicheng Li, Chen Guo, Jianchi Chen, Yi Zhang, Shu Yang, Qianfan Yang and Yalin Tang

Chemistry A European J, 2019, 25, 6996
DOI: 10.1002/chem.201900734

Exosome engineering for efficient and targeted drug delivery: Current status and future perspective

Farzaneh Malekian, Alireza Shamsian, Sai Priyanka Kodam and Mujib Ullah

The Journal of Physiology, 2023, 601, 4853
DOI: 10.1113/JP282799

Molecular Recognition-Based DNA Nanoassemblies on the Surfaces of Nanosized Exosomes

Shuo Wan, Liqin Zhang, Sai Wang, Yuan Liu, Cuichen Wu, Cheng Cui, Hao Sun, Muling Shi, Ying Jiang, Long Li, Liping Qiu and Weihong Tan

J. Am. Chem. Soc., 2017, 139, 5289
DOI: 10.1021/jacs.7b00319