Exploring the dynamics of DNA nucleotides in graphene/h-BN nanopores: insights from ab initio molecular dynamics

Ali Kiakojouri, Irmgard Frank and Ebrahim Nadimi

Phys. Chem. Chem. Phys., 2023, 25, 13452
DOI: 10.1039/D3CP00416C

Carbon nanopores for DNA sequencing: a review on nanopore materials

Jing Xu, Xin Jiang and Nianjun Yang

Chem. Commun., 2023, 59, 4838
DOI: 10.1039/D2CC06517G

Effect of graphene electrode functionalization on machine learning-aided single nucleotide classification

Mohd Rashid, Milan Kumar Jena, Sneha Mittal and Biswarup Pathak

Nanoscale, 2024, 16, 20202
DOI: 10.1039/D4NR02274B

Topological line defects in hexagonal SiC monolayer

Wallace P. Morais, Guilherme J. Inacio, Rodrigo G. Amorim, Wendel S. Paz, Fernando N. N. Pansini and Fábio A. L. de Souza

Phys. Chem. Chem. Phys., 2023, 25, 33048
DOI: 10.1039/D3CP04267G

Identification of DNA nucleotides by conductance and tunnelling current variation through borophene nanogaps

Milan Kumar Jena and Biswarup Pathak

Phys. Chem. Chem. Phys., 2022, 24, 21427
DOI: 10.1039/D2CP02093A

Detection and distinction of amino acids and post-translational modifications with gold nanojunctions

Rodrigo G. Amorim, Filipe C. D. A. Lima, Fábio Arthur Leão de Souza, Wanderlã L. Scopel, Jariyanee Prasongkit and Ralph H. Scheicher

Nanoscale, 2025, 17, 2498
DOI: 10.1039/D4NR03359K

Gas-sensing detection in the carbon phosphide monolayer: improving COx sensitivity through B doping

Pedro Elias Priori Spalenza, Fábio Arthur Leão de Souza, Rodrigo G. Amorim and Wanderlã Luis Scopel

Phys. Chem. Chem. Phys., 2022, 24, 22067
DOI: 10.1039/D2CP02603A

Discriminating sensing of explosive molecules using graphene–boron nitride–graphene heteronanosheets

Laith A. Algharagholy, Qusiy H. Al-Galiby, Amaal A. Al-Backri, Hatef Sadeghi and Ahmed A. Wabdan

RSC Adv., 2022, 12, 35151
DOI: 10.1039/D2RA06125B

Computational insight into the bioapplication of 2D materials: A review

Yinyin Qian and Huaming Yang

Nano Today, 2023, 53, 102007
DOI: 10.1016/j.nantod.2023.102007

Research progress and application of solid-state nanopore fabrication based on wet etching

Liang Cheng, Yun Chen, Bin Xie, Hengxu Wu, Chuhao Cai, Wenxuan Wu, Yuanhui Guo, Maoxiang Hou, Li Ma, Huilong Liu and Xin Chen

Fundamental Research, 2025
DOI: 10.1016/j.fmre.2025.03.009

Structural Properties of Hachimoji Nucleic Acids and Their Building Blocks: Comparison of Genetic Systems with Four, Six and Eight Alphabets

Indu Negi, Bimaldeep Singh, Amanpreet Singh Mahmi and Purshotam Sharma

ChemPhysChem, 2023, 24
DOI: 10.1002/cphc.202200714

Progress in adsorption capacity of nanomaterials for carbon dioxide capture: A comparative study

Rabita Mohd Firdaus, Alexandre Desforges, Abdul Rahman Mohamed and Brigitte Vigolo

Journal of Cleaner Production, 2021, 328, 129553
DOI: 10.1016/j.jclepro.2021.129553

Graphene Nanoslit Device for Protein Sequencing: Ab Initio Quantum Transport Study

Sneha Mittal, Rameshwar L. Kumawat, Milan Kumar Jena and Biswarup Pathak

ACS Appl. Nano Mater., 2022, 5, 2715
DOI: 10.1021/acsanm.1c04369

Assessing Readability of an 8-Letter Expanded Deoxyribonucleic Acid Alphabet with Nanopores

Christopher A. Thomas, Jonathan M. Craig, Shuichi Hoshika, Henry Brinkerhoff, Jesse R. Huang, Sarah J. Abell, Hwanhee C. Kim, Michaela C. Franzi, Jessica D. Carrasco, Hyo-Joong Kim, Drew C. Smith, Jens H. Gundlach, Steven A. Benner and Andrew H. Laszlo

J. Am. Chem. Soc., 2023, 145, 8560
DOI: 10.1021/jacs.3c00829

Machine Learning Boosted Quantum-Profiling of Blood Antigens

Dyuti Chatterjee, Sneha Mittal, Milan Kumar Jena and Biswarup Pathak

J. Phys. Chem. Lett., 2025, 16, 7824
DOI: 10.1021/acs.jpclett.5c01461

First-Principles Density Functional Theory Study on Graphene and Borophene Nanopores for Individual Identification of DNA Nucleotides

Milan Kumar Jena, Rameshwar L. Kumawat and Biswarup Pathak

ACS Appl. Nano Mater., 2021, 4, 13573
DOI: 10.1021/acsanm.1c03015

Amplifying Quantum Tunneling Current Sensitivity through Labeling Nucleotides Using Graphene Nanogap Electrodes

Sneha Mittal, Milan Kumar Jena and Biswarup Pathak

ACS Appl. Nano Mater., 2022, 5, 9356
DOI: 10.1021/acsanm.2c01667

Two-Dimensional Material-Based Nanofluidic Devices and Their Applications

Yangjun Cui, Long Gao, Cuifeng Ying, Jianguo Tian and Zhibo Liu

ACS Nano, 2025, 19, 1911
DOI: 10.1021/acsnano.4c12051

Detecting Hachimoji DNA: An Eight-Building-Block Genetic System with MoS2 and Janus MoSSe Monolayers

Vasudeo Babar, Sitansh Sharma, Abdul Rajjak Shaikh, Romina Oliva, Mohit Chawla and Luigi Cavallo

ACS Appl. Mater. Interfaces, 2024, 16, 21427
DOI: 10.1021/acsami.3c18400

Machine Learning Aided Interpretable Approach for Single Nucleotide-Based DNA Sequencing using a Model Nanopore

Milan Kumar Jena, Diptendu Roy and Biswarup Pathak

J. Phys. Chem. Lett., 2022, 13, 11818
DOI: 10.1021/acs.jpclett.2c02824

Spin state engineering of triangulene graphene embedded in h-BN nanoflake

L. Fiorini Filho, C.J. Terroso, F.A.L. de Souza, W.S. Paz and F.N.N. Pansini

Carbon, 2023, 213, 118186
DOI: 10.1016/j.carbon.2023.118186

Protein Sequencing with Artificial Intelligence: Machine Learning Integrated Phosphorene Nanoslit

Sneha Mittal, Milan Kumar Jena and Biswarup Pathak

Chemistry A European J, 2023, 29
DOI: 10.1002/chem.202301667

Quantum Transport Informed Machine Learning Mapping of Current–Voltage Characteristics for Precision Deoxyribonucleic Acid Sequencing

Mohd Rashid, Milan Kumar Jena, Sneha Mittal and Biswarup Pathak

J. Phys. Chem. A, 2025, 129, 9084
DOI: 10.1021/acs.jpca.5c03838

Advancement of Next‐Generation DNA Sequencing through Ionic Blockade and Transverse Tunneling Current Methods

Rameshwar L. Kumawat, Milan Kumar Jena, Sneha Mittal and Biswarup Pathak

Small, 2024
DOI: 10.1002/smll.202401112

Machine Learning Prediction and Classification of Transmission Functions for Rapid DNA Sequencing in a Hybrid Nanopore

Souptik Pandit, Milan Kumar Jena, Sneha Mittal and Biswarup Pathak

ACS Appl. Nano Mater., 2024, 7, 17120
DOI: 10.1021/acsanm.4c03685

Nanopore‐Based Label‐Free and Single‐Molecule Sequencing toward Precision Diagnosis

Yufan Cui, Yueming Zhai, Yongxi Zhao and Xingyi Ma

Advanced Materials, 2026, 38
DOI: 10.1002/adma.202513613

Comparative investigation of uridine and Hachimoji RNA base interaction with single-walled carbon nanotube

Mashari Alangari

J Mol Model, 2026, 32
DOI: 10.1007/s00894-026-06726-3

Turn of the decade: versatility of 2D hexagonal boron nitride

Albert F Rigosi, Antonio L Levy, Michael R Snure and Nicholas R Glavin

J. Phys. Mater., 2021, 4, 032003
DOI: 10.1088/2515-7639/abf1ab

Artificially Intelligent Nanogap for Rapid DNA Sequencing: A Machine Learning Aided Quantum Tunneling Approach

Milan Kumar Jena, Diptendu Roy, Sneha Mittal and Biswarup Pathak

ACS Materials Lett., 2023, 5, 2488
DOI: 10.1021/acsmaterialslett.3c00475

Solid-State nanopore DNA Sequencing: Advances, challenges and prospects

Shixuan He, Yexiang Liu, Shaoxi Fang, Yadong Li, Ting Weng, Rong Tian, Yajie Yin, Daming Zhou, Bohua Yin, Yunjiao Wang, Liyuan Liang, Wanyi Xie and Deqiang Wang

Coordination Chemistry Reviews, 2024, 510, 215816
DOI: 10.1016/j.ccr.2024.215816

A Step toward Amino Acid-Labeled DNA Sequencing: Boosting Transmission Sensitivity of Graphene Nanogap

Sneha Mittal and Biswarup Pathak

ACS Appl. Bio Mater., 2023, 6, 218
DOI: 10.1021/acsabm.2c00851

First‐Principles Study of the Electronic Properties of Hachimoji‐DNA Bases

Mashari Alangari and Hashem Mohammad

Int J of Quantum Chemistry, 2025, 125
DOI: 10.1002/qua.70058

Two Detection Modes of Nanoslit Sensing Based on Planar Heterostructure of Graphene/Hexagonal Boron Nitride

Changxiong Huang, Zhen Li, Xiaohong Zhu, Xinyao Ma, Na Li and Jun Fan

ACS Nano, 2023, 17, 3301
DOI: 10.1021/acsnano.2c05002

Computational simulation of graphene/h-BN nanopores for single-molecule herbicide sensing

Wanderlã L Scopel, Fábio A L de Souza, Sávio B de Souza, Rodrigo G Amorim and Ralph H Scheicher

Nanotechnology, 2025, 36, 135501
DOI: 10.1088/1361-6528/adac67

Platinum doped two-dimensional Janus WSSe monolayer-based biosensors for discrimination of natural DNA bases

Noora H. Ali and Lafy F. Al-Badry

Physica E: Low-dimensional Systems and Nanostructures, 2026, 178, 116472
DOI: 10.1016/j.physe.2026.116472

Diffusion of DNA on Atomically Flat 2D Material Surfaces

Dong Hoon Shin, Sung Hyun Kim, Kush Coshic, Kenji Watanabe, Takashi Taniguchi, Gerard J. Verbiest, Sabina Caneva, Aleksei Aksimentiev, Peter G. Steeneken and Chirlmin Joo

ACS Nano, 2025, 19, 21307
DOI: 10.1021/acsnano.4c16277

Structural evolution of in-plane hybrid graphene/hexagonal boron nitride heterostructure upon heating

Hang T.T. Nguyen

Journal of Molecular Graphics and Modelling, 2023, 125, 108579
DOI: 10.1016/j.jmgm.2023.108579

Sensing Hachimoji DNA Bases with Janus MoSH Monolayer Nanodevice: Insights from Density Functional Theory (DFT) and Non-Equilibrium Green’s Function Analysis

Vasudeo Babar, Sitansh Sharma, Abdul Rajjak Shaikh, Romina Oliva, Mohit Chawla and Luigi Cavallo

ACS Omega, 2024, 9, 48173
DOI: 10.1021/acsomega.4c05356