Lanthanide doped luminescence nanothermometers in the biological windows: strategies and applications

Albenc Nexha, Joan Josep Carvajal, Maria Cinta Pujol, Francesc Díaz and Magdalena Aguiló

Nanoscale, 2021, 13, 7913
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Interplay among the “flipping” glutamine, a conserved phenylalanine, water and hydrogen bonds within a blue-light sensing LOV domain

Eugenia Polverini, Florian Karl Schackert and Aba Losi

Photochem Photobiol Sci, 2020, 19, 892
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Steric and Electronic Interactions at Gln154 in ZEITLUPE Induce Reorganization of the LOV Domain Dimer Interface

Ashutosh Pudasaini, Robert Green, Young Hun Song, Abby Blumenfeld, Nischal Karki, Takato Imaizumi and Brian D. Zoltowski

Biochemistry, 2021, 60, 95
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Phylogenetic Analysis with Prediction of Cofactor or Ligand Binding for Pseudomonas aeruginosa PAS and Cache Domains

Andrew Hutchin, Charlotte Cordery, Martin A. Walsh, Jeremy S. Webb, Ivo Tews, Gaurav Sharma and Michael Galperin

Microbiol Spectr, 2021, 9
DOI: 10.1128/spectrum.01026-21

Two distinct mechanisms of flavoprotein spectral tuning revealed by low‐temperature and time‐dependent spectroscopy

Andrey Nikolaev, Elena V. Tropina, Kirill N. Boldyrev, Eugene G. Maksimov, Valentin Borshchevskiy, Alexey Mishin, Anna Yudenko, Alexander Kuzmin, Elizaveta Kuznetsova, Oleg Semenov, Alina Remeeva and Ivan Gushchin

Protein Science, 2024, 33
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Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor

Jiawei Xing, Vadim M. Gumerov and Igor B. Zhulin

Sci. Adv., 2023, 9
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Rational Design of a Split Flavin-Based Fluorescent Reporter

Anna Yudenko, Anastasia Smolentseva, Ivan Maslov, Oleg Semenov, Ivan M. Goncharov, Vera V. Nazarenko, Nina L. Maliar, Valentin Borshchevskiy, Valentin Gordeliy, Alina Remeeva and Ivan Gushchin

ACS Synth. Biol., 2021, 10, 72
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Fine spectral tuning of a flavin-binding fluorescent protein for multicolor imaging

Andrey Nikolaev, Anna Yudenko, Anastasia Smolentseva, Andrey Bogorodskiy, Fedor Tsybrov, Valentin Borshchevskiy, Siarhei Bukhalovich, Vera V. Nazarenko, Elizaveta Kuznetsova, Oleg Semenov, Alina Remeeva and Ivan Gushchin

Journal of Biological Chemistry, 2023, 299, 102977
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Reengineering of a flavin‐binding fluorescent protein using ProteinMPNN

Andrey Nikolaev, Alexander Kuzmin, Elena Markeeva, Elizaveta Kuznetsova, Yury L. Ryzhykau, Oleg Semenov, Arina Anuchina, Alina Remeeva and Ivan Gushchin

Protein Science, 2024, 33
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Capturing the blue-light activated state of the Phot-LOV1 domain from Chlamydomonas reinhardtii using time-resolved serial synchrotron crystallography

Guillaume Gotthard, Sandra Mous, Tobias Weinert, Raiza Nara Antonelli Maia, Daniel James, Florian Dworkowski, Dardan Gashi, Antonia Furrer, Dmitry Ozerov, Ezequiel Panepucci, Meitian Wang, Gebhard F. X. Schertler, Joachim Heberle, Joerg Standfuss and Przemyslaw Nogly

IUCrJ, 2024, 11, 792
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Efficient flavinylation of glycosomal fumarate reductase by its own ApbE domain in Trypanosoma brucei

Robin Schenk, Sabine Bachmaier, Frédéric Bringaud and Michael Boshart

The FEBS Journal, 2021, 288, 5430
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A fluorescent reporter system for anaerobic thermophiles

Rémi Hocq, Sara Bottone, Arnaud Gautier and Stefan Pflügl

Front. Bioeng. Biotechnol., 2023, 11
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The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins

Katrin Röllen, Joachim Granzin, Alina Remeeva, Mehdi D. Davari, Thomas Gensch, Vera V. Nazarenko, Kirill Kovalev, Andrey Bogorodskiy, Valentin Borshchevskiy, Stefanie Hemmer, Ulrich Schwaneberg, Valentin Gordeliy, Karl-Erich Jaeger, Renu Batra-Safferling, Ivan Gushchin and Ulrich Krauss

Journal of Biological Chemistry, 2021, 296, 100662
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Extreme dependence of Chloroflexus aggregans LOV domain thermo- and photostability on the bound flavin species

Anastasia Smolentseva, Ivan M. Goncharov, Anna Yudenko, Andrey Bogorodskiy, Oleg Semenov, Vera V. Nazarenko, Valentin Borshchevskiy, Alexander V. Fonin, Alina Remeeva, Karl-Erich Jaeger, Ulrich Krauss, Valentin Gordeliy and Ivan Gushchin

Photochem Photobiol Sci, 2021, 20, 1645
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Characterization of flavin binding in oxygen‐independent fluorescent reporters

Nolan T. Anderson, Kevin B. Weyant and Arnab Mukherjee

AIChE Journal, 2020, 66
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Computational Investigation of Structural and Spectroscopic Properties of LOV-Based Proteins with Improved Fluorescence

Felipe Cardoso Ramos, Lorenzo Cupellini and Benedetta Mennucci

J. Phys. Chem. B, 2021, 125, 1768
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Backbone Cyclization of Flavin Mononucleotide-Based Fluorescent Protein Increases Fluorescence and Stability

Tingting Lin, Yuanyuan Ge, Qing Gao, Di Zhang, Xiaofeng Chen, Yafang Hu and Jun Fan

J. Microbiol. Biotechnol., 2023, 33, 1681
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Transcription factor-based biosensors and inducible systems in non-model bacteria: current progress and future directions

Nancy M Kim, Riley W Sinnott and Nicholas R Sandoval

Current Opinion in Biotechnology, 2020, 64, 39
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Beyond the Green Fluorescent Protein: Biomolecular Reporters for Anaerobic and Deep-Tissue Imaging

Harun F. Ozbakir, Nolan T. Anderson, Kang-Ching Fan and Arnab Mukherjee

Bioconjugate Chem., 2020, 31, 293
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Insights into the mechanisms of light‐oxygen‐voltage domain color tuning from a set of high‐resolution X‐ray structures

Alina Remeeva, Vera V. Nazarenko, Kirill Kovalev, Ivan M. Goncharov, Anna Yudenko, Roman Astashkin, Valentin Gordeliy and Ivan Gushchin

Proteins, 2021, 89, 1005
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luxA Gene From Enhygromyxa salina Encodes a Functional Homodimeric Luciferase

Anna Yudenko, Sergey V. Bazhenov, Vladimir A. Aleksenko, Ivan M. Goncharov, Oleg Semenov, Alina Remeeva, Vera V. Nazarenko, Elizaveta Kuznetsova, Vadim V. Fomin, Maria N. Konopleva, Rahaf Al Ebrahim, Nikolai N. Sluchanko, Yury Ryzhykau, Yury S. Semenov, Alexander Kuklin, Ilya V. Manukhov and Ivan Gushchin

Proteins, 2024, 92, 1449
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Expression and Purification of an Archaeal Cysteine-less LOV Domain

I. I. Natarov, O. Y. Semenov, A. A. Remeeva and I. Y. Gushchin

Biochem. Moscow Suppl. Ser. A, 2025, 19, 73
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Raman Scattering: From Structural Biology to Medical Applications

Alexey V. Vlasov, Nina L. Maliar, Sergey V. Bazhenov, Evelina I. Nikelshparg, Nadezda A. Brazhe, Anastasiia D. Vlasova, Stepan D. Osipov, Vsevolod V. Sudarev, Yury L. Ryzhykau, Andrey O. Bogorodskiy, Egor V. Zinovev, Andrey V. Rogachev, Ilya V. Manukhov, Valentin I. Borshchevskiy, Alexander I. Kuklin, Jan Pokorný, Olga Sosnovtseva, Georgy V. Maksimov and Valentin I. Gordeliy

Crystals, 2020, 10, 38
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High-resolution structure of a naturally red-shifted LOV domain

Ivan M. Goncharov, Anastasia Smolentseva, Oleg Semenov, Ilia Natarov, Vera V. Nazarenko, Anna Yudenko, Alina Remeeva and Ivan Gushchin

Biochemical and Biophysical Research Communications, 2021, 567, 143
DOI: 10.1016/j.bbrc.2021.06.046