Issue 27, 2019

Expanding the range of binding energies and oxidizability of biologically relevant S–aromatic interactions: imidazolium and phenolate binding to sulfoxide and sulfone

Abstract

Oxidation and protonation/deprotonation strongly impact intermolecular noncovalent interactions. For example, S–aromatic interactions are stabilized up to three-fold in the gas phase on oxidation of the sulfur ligand or protonation/deprotonation of the aromatic. To probe if such stabilizing effects are additive and to model interactions of oxidized methionine (MetOn) with protonated histidine and deprotonated tyrosine residues in proteins, we examined Me2SOn (n = 1, 2) binding to imidazolium, phenolate and their 4-methylated forms. Ab initio MP2(full)/6-311++G(d,p) gas-phase calculations reveal that the Me2SOn–imidazolium complexes adopt edge-on geometry with σ-type (N/C–Har⋯O) H-bonding and interaction energies of −17.2 to −31.1 kcal mol−1. The less stable (−13.8 to −21.0 kcal mol−1) Me2SOn–phenolates possess en-face geometry stabilized by π-type (C–H⋯πar) H-bonding. Comparing these energies with those reported for the Me2S-neutral aromatics affirms the additive effects of ligand protonation/deprotonation and oxidation on gas-phase stability. However, this is not the case in water although the aqueous complexes retain their preferred gas-phase σ- and π-type H-bonded structures. Binding free energies (kcal mol−1) calculated from molecular dynamics simulations in bulk water (preceded by CHARMM36 force field calibration where necessary) reveal that Me2SO–imidazolium (−4.4) is more stable than Me2SO–phenolate (−2.4) but Me2SO2–imidazolium (−0.6) is less stable than Me2SO2–phenolate (−3.8). Vertical ionization potentials (IPV) calculated for the gas-phase complexes indicate that the Me2SOn–phenolates, but not the Me2SOn–imidazoles, are oxidizable under biological conditions. Charge transfer from the phenolate increases its IPV by ∼20%, decreasing its susceptibility to oxidation. Overall, this work provides fundamental data to predict the behaviour of protein-based MetOn–aromatic-ion interactions.

Graphical abstract: Expanding the range of binding energies and oxidizability of biologically relevant S–aromatic interactions: imidazolium and phenolate binding to sulfoxide and sulfone

Supplementary files

Article information

Article type
Paper
Submitted
24 abr. 2019
Accepted
01 jun. 2019
First published
05 jun. 2019

Phys. Chem. Chem. Phys., 2019,21, 14620-14628

Expanding the range of binding energies and oxidizability of biologically relevant S–aromatic interactions: imidazolium and phenolate binding to sulfoxide and sulfone

E. A. Orabi and A. M. English, Phys. Chem. Chem. Phys., 2019, 21, 14620 DOI: 10.1039/C9CP02332A

To request permission to reproduce material from this article, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements