Issue 15, 2021

Enhancing the analysis of disorder in X-ray absorption spectra: application of deep neural networks to T-jump-X-ray probe experiments

Abstract

Many chemical and biological reactions, including ligand exchange processes, require thermal energy for the reactants to overcome a transition barrier and reach the product state. Temperature-jump (T-jump) spectroscopy uses a near-infrared (NIR) pulse to rapidly heat a sample, offering an approach for triggering these processes and directly accessing thermally-activated pathways. However, thermal activation inherently increases the disorder of the system under study and, as a consequence, can make quantitative interpretations of structural changes challenging. In this Article, we optimise a deep neural network (DNN) for the instantaneous prediction of Co K-edge X-ray absorption near-edge structure (XANES) spectra. We apply our DNN to analyse T-jump pump/X-ray probe data pertaining to the ligand exchange processes and solvation dynamics of Co2+ in chlorinated aqueous solution. Our analysis is greatly facilitated by machine learning, as our DNN is able to predict quickly and cost-effectively the XANES spectra of thousands of geometric configurations sampled from ab initio molecular dynamics (MD) using nothing more than the local geometric environment around the X-ray absorption site. We identify directly the structural changes following the T-jump, which are dominated by sample heating and a commensurate increase in the Debye–Waller factor.

Graphical abstract: Enhancing the analysis of disorder in X-ray absorption spectra: application of deep neural networks to T-jump-X-ray probe experiments

Article information

Article type
Paper
Submitted
02 dic. 2020
Accepted
30 mar. 2021
First published
30 mar. 2021
This article is Open Access
Creative Commons BY license

Phys. Chem. Chem. Phys., 2021,23, 9259-9269

Enhancing the analysis of disorder in X-ray absorption spectra: application of deep neural networks to T-jump-X-ray probe experiments

M. M. M. Madkhali, C. D. Rankine and T. J. Penfold, Phys. Chem. Chem. Phys., 2021, 23, 9259 DOI: 10.1039/D0CP06244H

This article is licensed under a Creative Commons Attribution 3.0 Unported Licence. You can use material from this article in other publications without requesting further permissions from the RSC, provided that the correct acknowledgement is given.

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