Jump to main content
Jump to site search

All chapters
Previous chapter Next chapter

Chapter 12

OpenMS: A Modular, Open-Source Workflow System for the Analysis of Quantitative Proteomics Data

OpenMS is a software framework for the analysis and visualisation of proteomics data. It consists of over 100 individual tools which can be combined to simple or more complex analysis workflows. The tools are based on a well-documented, open-source C++ library that can also be accessed via a Python interface. Besides these tools, OpenMS provides wrappers for many popular external software solutions such as search engines and protein inference algorithms. The workflows can be run on simple desktop computers as well as powerful computing clusters. In this chapter, we will discuss four workflows of increasing complexity and thereby introduce new users to the basic concepts of OpenMS.

Publication details

Print publication date
23 Nov 2016
Copyright year
Print ISBN
ePub eISBN