Fully protected pyrophosphates via phosphorobromidates for the synthesis of biopolymers

Abstract

Natural oligomers containing phosphodiester linkages, such as DNA and RNA oligomers, are readily accessible through the phosphoramidite P(III) approach. However, the repetitive introduction of pyrophosphates into an oligomeric backbone, as found in poly-ADP-ribose, remains challenging. The most effective method to date relies on P(III)–P(V) coupling, in which a phosphate monoester is linked with a phosphoramidite, facilitating chain elongation of the biopolymer following the oxidation of the P(III)–P(V) intermediate. This anionic and nucleophilic intermediate limits the chain length that can be achieved. To overcome this limitation, we designed a methodology based on P(V)–P(V) chemistry, where a phosphodiester is coupled to a protected and activated P(V) donor. To this end, the Atherton–Todd oxidation of H-phosphonates is utilised to generate an electrophilic halophosphate, which is then coupled with a phosphodiester to yield a fully protected pyrophosphate species. The chemistry was optimised to balance the reactivity and stability of the coupling partners and the product by introducing the o-chloro-p-nitrophenyl ethyl protecting group for the phosphodiester and pyrophosphates. The full protection of the pyrophosphate moiety during oligomer synthesis eliminates the issues associated with the nucleophilicity and charge of the deprotected pyrophosphate and enables the solid-phase synthesis of pyrophosphate-based ADP-ribose oligomers of unprecedented length.