An automated evaluation agent for Q&A pairs and reticular synthesis conditions

Abstract

We report an automated evaluation agent that can reliably assign classification labels to different Q&A pairs of both single-hop and multi-hop types, as well as to synthesis conditions datasets. Our agent is built around a suite of large language models (LLMs) and is designed to eliminate human involvement in the evaluation process. Even though we believe that this approach has broad applicability, for concreteness, we apply it here to reticular chemistry. Through extensive testing of various approaches such as DSPy and finetuning, among others, we found that the performance of a given LLM on these Q&A and synthesis conditions classification tasks is determined primarily by the architecture of the agent, where how the different inputs are parsed and processed and how the LLMs are called make a significant difference. We also found that the quality of the prompt provided remains paramount, irrespective of the sophistication of the underlying model. Even models considered state-of-the-art, such as GPT-o1, exhibit poor performance when the prompt lacks sufficient detail and structure. To overcome these challenges, we performed systematic prompt optimization, iteratively refining the prompt to significantly improve classification accuracy and achieve human-level evaluation benchmarks. We show that while LLMs have made remarkable progress, they still fall short of human reasoning without substantial prompt engineering. The agent presented here provides a robust and reproducible tool for evaluating Q&A pairs and synthesis conditions in a scalable manner and can serve as a foundation for future developments in automated evaluation of LLM inputs and outputs and more generally to create foundation models in chemistry.

Graphical abstract: An automated evaluation agent for Q&A pairs and reticular synthesis conditions

Supplementary files

Article information

Article type
Paper
Submitted
15 Sep 2025
Accepted
31 Oct 2025
First published
18 Nov 2025
This article is Open Access
Creative Commons BY-NC license

Digital Discovery, 2026, Advance Article

An automated evaluation agent for Q&A pairs and reticular synthesis conditions

N. Rampal, D. J. Fu, C. Zhao, H. S. Murayshid, A. A. Abaalkhail, N. E. Alhazmi, M. O. Alawad, C. Borgs, J. T. Chayes and O. M. Yaghi, Digital Discovery, 2026, Advance Article , DOI: 10.1039/D5DD00413F

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