Synthesis of siRNAs containing carbocyclic nucleotides and the role of cyclopentane conformation in RNAi activity

Abstract

5′-(E)- and 5′-(Z)-vinylphosphonate carbocyclic DNA and 5′-(E)-vinylphosphonate 2′- and 3′-O-methyl carbocyclic RNAs were incorporated at 5′ termini of antisense strands of small interfering RNAs. All but the 3′-O-methyl carbocyclic analogue resulted in gene silencing activity better than the siRNA lacking a 5′ phosphate in cells and in mice.

Graphical abstract: Synthesis of siRNAs containing carbocyclic nucleotides and the role of cyclopentane conformation in RNAi activity

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Article information

Article type
Communication
Submitted
31 Jan 2026
Accepted
23 Feb 2026
First published
20 Mar 2026
This article is Open Access
Creative Commons BY license

RSC Chem. Biol., 2026, Advance Article

Synthesis of siRNAs containing carbocyclic nucleotides and the role of cyclopentane conformation in RNAi activity

J. Kundu, D. Datta, M. Akabane-Nakata, S. Mandal, M. Krampert, M. Egli and M. Manoharan, RSC Chem. Biol., 2026, Advance Article , DOI: 10.1039/D6CB00038J

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