Issue 42, 2024

Effective patchiness from critical points of a coarse-grained protein model with explicit shape and charge anisotropy

Abstract

Colloidal model systems are successful in rationalizing emergent phenomena like aggregation, rheology and phase behaviour of protein solutions. Colloidal theory in conjunction with isotropic interaction models is often employed to estimate the stability of such solutions. In particular, a universal criterion for the reduced second virial coefficient at the critical point Image ID:d4sm00867g-t1.gif is frequently invoked which is based on the behavior of short-range attractive fluids (Noro–Frenkel rule, Image ID:d4sm00867g-t2.gif). However, if anisotropic models for the protein–protein interaction are considered, e.g. the Kern–Frenkel (KF) patchy particle model, the value of the Image ID:d4sm00867g-t3.gif criterion is shifted to lower values and explicitly depends on the number of patches. If an explicit shape anisotropy is considered, as e.g. in a coarse-grained protein model, the normalization of Image ID:d4sm00867g-t4.gif becomes ambiguous to some extent, as no unique exclusion volume can be defined anymore. Here, we investigate a low-resolution, coarse-grained model for the globular protein bovine serum albumin (BSA) and study effects of charge-anisotropy on the phase diagram (determined by simulations) at the isoelectric point. We present methods of assigning an “effective patchiness” to our protein model by comparing its critical properties to the KF model. We find that doubling the native charges increases the critical temperature Tc by ≈14% and that our BSA model can be compared to a 3 to 5 patch KF model. Finally, we argue that applying existing Image ID:d4sm00867g-t5.gif criteria from colloidal theory should be done with care, due to multiple, physically plausible ways of how to assign effective diameters to shape-anisotropic models.

Graphical abstract: Effective patchiness from critical points of a coarse-grained protein model with explicit shape and charge anisotropy

Article information

Article type
Paper
Submitted
15 Jul 2024
Accepted
07 Oct 2024
First published
08 Oct 2024
This article is Open Access
Creative Commons BY license

Soft Matter, 2024,20, 8455-8467

Effective patchiness from critical points of a coarse-grained protein model with explicit shape and charge anisotropy

J. Weimar, F. Hirschmann and M. Oettel, Soft Matter, 2024, 20, 8455 DOI: 10.1039/D4SM00867G

This article is licensed under a Creative Commons Attribution 3.0 Unported Licence. You can use material from this article in other publications without requesting further permissions from the RSC, provided that the correct acknowledgement is given.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements